Wall clock time and date at job start Tue Mar 31 2020 06:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35668 * 117.00394 * 2 1 4 4 C 1.39283 * 119.62021 * 179.97438 * 3 2 1 5 5 C 1.38326 * 119.30899 * 180.02562 * 4 3 2 6 6 C 1.38788 * 118.55881 * 0.02562 * 5 4 3 7 7 C 1.39130 * 119.18516 * 359.97438 * 6 5 4 8 8 C 1.48151 * 119.68943 * 180.02562 * 7 6 5 9 9 O 1.21513 * 119.99856 * 0.02562 * 8 7 6 10 10 N 1.34783 * 120.00004 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99687 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46570 * 180.02562 * 11 10 8 13 13 C 1.53947 * 113.73965 * 273.73751 * 12 11 10 14 14 N 1.47817 * 86.03668 * 222.08636 * 13 12 11 15 15 C 1.36930 * 134.45727 * 204.64293 * 14 13 12 16 16 H 1.08006 * 119.99738 * 173.34987 * 15 14 13 17 17 C 1.38810 * 120.00268 * 353.34979 * 15 14 13 18 18 N 1.31626 * 119.99756 * 5.06272 * 17 15 14 19 19 Si 1.86800 * 120.00258 * 185.06009 * 17 15 14 20 20 H 1.48506 * 109.46623 * 94.99034 * 19 17 15 21 21 H 1.48500 * 109.47243 * 214.98768 * 19 17 15 22 22 H 1.48497 * 109.46975 * 334.99044 * 19 17 15 23 23 C 1.47584 * 91.04847 * 24.55072 * 14 13 12 24 24 N 1.31905 * 119.61493 * 359.73488 * 3 2 1 25 25 H 1.09006 * 109.47085 * 59.99883 * 1 2 3 26 26 H 1.08993 * 109.47737 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47081 * 299.99962 * 1 2 3 28 28 H 1.08004 * 120.34821 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.72408 * 180.02562 * 5 4 3 30 30 H 1.07993 * 120.40987 * 179.97438 * 6 5 4 31 31 H 0.96997 * 119.99787 * 0.02562 * 10 8 7 32 32 H 1.09001 * 109.46709 * 299.99712 * 11 10 8 33 33 H 1.08997 * 109.47455 * 60.00423 * 11 10 8 34 34 H 1.08996 * 112.94762 * 45.33205 * 12 11 10 35 35 H 1.08994 * 113.77105 * 336.34902 * 13 12 11 36 36 H 1.08993 * 113.76783 * 107.74908 * 13 12 11 37 37 H 0.96998 * 120.00066 * 179.97438 * 18 17 15 38 38 H 1.09004 * 113.76742 * 221.15077 * 23 14 13 39 39 H 1.08998 * 113.77058 * 89.75609 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4363 1.2723 0.0005 5 6 4.0577 2.5082 0.0011 6 6 3.2666 3.6486 0.0016 7 6 1.8819 3.5137 0.0010 8 6 1.0268 4.7235 0.0010 9 8 1.5355 5.8270 0.0010 10 7 -0.3154 4.6001 -0.0001 11 6 -1.1609 5.7965 -0.0007 12 6 -2.6332 5.3803 -0.0012 13 6 -3.2040 5.1231 -1.4076 14 7 -4.4064 5.8444 -0.9397 15 6 -5.7272 5.8422 -1.3008 16 1 -6.4470 6.3991 -0.7191 17 6 -6.1412 5.1241 -2.4143 18 7 -5.2839 4.3660 -3.0645 19 14 -7.9149 5.2337 -2.9899 20 1 -8.0275 6.2647 -4.0529 21 1 -8.3425 3.9179 -3.5293 22 1 -8.7847 5.6059 -1.8453 23 6 -3.6124 6.5659 0.0737 24 7 1.3192 2.3102 -0.0053 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0240 0.3662 0.0014 29 1 5.1350 2.5841 0.0011 30 1 3.7203 4.6286 0.0024 31 1 -0.7214 3.7192 -0.0005 32 1 -0.9517 6.3896 0.8896 33 1 -0.9504 6.3898 -0.8904 34 1 -2.8505 4.5859 0.7127 35 1 -2.6640 5.6383 -2.2019 36 1 -3.3791 4.0694 -1.6247 37 1 -5.5733 3.8639 -3.8423 38 1 -4.1130 6.6620 1.0373 39 1 -3.1925 7.5058 -0.2845 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032096602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:13 Heat of formation + Delta-G solvation = -2.678387 kcal Electronic energy + Delta-G solvation = -22448.417056 eV Core-core repulsion = 18971.604608 eV Total energy + Delta-G solvation = -3476.812448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.90169 -40.63332 -39.66318 -38.60878 -35.86801 -34.26772 -33.59597 -31.94617 -30.56400 -28.42111 -27.71386 -26.57033 -25.43562 -23.94916 -23.61555 -21.91586 -20.88798 -19.47830 -18.76819 -18.67934 -17.27551 -17.13248 -16.99504 -16.96389 -16.80239 -16.35485 -15.84851 -15.55769 -15.14005 -14.94629 -14.62791 -14.36000 -14.19316 -13.90597 -13.33039 -13.20650 -13.12061 -12.89660 -12.69214 -12.55774 -12.24970 -12.17210 -11.87775 -11.67946 -11.54627 -11.25990 -11.01006 -10.88099 -10.68336 -10.15177 -9.60312 -8.92053 -7.93099 -5.25540 -0.41252 0.24184 1.44536 1.46727 1.55494 1.66304 1.99895 2.10758 2.46602 2.78786 2.96388 3.27426 3.38912 3.69999 3.84860 3.94331 4.04256 4.04633 4.26843 4.33055 4.44504 4.45457 4.49329 4.57562 4.75424 4.81503 4.82725 4.85569 4.95390 5.07492 5.12155 5.23996 5.33412 5.35768 5.52331 5.61845 5.91911 6.11213 6.34787 6.66032 6.90547 7.06428 7.59421 8.55860 9.24627 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020020 B = 0.003402 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.252531 B = 8227.302286 C = 9272.138086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.313 6.313 3 C 0.299 3.701 4 C -0.157 4.157 5 C -0.034 4.034 6 C -0.148 4.148 7 C 0.094 3.906 8 C 0.565 3.435 9 O -0.565 6.565 10 N -0.699 5.699 11 C 0.139 3.861 12 C -0.117 4.117 13 C 0.169 3.831 14 N -0.645 5.645 15 C -0.237 4.237 16 H 0.085 0.915 17 C -0.067 4.067 18 N -0.953 5.953 19 Si 0.977 3.023 20 H -0.290 1.290 21 H -0.293 1.293 22 H -0.265 1.265 23 C 0.128 3.872 24 N -0.533 5.533 25 H 0.050 0.950 26 H 0.122 0.878 27 H 0.058 0.942 28 H 0.176 0.824 29 H 0.193 0.807 30 H 0.156 0.844 31 H 0.414 0.586 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.012 0.988 36 H 0.038 0.962 37 H 0.248 0.752 38 H 0.064 0.936 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.549 -7.929 8.891 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.220 6.220 3 C 0.117 3.883 4 C -0.178 4.178 5 C -0.059 4.059 6 C -0.170 4.170 7 C -0.042 4.042 8 C 0.351 3.649 9 O -0.444 6.444 10 N -0.348 5.348 11 C 0.015 3.985 12 C -0.137 4.137 13 C 0.044 3.956 14 N -0.371 5.371 15 C -0.365 4.365 16 H 0.103 0.897 17 C -0.260 4.260 18 N -0.601 5.601 19 Si 0.806 3.194 20 H -0.217 1.217 21 H -0.220 1.220 22 H -0.190 1.190 23 C 0.003 3.997 24 N -0.261 5.261 25 H 0.069 0.931 26 H 0.140 0.860 27 H 0.076 0.924 28 H 0.194 0.806 29 H 0.210 0.790 30 H 0.173 0.827 31 H 0.251 0.749 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.030 0.970 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.748 -7.518 8.722 22.002 hybrid contribution -0.915 -0.116 -0.867 1.265 sum 17.833 -7.634 7.855 20.928 Atomic orbital electron populations 1.23039 0.76082 1.04728 1.02171 1.86233 1.23924 1.23932 1.87880 1.20220 0.90627 0.84200 0.93251 1.21737 0.90994 1.01519 1.03542 1.21917 1.02701 0.89250 0.92014 1.22216 0.92215 1.02272 1.00317 1.20654 0.92955 0.89552 1.01006 1.18209 0.82511 0.87802 0.76405 1.90750 1.74485 1.27080 1.52101 1.45886 1.05456 1.11239 1.72251 1.21329 0.88073 0.86858 1.02258 1.23428 0.91832 0.99729 0.98679 1.22186 0.84878 0.96203 0.92368 1.46372 1.02951 1.47171 1.40649 1.19456 0.83438 1.25736 1.07892 0.89711 1.25667 1.02210 1.00090 0.98063 1.70021 1.35404 1.32869 1.21829 0.85073 0.79518 0.76552 0.78300 1.21677 1.22002 1.18976 1.22692 0.89872 0.94093 0.93041 1.67022 1.42018 0.98567 1.18465 0.93108 0.85957 0.92353 0.80621 0.78956 0.82677 0.74925 0.89857 0.92295 0.88005 0.97001 0.94331 0.94285 0.91769 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.38 113.37 1.18 1.82 16 2 O -0.31 -6.56 10.48 -89.85 -0.94 -7.50 16 3 C 0.30 6.47 7.49 84.93 0.64 7.11 16 4 C -0.16 -2.30 10.05 22.54 0.23 -2.07 16 5 C -0.03 -0.42 10.16 22.42 0.23 -0.20 16 6 C -0.15 -2.90 9.63 22.62 0.22 -2.68 16 7 C 0.09 2.43 6.75 41.84 0.28 2.72 16 8 C 0.57 17.34 7.81 86.88 0.68 18.02 16 9 O -0.56 -19.88 16.32 -3.76 -0.06 -19.94 16 10 N -0.70 -20.89 5.55 -465.67 -2.58 -23.47 16 11 C 0.14 4.32 5.51 86.38 0.48 4.80 16 12 C -0.12 -4.16 3.93 -10.13 -0.04 -4.20 16 13 C 0.17 8.06 6.99 86.44 0.60 8.66 16 14 N -0.64 -33.36 3.70 -716.06 -2.65 -36.01 16 15 C -0.24 -13.45 10.69 84.03 0.90 -12.55 16 16 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 17 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 18 N -0.95 -58.14 11.51 21.65 0.25 -57.89 16 19 Si 0.98 46.07 29.56 68.60 2.03 48.10 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 C 0.13 5.03 8.51 86.49 0.74 5.76 16 24 N -0.53 -13.52 8.39 -298.20 -2.50 -16.03 16 25 H 0.05 1.08 8.10 -2.38 -0.02 1.06 16 26 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 1.11 8.11 -2.39 -0.02 1.09 16 28 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 29 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 30 H 0.16 2.85 7.63 -2.91 -0.02 2.82 16 31 H 0.41 11.89 7.80 -92.71 -0.72 11.16 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 33 H 0.06 2.01 7.88 -2.39 -0.02 1.99 16 34 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.01 0.61 7.92 -2.39 -0.02 0.59 16 36 H 0.04 2.04 7.37 -2.39 -0.02 2.02 16 37 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 38 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 Total: -1.00 -73.63 337.93 0.47 -73.16 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.34 Total: 15.80 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 6.59 Total: 23.77 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -7.48 Total: -133.39 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -1.00 Total: -27.44 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -73.63 0.47 -73.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032096602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.482 kcal (2) G-P(sol) polarization free energy of solvation -73.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds