Wall clock time and date at job start Tue Mar 31 2020 06:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35668 * 117.00394 * 2 1 4 4 C 1.39283 * 119.62021 * 179.97438 * 3 2 1 5 5 C 1.38326 * 119.30899 * 180.02562 * 4 3 2 6 6 C 1.38788 * 118.55881 * 0.02562 * 5 4 3 7 7 C 1.39130 * 119.18516 * 359.97438 * 6 5 4 8 8 C 1.48151 * 119.68943 * 180.02562 * 7 6 5 9 9 O 1.21513 * 119.99856 * 0.02562 * 8 7 6 10 10 N 1.34783 * 120.00004 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99687 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46570 * 180.02562 * 11 10 8 13 13 C 1.53947 * 113.73965 * 273.73751 * 12 11 10 14 14 N 1.47817 * 86.03668 * 222.08636 * 13 12 11 15 15 C 1.36930 * 134.45727 * 204.64293 * 14 13 12 16 16 H 1.08006 * 119.99738 * 173.34987 * 15 14 13 17 17 C 1.38810 * 120.00268 * 353.34979 * 15 14 13 18 18 N 1.31626 * 119.99756 * 5.06272 * 17 15 14 19 19 Si 1.86800 * 120.00258 * 185.06009 * 17 15 14 20 20 H 1.48506 * 109.46623 * 94.99034 * 19 17 15 21 21 H 1.48500 * 109.47243 * 214.98768 * 19 17 15 22 22 H 1.48497 * 109.46975 * 334.99044 * 19 17 15 23 23 C 1.47584 * 91.04847 * 24.55072 * 14 13 12 24 24 N 1.31905 * 119.61493 * 359.73488 * 3 2 1 25 25 H 1.09006 * 109.47085 * 59.99883 * 1 2 3 26 26 H 1.08993 * 109.47737 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47081 * 299.99962 * 1 2 3 28 28 H 1.08004 * 120.34821 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.72408 * 180.02562 * 5 4 3 30 30 H 1.07993 * 120.40987 * 179.97438 * 6 5 4 31 31 H 0.96997 * 119.99787 * 0.02562 * 10 8 7 32 32 H 1.09001 * 109.46709 * 299.99712 * 11 10 8 33 33 H 1.08997 * 109.47455 * 60.00423 * 11 10 8 34 34 H 1.08996 * 112.94762 * 45.33205 * 12 11 10 35 35 H 1.08994 * 113.77105 * 336.34902 * 13 12 11 36 36 H 1.08993 * 113.76783 * 107.74908 * 13 12 11 37 37 H 0.96998 * 120.00066 * 179.97438 * 18 17 15 38 38 H 1.09004 * 113.76742 * 221.15077 * 23 14 13 39 39 H 1.08998 * 113.77058 * 89.75609 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4363 1.2723 0.0005 5 6 4.0577 2.5082 0.0011 6 6 3.2666 3.6486 0.0016 7 6 1.8819 3.5137 0.0010 8 6 1.0268 4.7235 0.0010 9 8 1.5355 5.8270 0.0010 10 7 -0.3154 4.6001 -0.0001 11 6 -1.1609 5.7965 -0.0007 12 6 -2.6332 5.3803 -0.0012 13 6 -3.2040 5.1231 -1.4076 14 7 -4.4064 5.8444 -0.9397 15 6 -5.7272 5.8422 -1.3008 16 1 -6.4470 6.3991 -0.7191 17 6 -6.1412 5.1241 -2.4143 18 7 -5.2839 4.3660 -3.0645 19 14 -7.9149 5.2337 -2.9899 20 1 -8.0275 6.2647 -4.0529 21 1 -8.3425 3.9179 -3.5293 22 1 -8.7847 5.6059 -1.8453 23 6 -3.6124 6.5659 0.0737 24 7 1.3192 2.3102 -0.0053 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0240 0.3662 0.0014 29 1 5.1350 2.5841 0.0011 30 1 3.7203 4.6286 0.0024 31 1 -0.7214 3.7192 -0.0005 32 1 -0.9517 6.3896 0.8896 33 1 -0.9504 6.3898 -0.8904 34 1 -2.8505 4.5859 0.7127 35 1 -2.6640 5.6383 -2.2019 36 1 -3.3791 4.0694 -1.6247 37 1 -5.5733 3.8639 -3.8423 38 1 -4.1130 6.6620 1.0373 39 1 -3.1925 7.5058 -0.2845 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032096602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:13 Heat of formation + Delta-G solvation = 22.167936 kcal Electronic energy + Delta-G solvation = -22447.339638 eV Core-core repulsion = 18971.604608 eV Total energy + Delta-G solvation = -3475.735030 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02419 -39.46312 -38.14649 -37.62780 -34.50832 -32.91293 -32.11835 -31.07914 -28.89191 -27.53600 -26.14752 -24.81156 -24.31195 -23.11521 -21.97464 -20.78425 -19.36990 -18.42414 -17.73792 -16.73559 -16.27598 -16.26786 -16.13650 -15.71293 -15.30559 -14.80254 -14.44294 -14.36090 -13.91348 -13.60099 -13.56317 -13.19451 -12.83130 -12.49070 -12.33514 -11.95074 -11.44124 -11.36683 -11.31806 -10.99866 -10.75591 -10.60236 -10.51274 -10.26070 -9.98341 -9.78047 -9.66514 -9.42649 -8.92826 -8.79612 -8.71749 -6.86938 -5.78765 -3.09897 0.44405 0.99533 2.70297 2.82486 3.15776 3.38783 3.44010 3.45857 3.68919 3.89625 4.45228 4.60265 4.73608 4.74167 5.00400 5.14298 5.15269 5.22305 5.22645 5.31480 5.34783 5.54901 5.62366 5.68145 5.82941 5.84823 6.03021 6.04771 6.23237 6.35376 6.53963 6.63965 6.73571 6.93347 7.21791 7.33806 7.34979 7.55369 7.69432 7.97067 8.23907 9.03899 9.70166 10.60195 11.39009 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020020 B = 0.003402 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.252531 B = 8227.302286 C = 9272.138086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.308 6.308 3 C 0.321 3.679 4 C -0.170 4.170 5 C -0.048 4.048 6 C -0.151 4.151 7 C 0.125 3.875 8 C 0.565 3.435 9 O -0.536 6.536 10 N -0.699 5.699 11 C 0.127 3.873 12 C -0.154 4.154 13 C 0.172 3.828 14 N -0.613 5.613 15 C -0.224 4.224 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.129 3.871 24 N -0.515 5.515 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.411 0.589 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.253 0.747 38 H 0.045 0.955 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.118 -7.459 7.728 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.214 6.214 3 C 0.140 3.860 4 C -0.191 4.191 5 C -0.074 4.074 6 C -0.172 4.172 7 C -0.012 4.012 8 C 0.349 3.651 9 O -0.413 6.413 10 N -0.348 5.348 11 C 0.004 3.996 12 C -0.174 4.174 13 C 0.046 3.954 14 N -0.339 5.339 15 C -0.352 4.352 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.566 5.566 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.002 3.998 24 N -0.242 5.242 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.164 0.836 29 H 0.167 0.833 30 H 0.169 0.831 31 H 0.247 0.753 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.311 -7.063 7.525 20.154 hybrid contribution -0.556 -0.234 -0.533 0.806 sum 16.755 -7.297 6.992 19.567 Atomic orbital electron populations 1.22964 0.76450 1.03415 1.03107 1.86236 1.23485 1.24006 1.87714 1.19784 0.89404 0.84504 0.92320 1.21287 0.92003 0.99887 1.05953 1.21444 1.00879 0.90822 0.94220 1.21999 0.93062 1.00871 1.01269 1.20888 0.92274 0.90266 0.97821 1.17855 0.82565 0.87226 0.77438 1.90781 1.74062 1.25833 1.50658 1.45935 1.05275 1.11475 1.72162 1.21555 0.89554 0.86500 1.02023 1.23829 0.90778 1.00490 1.02310 1.22289 0.84822 0.98371 0.89874 1.45962 1.02971 1.45565 1.39389 1.19035 0.81774 1.26475 1.07878 0.90207 1.24819 0.98038 0.99938 0.97592 1.69834 1.33544 1.31773 1.21486 0.86135 0.84098 0.77055 0.78718 1.21625 1.21712 1.20551 1.22493 0.90284 0.93390 0.93636 1.67181 1.41046 0.98242 1.17764 0.91628 0.88360 0.91968 0.83644 0.83345 0.83121 0.75292 0.91611 0.91049 0.89182 0.95290 0.91388 0.93661 0.93664 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.38 16 2 O -0.31 -3.38 10.48 -18.71 -0.20 -3.57 16 3 C 0.32 3.67 7.49 -17.13 -0.13 3.55 16 4 C -0.17 -1.50 10.05 -39.16 -0.39 -1.90 16 5 C -0.05 -0.39 10.16 -39.35 -0.40 -0.78 16 6 C -0.15 -1.60 9.63 -39.05 -0.38 -1.98 16 7 C 0.12 1.64 6.75 -83.02 -0.56 1.08 16 8 C 0.57 8.64 7.81 -12.19 -0.10 8.54 16 9 O -0.54 -9.43 16.32 5.35 0.09 -9.34 16 10 N -0.70 -10.39 5.55 -61.15 -0.34 -10.73 16 11 C 0.13 2.01 5.51 -4.04 -0.02 1.99 16 12 C -0.15 -2.77 3.93 -89.69 -0.35 -3.12 16 13 C 0.17 3.97 6.99 -2.84 -0.02 3.95 16 14 N -0.61 -15.71 3.70 -177.68 -0.66 -16.37 16 15 C -0.22 -6.32 10.69 -15.06 -0.16 -6.48 16 16 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 18 N -0.92 -27.26 11.51 55.49 0.64 -26.62 16 19 Si 0.91 22.15 29.56 -169.99 -5.02 17.13 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.13 2.59 8.51 -2.96 -0.03 2.56 16 24 N -0.52 -6.59 8.39 -9.87 -0.08 -6.67 16 25 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 26 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 28 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 30 H 0.15 1.50 7.63 -52.49 -0.40 1.10 16 31 H 0.41 5.79 7.80 -40.82 -0.32 5.47 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.21 7.88 -51.93 -0.41 0.80 16 34 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.03 0.70 7.92 -51.93 -0.41 0.29 16 36 H 0.07 1.72 7.37 -51.93 -0.38 1.34 16 37 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 337.93 15.07 5.09 5.09 Total: -1.00 -33.29 337.93 -7.33 -40.62 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.27 Total: 1.97 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -1.58 Total: 8.49 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.44 Total: -60.39 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.11 Total: -12.91 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.29 -7.33 -40.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032096602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.788 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds