Wall clock time and date at job start Tue Mar 31 2020 06:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35750 * 116.99903 * 2 1 4 4 C 1.39209 * 120.81404 * 0.02799 * 3 2 1 5 5 C 1.38308 * 119.28593 * 179.97438 * 4 3 2 6 6 N 1.31618 * 120.97342 * 0.02562 * 5 4 3 7 7 C 1.32794 * 121.77580 * 359.72094 * 6 5 4 8 8 C 1.48189 * 119.69666 * 180.27181 * 7 6 5 9 9 O 1.21506 * 120.00034 * 180.26519 * 8 7 6 10 10 N 1.34781 * 119.99994 * 0.26706 * 8 7 6 11 11 C 1.46492 * 120.00374 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 8 13 13 C 1.53937 * 113.74501 * 273.74268 * 12 11 10 14 14 N 1.47809 * 86.03766 * 222.08294 * 13 12 11 15 15 C 1.36936 * 134.45608 * 204.64297 * 14 13 12 16 16 H 1.08000 * 120.00000 * 173.35005 * 15 14 13 17 17 C 1.38815 * 120.00300 * 353.34987 * 15 14 13 18 18 N 1.31617 * 119.99699 * 5.06571 * 17 15 14 19 19 Si 1.86798 * 120.00219 * 185.06100 * 17 15 14 20 20 H 1.48501 * 109.47070 * 94.99019 * 19 17 15 21 21 H 1.48497 * 109.47147 * 214.98549 * 19 17 15 22 22 H 1.48496 * 109.47210 * 334.98749 * 19 17 15 23 23 C 1.47577 * 91.05228 * 24.55200 * 14 13 12 24 24 C 1.39095 * 120.60687 * 0.54126 * 7 6 5 25 25 H 1.08998 * 109.46795 * 59.99803 * 1 2 3 26 26 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46840 * 299.99724 * 1 2 3 28 28 H 1.07997 * 120.35744 * 359.94817 * 4 3 2 29 29 H 1.07998 * 119.51736 * 179.97438 * 5 4 3 30 30 H 0.97009 * 119.99449 * 0.02562 * 10 8 7 31 31 H 1.09003 * 109.47318 * 300.00271 * 11 10 8 32 32 H 1.09006 * 109.47065 * 59.99915 * 11 10 8 33 33 H 1.09004 * 112.94307 * 45.33791 * 12 11 10 34 34 H 1.09003 * 113.77145 * 336.34693 * 13 12 11 35 35 H 1.09001 * 113.77034 * 107.74543 * 13 12 11 36 36 H 0.97002 * 120.00373 * 180.02562 * 18 17 15 37 37 H 1.09004 * 113.76837 * 221.15865 * 23 14 13 38 38 H 1.08993 * 113.77347 * 89.75339 * 23 14 13 39 39 H 1.08009 * 120.51147 * 179.75065 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.3038 2.3877 0.0006 5 6 1.9643 3.6029 0.0011 6 7 3.2793 3.6590 0.0006 7 6 4.0261 2.5610 0.0050 8 6 5.5034 2.6780 0.0102 9 8 6.1921 1.6769 0.0094 10 7 6.0831 3.8947 0.0160 11 6 7.5434 4.0104 0.0217 12 6 7.9379 5.4887 0.0269 13 6 8.0142 6.1148 -1.3774 14 7 9.2466 6.7784 -0.9026 15 6 9.9210 7.9161 -1.2576 16 1 10.7651 8.2486 -0.6717 17 6 9.5198 8.6420 -2.3707 18 7 8.4327 8.2943 -3.0263 19 14 10.5226 10.1123 -2.9381 20 1 11.4706 9.6855 -3.9984 21 1 9.6121 11.1537 -3.4783 22 1 11.2821 10.6667 -1.7888 23 6 9.4571 5.7244 0.1087 24 6 3.4346 1.3021 -0.0009 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2244 2.3532 0.0002 29 1 1.3927 4.5192 0.0011 30 1 5.5332 4.6939 0.0170 31 1 7.9429 3.5243 0.9118 32 1 7.9495 3.5295 -0.8682 33 1 7.3631 6.0794 0.7402 34 1 8.1844 5.3895 -2.1731 35 1 7.1988 6.8043 -1.5958 36 1 8.1525 8.8013 -3.8043 37 1 9.7914 6.1029 1.0747 38 1 10.0520 4.8843 -0.2494 39 1 4.0435 0.4101 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031894443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:27 Heat of formation + Delta-G solvation = 21.969929 kcal Electronic energy + Delta-G solvation = -22028.596403 eV Core-core repulsion = 18552.852787 eV Total energy + Delta-G solvation = -3475.743616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.07392 -39.55216 -38.37518 -37.78174 -34.42899 -32.24023 -31.89533 -31.66555 -28.84083 -28.05170 -26.09565 -24.75879 -24.01032 -23.66481 -21.89108 -20.69961 -19.40719 -18.46082 -17.55757 -16.77193 -16.44963 -16.33303 -16.03821 -15.67854 -15.33911 -14.87220 -14.80169 -14.35433 -14.09887 -13.84708 -13.66352 -13.23275 -12.87183 -12.73686 -12.30639 -12.02840 -11.75413 -11.39163 -11.29167 -10.96208 -10.71141 -10.54454 -10.31821 -9.94330 -9.74284 -9.66158 -9.56476 -9.38675 -9.26668 -8.78395 -8.74715 -6.83112 -5.75055 -3.06164 0.40296 0.98326 2.57496 2.70862 3.29668 3.41411 3.46456 3.48437 3.70960 4.03450 4.24074 4.47263 4.48495 4.63180 4.64624 4.79629 4.97278 4.99146 5.20377 5.30996 5.36543 5.39117 5.47313 5.66670 5.69211 5.88802 6.03643 6.11071 6.28113 6.39770 6.59129 6.68666 6.75040 6.78792 7.26771 7.38841 7.45353 7.60003 7.77283 8.00903 8.29168 9.07552 9.73730 10.64110 11.42713 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.031461 B = 0.002705 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.771967 B =10347.817154 C =10960.278487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.161 3.839 4 C -0.246 4.246 5 C 0.138 3.862 6 N -0.479 5.479 7 C 0.121 3.879 8 C 0.566 3.434 9 O -0.537 6.537 10 N -0.697 5.697 11 C 0.128 3.872 12 C -0.154 4.154 13 C 0.172 3.828 14 N -0.614 5.614 15 C -0.223 4.223 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.128 3.872 24 C -0.146 4.146 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.143 0.857 29 H 0.167 0.833 30 H 0.414 0.586 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.029 0.971 35 H 0.069 0.931 36 H 0.253 0.747 37 H 0.045 0.955 38 H 0.036 0.964 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.713 -14.218 7.659 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.108 3.892 4 C -0.268 4.268 5 C -0.021 4.021 6 N -0.194 5.194 7 C -0.017 4.017 8 C 0.350 3.650 9 O -0.414 6.414 10 N -0.347 5.347 11 C 0.004 3.996 12 C -0.174 4.174 13 C 0.047 3.953 14 N -0.340 5.340 15 C -0.351 4.351 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.566 5.566 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.002 3.998 24 C -0.167 4.167 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.161 0.839 29 H 0.184 0.816 30 H 0.250 0.750 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.597 -14.042 7.461 23.717 hybrid contribution -0.527 0.452 -0.535 0.877 sum -18.125 -13.590 6.926 23.689 Atomic orbital electron populations 1.23173 0.77554 1.04570 1.01753 1.86100 1.22025 1.26009 1.87810 1.19203 0.92131 0.84829 0.93082 1.22409 1.01791 0.93221 1.09329 1.22621 0.89662 0.97250 0.92569 1.67656 1.07359 1.31187 1.13165 1.21061 0.94595 0.88577 0.97428 1.17767 0.85561 0.84132 0.77549 1.90782 1.63352 1.36656 1.50604 1.45914 1.08663 1.08084 1.72013 1.21554 0.78238 0.97812 1.02016 1.23827 0.98506 0.92691 1.02351 1.22291 0.90403 0.92750 0.89906 1.45972 1.27210 1.21455 1.39336 1.19028 1.10197 0.98033 1.07819 0.90224 1.24827 0.98244 0.99777 0.97635 1.69834 1.23745 1.41707 1.21315 0.86132 0.79300 0.81886 0.78673 1.21659 1.21732 1.20564 1.22494 0.92196 0.91474 0.93652 1.21401 0.91943 0.99838 1.03562 0.92175 0.87701 0.92208 0.83913 0.81607 0.75007 0.91610 0.91065 0.89083 0.95292 0.91316 0.93662 0.93674 0.94614 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.10 16 2 O -0.31 -2.77 10.51 -18.96 -0.20 -2.97 16 3 C 0.16 1.62 6.73 -38.85 -0.26 1.36 16 4 C -0.25 -1.98 9.11 -39.20 -0.36 -2.34 16 5 C 0.14 1.27 11.17 -17.62 -0.20 1.07 16 6 N -0.48 -5.93 9.54 -9.87 -0.09 -6.02 16 7 C 0.12 1.64 6.75 -83.05 -0.56 1.08 16 8 C 0.57 8.93 7.81 -12.17 -0.10 8.84 16 9 O -0.54 -9.78 16.32 5.36 0.09 -9.69 16 10 N -0.70 -10.62 5.54 -61.14 -0.34 -10.95 16 11 C 0.13 2.06 5.51 -4.05 -0.02 2.04 16 12 C -0.15 -2.82 3.93 -89.70 -0.35 -3.17 16 13 C 0.17 4.03 6.99 -2.85 -0.02 4.01 16 14 N -0.61 -15.95 3.70 -177.73 -0.66 -16.61 16 15 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 16 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 17 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 18 N -0.92 -27.57 11.51 55.49 0.64 -26.93 16 19 Si 0.91 22.37 29.56 -169.99 -5.02 17.34 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.13 2.62 8.51 -2.97 -0.03 2.60 16 24 C -0.15 -1.79 9.60 -38.89 -0.37 -2.16 16 25 H 0.06 0.21 7.71 -51.93 -0.40 -0.19 16 26 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.20 7.71 -51.93 -0.40 -0.20 16 28 H 0.14 0.68 6.45 -52.49 -0.34 0.34 16 29 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.41 5.95 7.80 -40.82 -0.32 5.64 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.23 7.87 -51.93 -0.41 0.82 16 33 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.03 0.71 7.92 -51.93 -0.41 0.30 16 35 H 0.07 1.77 7.37 -51.93 -0.38 1.38 16 36 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.16 1.92 7.64 -52.48 -0.40 1.52 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -34.43 335.48 -7.20 -41.63 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.14 Total: 1.56 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -1.53 Total: 7.58 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.45 Total: -60.52 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.11 Total: -12.66 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.43 -7.20 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031894443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.604 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds