Wall clock time and date at job start Tue Mar 31 2020 06:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35750 * 116.99903 * 2 1 4 4 C 1.39209 * 120.81404 * 0.02799 * 3 2 1 5 5 C 1.38308 * 119.28593 * 179.97438 * 4 3 2 6 6 N 1.31618 * 120.97342 * 0.02562 * 5 4 3 7 7 C 1.32794 * 121.77580 * 359.72094 * 6 5 4 8 8 C 1.48189 * 119.69666 * 180.27181 * 7 6 5 9 9 O 1.21506 * 120.00034 * 180.26519 * 8 7 6 10 10 N 1.34781 * 119.99994 * 0.26706 * 8 7 6 11 11 C 1.46492 * 120.00374 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 8 13 13 C 1.53937 * 113.74501 * 273.74268 * 12 11 10 14 14 N 1.47809 * 86.03766 * 222.08294 * 13 12 11 15 15 C 1.36936 * 134.45608 * 204.64297 * 14 13 12 16 16 H 1.08000 * 120.00000 * 173.35005 * 15 14 13 17 17 C 1.38815 * 120.00300 * 353.34987 * 15 14 13 18 18 N 1.31617 * 119.99699 * 5.06571 * 17 15 14 19 19 Si 1.86798 * 120.00219 * 185.06100 * 17 15 14 20 20 H 1.48501 * 109.47070 * 94.99019 * 19 17 15 21 21 H 1.48497 * 109.47147 * 214.98549 * 19 17 15 22 22 H 1.48496 * 109.47210 * 334.98749 * 19 17 15 23 23 C 1.47577 * 91.05228 * 24.55200 * 14 13 12 24 24 C 1.39095 * 120.60687 * 0.54126 * 7 6 5 25 25 H 1.08998 * 109.46795 * 59.99803 * 1 2 3 26 26 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46840 * 299.99724 * 1 2 3 28 28 H 1.07997 * 120.35744 * 359.94817 * 4 3 2 29 29 H 1.07998 * 119.51736 * 179.97438 * 5 4 3 30 30 H 0.97009 * 119.99449 * 0.02562 * 10 8 7 31 31 H 1.09003 * 109.47318 * 300.00271 * 11 10 8 32 32 H 1.09006 * 109.47065 * 59.99915 * 11 10 8 33 33 H 1.09004 * 112.94307 * 45.33791 * 12 11 10 34 34 H 1.09003 * 113.77145 * 336.34693 * 13 12 11 35 35 H 1.09001 * 113.77034 * 107.74543 * 13 12 11 36 36 H 0.97002 * 120.00373 * 180.02562 * 18 17 15 37 37 H 1.09004 * 113.76837 * 221.15865 * 23 14 13 38 38 H 1.08993 * 113.77347 * 89.75339 * 23 14 13 39 39 H 1.08009 * 120.51147 * 179.75065 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.3038 2.3877 0.0006 5 6 1.9643 3.6029 0.0011 6 7 3.2793 3.6590 0.0006 7 6 4.0261 2.5610 0.0050 8 6 5.5034 2.6780 0.0102 9 8 6.1921 1.6769 0.0094 10 7 6.0831 3.8947 0.0160 11 6 7.5434 4.0104 0.0217 12 6 7.9379 5.4887 0.0269 13 6 8.0142 6.1148 -1.3774 14 7 9.2466 6.7784 -0.9026 15 6 9.9210 7.9161 -1.2576 16 1 10.7651 8.2486 -0.6717 17 6 9.5198 8.6420 -2.3707 18 7 8.4327 8.2943 -3.0263 19 14 10.5226 10.1123 -2.9381 20 1 11.4706 9.6855 -3.9984 21 1 9.6121 11.1537 -3.4783 22 1 11.2821 10.6667 -1.7888 23 6 9.4571 5.7244 0.1087 24 6 3.4346 1.3021 -0.0009 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2244 2.3532 0.0002 29 1 1.3927 4.5192 0.0011 30 1 5.5332 4.6939 0.0170 31 1 7.9429 3.5243 0.9118 32 1 7.9495 3.5295 -0.8682 33 1 7.3631 6.0794 0.7402 34 1 8.1844 5.3895 -2.1731 35 1 7.1988 6.8043 -1.5958 36 1 8.1525 8.8013 -3.8043 37 1 9.7914 6.1029 1.0747 38 1 10.0520 4.8843 -0.2494 39 1 4.0435 0.4101 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031894443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:26 Heat of formation + Delta-G solvation = -3.363694 kcal Electronic energy + Delta-G solvation = -22029.694952 eV Core-core repulsion = 18552.852787 eV Total energy + Delta-G solvation = -3476.842165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.90668 -40.66499 -39.68082 -38.96315 -35.83764 -34.19438 -32.70123 -32.57927 -30.52588 -28.58471 -27.72478 -26.54251 -25.16551 -24.42776 -23.55529 -21.81113 -20.86155 -19.56659 -18.71662 -18.38903 -17.53027 -17.01111 -16.97056 -16.88668 -16.65493 -16.39467 -15.91751 -15.58936 -15.41146 -14.94625 -14.77908 -14.56173 -14.38458 -13.92182 -13.38733 -13.30839 -13.09469 -12.87911 -12.54303 -12.52559 -12.31542 -12.21936 -11.84528 -11.62219 -11.42065 -11.19940 -10.86176 -10.68507 -10.42004 -10.05181 -9.98339 -8.90145 -7.91105 -5.23622 -0.46698 0.21159 1.45700 1.48065 1.56868 1.65318 1.82783 2.31475 2.48310 2.79799 3.10440 3.29418 3.41421 3.58920 3.74387 3.81935 3.97493 4.05619 4.16913 4.34773 4.36647 4.39695 4.49886 4.60073 4.70238 4.76949 4.78092 4.86025 4.88124 4.93219 5.10278 5.26694 5.33636 5.38351 5.54977 5.64979 5.94199 6.14570 6.38530 6.79182 6.92530 7.09209 7.61255 8.57941 9.26674 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.031461 B = 0.002705 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.771967 B =10347.817154 C =10960.278487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.159 3.841 4 C -0.225 4.225 5 C 0.134 3.866 6 N -0.499 5.499 7 C 0.100 3.900 8 C 0.565 3.435 9 O -0.569 6.569 10 N -0.694 5.694 11 C 0.138 3.862 12 C -0.116 4.116 13 C 0.169 3.831 14 N -0.646 5.646 15 C -0.236 4.236 16 H 0.085 0.915 17 C -0.070 4.070 18 N -0.953 5.953 19 Si 0.978 3.022 20 H -0.290 1.290 21 H -0.293 1.293 22 H -0.265 1.265 23 C 0.128 3.872 24 C -0.160 4.160 25 H 0.074 0.926 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.184 0.816 29 H 0.201 0.799 30 H 0.418 0.582 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.012 0.988 35 H 0.039 0.961 36 H 0.248 0.752 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.449 -14.190 8.788 26.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.238 6.238 3 C 0.105 3.895 4 C -0.246 4.246 5 C -0.025 4.025 6 N -0.215 5.215 7 C -0.037 4.037 8 C 0.351 3.649 9 O -0.449 6.449 10 N -0.344 5.344 11 C 0.014 3.986 12 C -0.136 4.136 13 C 0.044 3.956 14 N -0.373 5.373 15 C -0.364 4.364 16 H 0.103 0.897 17 C -0.263 4.263 18 N -0.601 5.601 19 Si 0.807 3.193 20 H -0.217 1.217 21 H -0.220 1.220 22 H -0.190 1.190 23 C 0.003 3.997 24 C -0.183 4.183 25 H 0.092 0.908 26 H 0.140 0.860 27 H 0.094 0.906 28 H 0.201 0.799 29 H 0.218 0.782 30 H 0.255 0.745 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.030 0.970 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.339 -14.030 8.624 25.402 hybrid contribution -0.125 0.356 -0.857 0.936 sum -19.465 -13.674 7.767 25.024 Atomic orbital electron populations 1.23548 0.75061 1.06343 1.03203 1.86092 1.24585 1.25585 1.87511 1.19248 0.91480 0.86117 0.92687 1.22797 1.03618 0.91742 1.06401 1.23269 0.88703 0.99173 0.91325 1.67613 1.09018 1.30782 1.14062 1.20665 0.93329 0.89558 1.00124 1.18136 0.86773 0.83518 0.76518 1.90749 1.64462 1.37521 1.52139 1.45836 1.08209 1.08386 1.71984 1.21337 0.79055 0.95932 1.02240 1.23429 0.97561 0.93863 0.98750 1.22188 0.88996 0.92052 0.92379 1.46395 1.28114 1.22168 1.40613 1.19449 1.10086 0.99025 1.07826 0.89706 1.25692 0.99443 1.03014 0.98106 1.70022 1.25347 1.43104 1.21671 0.85057 0.77620 0.78389 0.78279 1.21699 1.22005 1.18957 1.22694 0.93644 0.90298 0.93091 1.21367 0.93404 0.98952 1.04549 0.90754 0.86036 0.90552 0.79908 0.78219 0.74482 0.89881 0.92353 0.87798 0.97001 0.94239 0.94273 0.91732 0.93376 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.19 16 2 O -0.33 -5.30 10.51 -90.76 -0.95 -6.26 16 3 C 0.16 2.96 6.73 22.74 0.15 3.11 16 4 C -0.23 -2.90 9.11 22.52 0.21 -2.70 16 5 C 0.13 2.11 11.17 84.74 0.95 3.06 16 6 N -0.50 -11.92 9.54 -185.14 -1.77 -13.68 16 7 C 0.10 2.73 6.75 41.85 0.28 3.01 16 8 C 0.57 18.23 7.81 86.89 0.68 18.90 16 9 O -0.57 -21.39 16.32 -3.74 -0.06 -21.45 16 10 N -0.69 -21.23 5.54 -465.65 -2.58 -23.81 16 11 C 0.14 4.41 5.51 86.38 0.48 4.89 16 12 C -0.12 -4.20 3.93 -10.14 -0.04 -4.24 16 13 C 0.17 8.15 6.99 86.44 0.60 8.75 16 14 N -0.65 -33.80 3.70 -716.21 -2.65 -36.45 16 15 C -0.24 -13.47 10.70 84.03 0.90 -12.57 16 16 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 17 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 18 N -0.95 -58.62 11.51 21.65 0.25 -58.37 16 19 Si 0.98 46.42 29.56 68.60 2.03 48.44 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 21 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 C 0.13 5.08 8.51 86.49 0.74 5.82 16 24 C -0.16 -3.98 9.60 22.72 0.22 -3.77 16 25 H 0.07 0.24 7.71 -2.39 -0.02 0.22 16 26 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.08 0.21 7.71 -2.39 -0.02 0.19 16 28 H 0.18 0.82 6.45 -2.91 -0.02 0.80 16 29 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.42 12.03 7.80 -92.70 -0.72 11.31 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.06 2.04 7.87 -2.38 -0.02 2.02 16 33 H 0.10 3.53 8.14 -2.38 -0.02 3.51 16 34 H 0.01 0.62 7.92 -2.39 -0.02 0.60 16 35 H 0.04 2.11 7.37 -2.39 -0.02 2.09 16 36 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 39 H 0.14 3.76 7.64 -2.91 -0.02 3.73 16 Total: -1.00 -76.72 335.48 1.35 -75.37 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.35 Total: 14.32 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 6.74 Total: 21.88 kcal Atomic # 7 Polarization: -125.56 SS G_CDS: -6.75 Total: -132.31 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -1.01 Total: -27.70 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -76.72 1.35 -75.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031894443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.004 kcal (2) G-P(sol) polarization free energy of solvation -76.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds