Wall clock time and date at job start Tue Mar 31 2020 06:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 119.99837 * 2 1 4 4 O 1.21556 * 120.00062 * 182.95773 * 3 2 1 5 5 C 1.47832 * 120.00091 * 2.95841 * 3 2 1 6 6 N 1.32860 * 119.78261 * 353.71754 * 5 3 2 7 7 C 1.31376 * 121.69740 * 179.67543 * 6 5 3 8 8 C 1.38766 * 121.06312 * 0.63706 * 7 6 5 9 9 C 1.38304 * 119.44854 * 359.40074 * 8 7 6 10 10 C 1.39341 * 118.43662 * 0.27489 * 9 8 7 11 11 O 1.35646 * 120.54182 * 180.02562 * 10 9 8 12 12 C 1.46496 * 120.00476 * 180.02562 * 2 1 3 13 13 H 1.08996 * 110.64739 * 178.30960 * 12 2 1 14 14 C 1.55161 * 110.71930 * 54.97584 * 12 2 1 15 15 C 1.54913 * 101.58188 * 277.14077 * 14 12 2 16 16 N 1.47426 * 104.83298 * 322.99243 * 15 14 12 17 17 C 1.36934 * 125.65184 * 204.16718 * 16 15 14 18 18 H 1.07991 * 120.00442 * 179.97438 * 17 16 15 19 19 C 1.38814 * 119.99558 * 359.95464 * 17 16 15 20 20 N 1.31617 * 120.00394 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99924 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47215 * 59.99743 * 21 19 17 23 23 H 1.48497 * 109.47130 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46918 * 299.99664 * 21 19 17 25 25 C 1.47027 * 108.70120 * 24.12535 * 16 15 14 26 26 H 1.08997 * 109.47150 * 84.04327 * 1 2 3 27 27 H 1.08995 * 109.46876 * 204.04567 * 1 2 3 28 28 H 1.09004 * 109.47252 * 324.04314 * 1 2 3 29 29 H 1.08001 * 119.46835 * 180.31583 * 7 6 5 30 30 H 1.07998 * 120.27505 * 179.67270 * 8 7 6 31 31 H 1.07994 * 120.78201 * 180.24947 * 9 8 7 32 32 H 0.96705 * 114.00006 * 89.99662 * 11 10 9 33 33 H 1.09001 * 110.99919 * 35.21040 * 14 12 2 34 34 H 1.09000 * 111.00480 * 159.06722 * 14 12 2 35 35 H 1.08994 * 110.36686 * 204.14825 * 15 14 12 36 36 H 1.09003 * 110.45908 * 81.87131 * 15 14 12 37 37 H 0.96993 * 120.00371 * 180.02562 * 20 19 17 38 38 H 1.09002 * 109.88336 * 239.52574 * 25 16 15 39 39 H 1.09001 * 109.88269 * 118.36557 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3532 1.1680 -0.0543 5 6 1.4012 2.4466 0.0661 6 7 0.0742 2.4475 -0.0009 7 6 -0.6193 3.5617 0.0605 8 6 0.0112 4.7915 0.1854 9 6 1.3913 4.8438 0.2588 10 6 2.1047 3.6485 0.1982 11 8 3.4594 3.6501 0.2668 12 6 2.1976 -1.2686 -0.0006 13 1 3.2726 -1.0916 -0.0306 14 6 1.7508 -2.1600 -1.1894 15 6 0.4720 -2.8220 -0.6184 16 7 0.7745 -3.0624 0.8043 17 6 0.1823 -4.0086 1.5975 18 1 0.4753 -4.1062 2.6323 19 6 -0.7952 -4.8421 1.0714 20 7 -1.1531 -4.7226 -0.1896 21 14 -1.6038 -6.1324 2.1534 22 1 -2.2772 -5.4674 3.2978 23 1 -2.6070 -6.8863 1.3594 24 1 -0.5702 -7.0689 2.6634 25 6 1.8183 -2.1186 1.2303 26 1 -0.3633 0.1066 -1.0221 27 1 -0.3633 -0.9385 0.4187 28 1 -0.3634 0.8319 0.6034 29 1 -1.6972 3.5201 0.0076 30 1 -0.5713 5.6999 0.2293 31 1 1.9039 5.7889 0.3603 32 1 3.8078 3.5795 1.1662 33 1 1.5193 -1.5548 -2.0660 34 1 2.5078 -2.9089 -1.4223 35 1 0.2726 -3.7644 -1.1284 36 1 -0.3810 -2.1505 -0.7165 37 1 -1.8363 -5.3048 -0.5571 38 1 2.6910 -2.6666 1.5856 39 1 1.4351 -1.4746 2.0218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033024237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:08 Heat of formation + Delta-G solvation = 25.385115 kcal Electronic energy + Delta-G solvation = -23715.831105 eV Core-core repulsion = 20240.235582 eV Total energy + Delta-G solvation = -3475.595523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.00499 -39.21024 -37.58383 -37.09107 -34.33446 -32.78548 -31.77132 -30.47883 -29.13165 -27.88879 -26.11969 -24.95012 -23.89725 -23.51010 -21.15417 -20.12234 -18.97690 -18.57838 -17.43608 -17.06458 -16.76400 -16.11260 -15.75828 -15.25230 -14.75694 -14.65523 -14.12098 -13.73885 -13.72690 -13.46898 -13.09371 -12.71068 -12.48282 -12.08498 -11.98809 -11.76588 -11.51351 -11.26506 -11.03210 -10.85550 -10.76369 -10.21628 -10.11990 -10.09214 -9.94209 -9.82721 -9.51790 -9.15804 -8.91024 -8.59413 -8.08930 -6.82276 -5.63916 -3.05922 0.44339 0.86859 2.81744 3.21548 3.41341 3.45726 3.46831 3.62438 3.89018 4.14419 4.50089 4.53316 4.57029 4.72372 5.11029 5.23400 5.46484 5.50913 5.52355 5.68669 5.70837 5.78142 5.93895 5.98634 6.14643 6.28467 6.36422 6.44651 6.62011 6.67342 6.71243 6.81898 7.10944 7.37597 7.53081 7.57090 7.63529 7.80121 7.88292 8.37104 8.43203 9.23005 9.83538 10.48585 11.39425 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026898 B = 0.004072 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.713396 B = 6873.791472 C = 7385.242169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.570 5.570 3 C 0.559 3.441 4 O -0.533 6.533 5 C 0.057 3.943 6 N -0.427 5.427 7 C 0.081 3.919 8 C -0.137 4.137 9 C -0.114 4.114 10 C 0.117 3.883 11 O -0.470 6.470 12 C 0.123 3.877 13 H 0.099 0.901 14 C -0.153 4.153 15 C 0.144 3.856 16 N -0.602 5.602 17 C -0.223 4.223 18 H 0.076 0.924 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.129 3.871 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.166 0.834 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.396 0.604 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.025 0.975 37 H 0.252 0.748 38 H 0.033 0.967 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.137 19.184 0.572 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.301 5.301 3 C 0.345 3.655 4 O -0.410 6.410 5 C -0.081 4.081 6 N -0.140 5.140 7 C -0.079 4.079 8 C -0.157 4.157 9 C -0.141 4.141 10 C 0.068 3.932 11 O -0.279 6.279 12 C 0.019 3.981 13 H 0.117 0.883 14 C -0.193 4.193 15 C 0.020 3.980 16 N -0.329 5.329 17 C -0.351 4.351 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.002 3.998 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.183 0.817 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.254 0.746 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.204 18.212 -0.160 18.346 hybrid contribution -0.159 0.226 1.098 1.133 sum 2.045 18.439 0.938 18.575 Atomic orbital electron populations 1.22722 0.77772 1.05205 1.02298 1.47737 1.08322 1.04749 1.69243 1.17769 0.86608 0.82859 0.78300 1.90782 1.12597 1.86626 1.51037 1.21908 0.90168 0.94175 1.01816 1.68355 1.06219 1.29621 1.09792 1.23070 1.01083 0.87559 0.96179 1.22299 0.94538 1.00009 0.98895 1.21974 0.94493 0.98394 0.99198 1.19385 0.84676 0.91527 0.97573 1.84781 1.14539 1.95387 1.33220 1.22216 0.96417 0.82134 0.97295 0.88269 1.23337 1.01542 0.98171 0.96231 1.22148 0.90642 1.00664 0.84580 1.44530 1.42753 1.37562 1.08054 1.19021 1.14954 1.08315 0.92825 0.90603 1.24762 0.99363 0.99857 0.96489 1.69789 1.34001 1.41092 1.12118 0.86164 0.78881 0.81320 0.79177 1.21281 1.21604 1.21219 1.21626 0.92762 0.91381 0.94054 0.93249 0.88801 0.88406 0.81691 0.84051 0.83728 0.74626 0.92054 0.91020 0.87712 0.95745 0.93704 0.94939 0.95612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.10 7.63 59.85 0.46 1.56 16 2 N -0.57 -10.52 2.82 -172.96 -0.49 -11.01 16 3 C 0.56 10.00 7.65 -12.33 -0.09 9.91 16 4 O -0.53 -10.53 14.54 -16.54 -0.24 -10.77 16 5 C 0.06 0.85 6.65 -82.88 -0.55 0.30 16 6 N -0.43 -5.71 5.99 -9.71 -0.06 -5.77 16 7 C 0.08 0.77 11.17 -17.55 -0.20 0.57 16 8 C -0.14 -1.05 10.10 -39.36 -0.40 -1.44 16 9 C -0.11 -1.01 10.13 -39.15 -0.40 -1.41 16 10 C 0.12 1.45 6.74 -38.55 -0.26 1.19 16 11 O -0.47 -5.85 11.60 -40.50 -0.47 -6.32 16 12 C 0.12 2.40 3.58 -66.10 -0.24 2.17 16 13 H 0.10 1.92 6.99 -51.93 -0.36 1.56 16 14 C -0.15 -3.08 6.53 -24.58 -0.16 -3.24 16 15 C 0.14 3.45 4.99 -2.53 -0.01 3.44 16 16 N -0.60 -15.25 2.97 -170.07 -0.51 -15.76 16 17 C -0.22 -6.14 10.27 -15.06 -0.15 -6.30 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -26.40 10.09 55.49 0.56 -25.84 16 21 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.13 2.79 6.30 -3.06 -0.02 2.77 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.09 1.96 4.75 -51.93 -0.25 1.72 16 28 H 0.10 1.60 5.13 -53.85 -0.28 1.32 16 29 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 30 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 31 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.40 3.30 9.06 45.56 0.41 3.71 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.11 2.85 5.87 -51.93 -0.31 2.54 16 36 H 0.02 0.61 5.54 -51.93 -0.29 0.32 16 37 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 LS Contribution 314.39 15.07 4.74 4.74 Total: -1.00 -33.04 314.39 -7.60 -40.63 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -3.99 Total: 4.06 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -2.12 Total: 9.17 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.49 Total: -58.38 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.71 Total: -17.09 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.04 -7.60 -40.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033024237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.020 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds