Wall clock time and date at job start Tue Mar 31 2020 06:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 120.00032 * 2 1 4 4 O 1.21551 * 120.00143 * 185.71927 * 3 2 1 5 5 C 1.47834 * 120.00077 * 5.71552 * 3 2 1 6 6 N 1.32857 * 119.77910 * 6.19397 * 5 3 2 7 7 C 1.31378 * 121.69534 * 179.97438 * 6 5 3 8 8 C 1.38766 * 121.06551 * 359.97362 * 7 6 5 9 9 C 1.38306 * 119.44443 * 0.03310 * 8 7 6 10 10 C 1.39342 * 118.44011 * 359.71726 * 9 8 7 11 11 O 1.35648 * 120.54356 * 180.29014 * 10 9 8 12 12 C 1.46504 * 120.00189 * 179.97438 * 2 1 3 13 13 H 1.08993 * 110.64079 * 176.85296 * 12 2 1 14 14 C 1.55151 * 110.72186 * 300.00222 * 12 2 1 15 15 C 1.54902 * 101.58221 * 153.86250 * 14 12 2 16 16 N 1.47422 * 104.93108 * 322.93224 * 15 14 12 17 17 C 1.36937 * 125.65477 * 204.15385 * 16 15 14 18 18 H 1.07996 * 120.00346 * 180.02562 * 17 16 15 19 19 C 1.38818 * 119.99383 * 0.02822 * 17 16 15 20 20 N 1.31612 * 120.00435 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99601 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47446 * 59.99679 * 21 19 17 23 23 H 1.48496 * 109.47082 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46858 * 299.99613 * 21 19 17 25 25 C 1.47293 * 108.55561 * 24.15779 * 16 15 14 26 26 H 1.09000 * 109.46874 * 275.51435 * 1 2 3 27 27 H 1.08993 * 109.47209 * 35.51697 * 1 2 3 28 28 H 1.09000 * 109.47075 * 155.52269 * 1 2 3 29 29 H 1.08000 * 119.46698 * 180.02562 * 7 6 5 30 30 H 1.08006 * 120.27733 * 180.02562 * 8 7 6 31 31 H 1.07996 * 120.77977 * 179.97438 * 9 8 7 32 32 H 0.96700 * 113.99795 * 270.23267 * 11 10 9 33 33 H 1.09002 * 111.00647 * 35.78611 * 14 12 2 34 34 H 1.08998 * 111.03545 * 271.95180 * 14 12 2 35 35 H 1.09002 * 110.37220 * 81.82880 * 15 14 12 36 36 H 1.09006 * 110.36806 * 204.03870 * 15 14 12 37 37 H 0.96993 * 120.00317 * 179.97438 * 20 19 17 38 38 H 1.09004 * 109.85312 * 239.49698 * 25 16 15 39 39 H 1.09001 * 110.00485 * 118.43121 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3499 1.1699 -0.1049 5 6 1.4053 2.4443 0.1275 6 7 0.0982 2.4336 0.3653 7 6 -0.5906 3.5458 0.4859 8 6 0.0236 4.7846 0.3696 9 6 1.3828 4.8491 0.1219 10 6 2.0929 3.6561 0.0032 11 8 3.4285 3.6695 -0.2337 12 6 2.1976 -1.2687 0.0006 13 1 3.2717 -1.0922 -0.0555 14 6 1.8437 -2.1064 1.2576 15 6 2.1173 -3.5471 0.7585 16 7 1.6772 -3.5516 -0.6485 17 6 1.2875 -4.6551 -1.3595 18 1 0.9816 -4.5532 -2.3902 19 6 1.2857 -5.9049 -0.7552 20 7 1.6590 -6.0292 0.5008 21 14 0.7548 -7.4105 -1.7252 22 1 1.6460 -7.5816 -2.9007 23 1 0.8424 -8.6135 -0.8590 24 1 -0.6454 -7.2333 -2.1871 25 6 1.7274 -2.1711 -1.1597 26 1 -0.3633 0.0988 1.0229 27 1 -0.3633 0.8364 -0.5970 28 1 -0.3633 -0.9353 -0.4258 29 1 -1.6519 3.4950 0.6796 30 1 -0.5550 5.6910 0.4714 31 1 1.8827 5.8016 0.0270 32 1 3.6614 3.6718 -1.1722 33 1 0.7958 -1.9795 1.5295 34 1 2.4955 -1.8521 2.0935 35 1 3.1810 -3.7758 0.8240 36 1 1.5391 -4.2660 1.3391 37 1 1.6574 -6.9024 0.9231 38 1 0.7357 -1.8627 -1.4909 39 1 2.4318 -2.1059 -1.9890 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033024236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:05 Heat of formation + Delta-G solvation = 17.905195 kcal Electronic energy + Delta-G solvation = -23348.256594 eV Core-core repulsion = 19872.336717 eV Total energy + Delta-G solvation = -3475.919877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.06494 -39.18737 -37.60186 -37.06059 -34.68566 -32.83010 -31.88121 -30.57090 -29.16456 -27.43445 -26.58075 -25.01846 -24.06609 -23.50903 -21.01434 -20.16130 -19.04819 -18.63899 -17.57893 -17.11406 -16.83638 -16.13035 -15.82242 -15.31115 -14.85503 -14.62373 -14.05298 -13.95448 -13.71438 -13.54064 -13.01863 -12.91760 -12.74420 -12.30687 -12.12315 -11.79605 -11.48788 -11.31320 -11.00435 -10.80363 -10.76873 -10.42757 -10.16750 -10.12190 -10.03085 -9.76427 -9.53513 -9.27337 -9.17253 -8.63381 -8.20808 -6.82144 -5.62972 -3.05429 0.36120 0.79413 2.73182 3.09920 3.42290 3.46310 3.47855 3.54490 3.79839 4.05242 4.45683 4.46608 4.52312 4.64616 5.03997 5.15327 5.44836 5.47882 5.55170 5.60223 5.62900 5.67593 5.76744 5.90961 5.96892 6.07857 6.30049 6.34786 6.43004 6.60478 6.64341 6.76323 7.04567 7.31261 7.48099 7.53348 7.63177 7.67791 7.87218 8.32203 8.38130 9.23232 9.83686 10.48818 11.40560 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035348 B = 0.003488 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.939532 B = 8026.216268 C = 8329.075526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.580 5.580 3 C 0.561 3.439 4 O -0.525 6.525 5 C 0.056 3.944 6 N -0.431 5.431 7 C 0.081 3.919 8 C -0.136 4.136 9 C -0.115 4.115 10 C 0.119 3.881 11 O -0.469 6.469 12 C 0.124 3.876 13 H 0.103 0.897 14 C -0.151 4.151 15 C 0.153 3.847 16 N -0.602 5.602 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.916 3.084 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.129 3.871 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.166 0.834 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.014 0.986 36 H 0.110 0.890 37 H 0.253 0.747 38 H 0.031 0.969 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.798 22.729 -0.215 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.311 5.311 3 C 0.347 3.653 4 O -0.401 6.401 5 C -0.083 4.083 6 N -0.144 5.144 7 C -0.079 4.079 8 C -0.156 4.156 9 C -0.141 4.141 10 C 0.071 3.929 11 O -0.279 6.279 12 C 0.021 3.979 13 H 0.121 0.879 14 C -0.190 4.190 15 C 0.028 3.972 16 N -0.329 5.329 17 C -0.351 4.351 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.746 3.254 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.002 3.998 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.183 0.817 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.255 0.745 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.127 0.873 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.488 21.640 0.423 22.105 hybrid contribution 0.044 0.168 -1.017 1.031 sum -4.443 21.808 -0.593 22.264 Atomic orbital electron populations 1.22073 0.78432 1.02704 1.02353 1.47751 1.07882 1.05235 1.70220 1.17747 0.86597 0.82765 0.78215 1.90808 1.12845 1.86447 1.50028 1.21862 0.90336 0.94159 1.01908 1.68235 1.06171 1.30766 1.09248 1.22988 1.00837 0.87463 0.96610 1.22308 0.94738 0.99975 0.98613 1.21992 0.94362 0.98452 0.99290 1.19403 0.84585 0.91512 0.97444 1.84788 1.16569 1.95858 1.30701 1.22303 0.97013 0.81248 0.97302 0.87902 1.23374 1.00915 0.98847 0.95880 1.21938 0.98079 0.91340 0.85818 1.44483 1.77841 1.01070 1.09491 1.19023 1.36818 0.84653 0.94586 0.90515 1.24790 1.01772 0.97512 0.96522 1.69772 1.53806 1.22546 1.10935 0.86135 0.78363 0.82206 0.78672 1.21225 1.21571 1.21163 1.21574 0.97971 0.86254 0.93984 0.92496 0.89782 0.91046 0.81725 0.84016 0.83675 0.74506 0.91654 0.92138 0.96753 0.87272 0.93640 0.95124 0.95684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 7.87 59.85 0.47 1.75 16 2 N -0.58 -9.97 2.89 -172.96 -0.50 -10.47 16 3 C 0.56 9.60 7.64 -12.33 -0.09 9.51 16 4 O -0.53 -10.30 14.54 -16.55 -0.24 -10.54 16 5 C 0.06 0.77 6.58 -82.88 -0.55 0.22 16 6 N -0.43 -5.10 6.16 -9.71 -0.06 -5.16 16 7 C 0.08 0.66 11.17 -17.55 -0.20 0.46 16 8 C -0.14 -0.90 10.10 -39.36 -0.40 -1.30 16 9 C -0.11 -0.93 10.13 -39.15 -0.40 -1.32 16 10 C 0.12 1.39 6.74 -38.56 -0.26 1.13 16 11 O -0.47 -5.64 11.60 -40.51 -0.47 -6.11 16 12 C 0.12 2.46 3.36 -66.10 -0.22 2.24 16 13 H 0.10 2.16 7.00 -51.93 -0.36 1.80 16 14 C -0.15 -3.06 6.66 -24.59 -0.16 -3.23 16 15 C 0.15 3.83 5.88 -2.53 -0.01 3.82 16 16 N -0.60 -15.77 3.40 -169.85 -0.58 -16.35 16 17 C -0.22 -6.27 10.28 -15.06 -0.15 -6.42 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 20 N -0.92 -27.05 10.09 55.49 0.56 -26.49 16 21 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.13 2.83 6.78 -2.91 -0.02 2.81 16 26 H 0.06 0.80 7.99 -51.93 -0.41 0.39 16 27 H 0.08 1.11 5.80 -51.93 -0.30 0.81 16 28 H 0.07 1.13 6.17 -51.93 -0.32 0.81 16 29 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.14 0.47 8.06 -52.48 -0.42 0.04 16 31 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.40 3.14 9.06 45.56 0.41 3.55 16 33 H 0.06 1.29 7.34 -51.93 -0.38 0.91 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.11 3.02 5.87 -51.93 -0.30 2.71 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.03 0.65 6.01 -51.93 -0.31 0.34 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 318.20 15.07 4.80 4.80 Total: -1.00 -34.19 318.20 -7.67 -41.86 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.07 Total: 2.05 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -2.09 Total: 9.27 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.58 Total: -58.46 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.71 Total: -16.66 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.19 -7.67 -41.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033024236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.766 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds