Wall clock time and date at job start Tue Mar 31 2020 06:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 120.00032 * 2 1 4 4 O 1.21551 * 120.00143 * 185.71927 * 3 2 1 5 5 C 1.47834 * 120.00077 * 5.71552 * 3 2 1 6 6 N 1.32857 * 119.77910 * 6.19397 * 5 3 2 7 7 C 1.31378 * 121.69534 * 179.97438 * 6 5 3 8 8 C 1.38766 * 121.06551 * 359.97362 * 7 6 5 9 9 C 1.38306 * 119.44443 * 0.03310 * 8 7 6 10 10 C 1.39342 * 118.44011 * 359.71726 * 9 8 7 11 11 O 1.35648 * 120.54356 * 180.29014 * 10 9 8 12 12 C 1.46504 * 120.00189 * 179.97438 * 2 1 3 13 13 H 1.08993 * 110.64079 * 176.85296 * 12 2 1 14 14 C 1.55151 * 110.72186 * 300.00222 * 12 2 1 15 15 C 1.54902 * 101.58221 * 153.86250 * 14 12 2 16 16 N 1.47422 * 104.93108 * 322.93224 * 15 14 12 17 17 C 1.36937 * 125.65477 * 204.15385 * 16 15 14 18 18 H 1.07996 * 120.00346 * 180.02562 * 17 16 15 19 19 C 1.38818 * 119.99383 * 0.02822 * 17 16 15 20 20 N 1.31612 * 120.00435 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99601 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47446 * 59.99679 * 21 19 17 23 23 H 1.48496 * 109.47082 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46858 * 299.99613 * 21 19 17 25 25 C 1.47293 * 108.55561 * 24.15779 * 16 15 14 26 26 H 1.09000 * 109.46874 * 275.51435 * 1 2 3 27 27 H 1.08993 * 109.47209 * 35.51697 * 1 2 3 28 28 H 1.09000 * 109.47075 * 155.52269 * 1 2 3 29 29 H 1.08000 * 119.46698 * 180.02562 * 7 6 5 30 30 H 1.08006 * 120.27733 * 180.02562 * 8 7 6 31 31 H 1.07996 * 120.77977 * 179.97438 * 9 8 7 32 32 H 0.96700 * 113.99795 * 270.23267 * 11 10 9 33 33 H 1.09002 * 111.00647 * 35.78611 * 14 12 2 34 34 H 1.08998 * 111.03545 * 271.95180 * 14 12 2 35 35 H 1.09002 * 110.37220 * 81.82880 * 15 14 12 36 36 H 1.09006 * 110.36806 * 204.03870 * 15 14 12 37 37 H 0.96993 * 120.00317 * 179.97438 * 20 19 17 38 38 H 1.09004 * 109.85312 * 239.49698 * 25 16 15 39 39 H 1.09001 * 110.00485 * 118.43121 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3499 1.1699 -0.1049 5 6 1.4053 2.4443 0.1275 6 7 0.0982 2.4336 0.3653 7 6 -0.5906 3.5458 0.4859 8 6 0.0236 4.7846 0.3696 9 6 1.3828 4.8491 0.1219 10 6 2.0929 3.6561 0.0032 11 8 3.4285 3.6695 -0.2337 12 6 2.1976 -1.2687 0.0006 13 1 3.2717 -1.0922 -0.0555 14 6 1.8437 -2.1064 1.2576 15 6 2.1173 -3.5471 0.7585 16 7 1.6772 -3.5516 -0.6485 17 6 1.2875 -4.6551 -1.3595 18 1 0.9816 -4.5532 -2.3902 19 6 1.2857 -5.9049 -0.7552 20 7 1.6590 -6.0292 0.5008 21 14 0.7548 -7.4105 -1.7252 22 1 1.6460 -7.5816 -2.9007 23 1 0.8424 -8.6135 -0.8590 24 1 -0.6454 -7.2333 -2.1871 25 6 1.7274 -2.1711 -1.1597 26 1 -0.3633 0.0988 1.0229 27 1 -0.3633 0.8364 -0.5970 28 1 -0.3633 -0.9353 -0.4258 29 1 -1.6519 3.4950 0.6796 30 1 -0.5550 5.6910 0.4714 31 1 1.8827 5.8016 0.0270 32 1 3.6614 3.6718 -1.1722 33 1 0.7958 -1.9795 1.5295 34 1 2.4955 -1.8521 2.0935 35 1 3.1810 -3.7758 0.8240 36 1 1.5391 -4.2660 1.3391 37 1 1.6574 -6.9024 0.9231 38 1 0.7357 -1.8627 -1.4909 39 1 2.4318 -2.1059 -1.9890 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033024236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:05 Heat of formation + Delta-G solvation = -5.766337 kcal Electronic energy + Delta-G solvation = -23349.283068 eV Core-core repulsion = 19872.336717 eV Total energy + Delta-G solvation = -3476.946351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.99421 -40.44737 -38.87270 -38.26761 -36.22022 -34.23018 -33.20188 -31.48711 -30.99845 -29.15463 -27.86485 -26.65025 -25.34122 -24.28890 -22.30171 -22.14157 -20.47789 -19.45239 -18.97514 -18.71425 -17.92762 -17.27645 -16.92141 -16.66949 -16.33950 -15.86073 -15.79644 -15.30870 -14.75924 -14.44590 -14.41332 -14.21131 -13.94001 -13.78760 -13.64037 -13.36231 -13.02380 -12.96202 -12.66264 -12.43055 -12.26345 -12.18871 -12.06352 -11.82460 -11.43698 -11.25855 -10.82894 -10.75749 -10.16204 -10.02632 -9.59018 -8.93302 -7.77864 -5.24302 -0.43584 0.14589 1.47644 1.51550 1.57877 1.67773 1.84036 2.50315 2.71056 2.98978 3.19034 3.32089 3.61810 3.72320 3.85416 3.91392 3.93295 4.03706 4.18487 4.33941 4.43785 4.53442 4.59612 4.64724 4.77431 4.85159 4.93808 4.98803 5.05234 5.06138 5.16811 5.43758 5.52248 5.54912 5.59893 5.74969 6.26553 6.33467 6.62227 6.74930 7.06757 7.07832 7.73116 8.38113 9.23912 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035348 B = 0.003488 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.939532 B = 8026.216268 C = 8329.075526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.584 5.584 3 C 0.556 3.444 4 O -0.562 6.562 5 C 0.019 3.981 6 N -0.451 5.451 7 C 0.079 3.921 8 C -0.109 4.109 9 C -0.111 4.111 10 C 0.108 3.892 11 O -0.490 6.490 12 C 0.139 3.861 13 H 0.087 0.913 14 C -0.132 4.132 15 C 0.159 3.841 16 N -0.621 5.621 17 C -0.243 4.243 18 H 0.082 0.918 19 C -0.064 4.064 20 N -0.949 5.949 21 Si 0.985 3.015 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.273 1.273 25 C 0.131 3.869 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.200 0.800 30 H 0.188 0.812 31 H 0.174 0.826 32 H 0.409 0.591 33 H 0.075 0.925 34 H 0.074 0.926 35 H -0.013 1.013 36 H 0.083 0.917 37 H 0.249 0.751 38 H 0.044 0.956 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 25.559 -0.501 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.315 5.315 3 C 0.345 3.655 4 O -0.441 6.441 5 C -0.117 4.117 6 N -0.165 5.165 7 C -0.082 4.082 8 C -0.129 4.129 9 C -0.137 4.137 10 C 0.059 3.941 11 O -0.302 6.302 12 C 0.035 3.965 13 H 0.105 0.895 14 C -0.171 4.171 15 C 0.033 3.967 16 N -0.348 5.348 17 C -0.372 4.372 18 H 0.100 0.900 19 C -0.257 4.257 20 N -0.598 5.598 21 Si 0.813 3.187 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.199 1.199 25 C 0.005 3.995 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.217 0.783 30 H 0.205 0.795 31 H 0.191 0.809 32 H 0.269 0.731 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.005 0.995 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -6.704 24.503 0.116 25.404 hybrid contribution 0.677 -0.542 -0.930 1.272 sum -6.027 23.962 -0.814 24.721 Atomic orbital electron populations 1.22133 0.76785 1.02635 1.03081 1.47753 1.08712 1.04320 1.70692 1.18372 0.86480 0.83788 0.76868 1.90767 1.14547 1.87186 1.51610 1.21366 0.91452 0.92763 1.06092 1.68058 1.05337 1.32977 1.10085 1.23670 1.02170 0.87114 0.95217 1.22825 0.94174 1.01076 0.94817 1.22324 0.95022 0.98054 0.98276 1.19679 0.84439 0.92188 0.97782 1.84735 1.17433 1.95954 1.32088 1.21861 0.96474 0.82363 0.95840 0.89518 1.23159 1.01771 0.95776 0.96434 1.21697 0.95809 0.93608 0.85574 1.44745 1.77757 1.02276 1.10039 1.19420 1.36894 0.85698 0.95154 0.89993 1.25674 1.02064 1.00376 0.97585 1.70017 1.54668 1.22770 1.12356 0.85058 0.78366 0.78117 0.77184 1.20629 1.21838 1.19891 1.21634 0.98409 0.84905 0.94549 0.91743 0.87941 0.92451 0.78315 0.79473 0.80854 0.73098 0.90654 0.90763 0.99487 0.89957 0.94141 0.93845 0.96436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.72 7.87 127.77 1.01 3.73 16 2 N -0.58 -20.20 2.89 -819.39 -2.36 -22.57 16 3 C 0.56 19.32 7.64 86.78 0.66 19.98 16 4 O -0.56 -22.87 14.54 17.04 0.25 -22.62 16 5 C 0.02 0.51 6.58 41.93 0.28 0.79 16 6 N -0.45 -9.62 6.16 -184.63 -1.14 -10.76 16 7 C 0.08 0.95 11.17 84.89 0.95 1.90 16 8 C -0.11 -0.87 10.10 22.41 0.23 -0.64 16 9 C -0.11 -1.37 10.13 22.55 0.23 -1.14 16 10 C 0.11 2.36 6.74 22.93 0.15 2.52 16 11 O -0.49 -11.68 11.60 -68.71 -0.80 -12.48 16 12 C 0.14 5.64 3.36 46.18 0.16 5.79 16 13 H 0.09 3.81 7.00 -2.39 -0.02 3.79 16 14 C -0.13 -5.47 6.66 31.98 0.21 -5.26 16 15 C 0.16 8.25 5.88 86.85 0.51 8.76 16 16 N -0.62 -33.52 3.40 -691.30 -2.35 -35.87 16 17 C -0.24 -13.96 10.28 84.03 0.86 -13.09 16 18 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 19 C -0.06 -3.70 5.49 84.86 0.47 -3.23 16 20 N -0.95 -57.29 10.09 21.65 0.22 -57.07 16 21 Si 0.99 46.02 29.55 68.60 2.03 48.05 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 C 0.13 5.90 6.78 86.68 0.59 6.49 16 26 H 0.06 1.74 7.99 -2.39 -0.02 1.72 16 27 H 0.10 2.56 5.80 -2.39 -0.01 2.54 16 28 H 0.06 1.78 6.17 -2.39 -0.01 1.77 16 29 H 0.20 0.94 8.06 -2.91 -0.02 0.91 16 30 H 0.19 -0.14 8.06 -2.91 -0.02 -0.16 16 31 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 32 H 0.41 6.58 9.06 -74.06 -0.67 5.91 16 33 H 0.07 2.97 7.34 -2.39 -0.02 2.95 16 34 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 35 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 36 H 0.08 4.76 5.87 -2.38 -0.01 4.74 16 37 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 38 H 0.04 1.86 6.01 -2.39 -0.01 1.84 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -77.48 318.20 2.56 -74.92 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.42 Total: 11.82 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: 6.30 Total: 26.58 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -5.64 Total: -126.27 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.55 Total: -35.10 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -77.48 2.56 -74.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033024236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.151 kcal (2) G-P(sol) polarization free energy of solvation -77.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds