Wall clock time and date at job start Tue Mar 31 2020 06:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 119.99837 * 2 1 4 4 O 1.21556 * 120.00062 * 182.95773 * 3 2 1 5 5 C 1.47832 * 120.00091 * 2.95841 * 3 2 1 6 6 N 1.32860 * 119.78261 * 353.71754 * 5 3 2 7 7 C 1.31376 * 121.69740 * 179.67543 * 6 5 3 8 8 C 1.38766 * 121.06312 * 0.63706 * 7 6 5 9 9 C 1.38304 * 119.44854 * 359.40074 * 8 7 6 10 10 C 1.39341 * 118.43662 * 0.27489 * 9 8 7 11 11 O 1.35646 * 120.54182 * 180.02562 * 10 9 8 12 12 C 1.46496 * 120.00476 * 180.02562 * 2 1 3 13 13 H 1.08996 * 110.64739 * 178.30960 * 12 2 1 14 14 C 1.55161 * 110.71930 * 54.97584 * 12 2 1 15 15 C 1.54913 * 101.58188 * 277.14077 * 14 12 2 16 16 N 1.47426 * 104.83298 * 322.99243 * 15 14 12 17 17 C 1.36934 * 125.65184 * 204.16718 * 16 15 14 18 18 H 1.07991 * 120.00442 * 179.97438 * 17 16 15 19 19 C 1.38814 * 119.99558 * 359.95464 * 17 16 15 20 20 N 1.31617 * 120.00394 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99924 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47215 * 59.99743 * 21 19 17 23 23 H 1.48497 * 109.47130 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46918 * 299.99664 * 21 19 17 25 25 C 1.47027 * 108.70120 * 24.12535 * 16 15 14 26 26 H 1.08997 * 109.47150 * 84.04327 * 1 2 3 27 27 H 1.08995 * 109.46876 * 204.04567 * 1 2 3 28 28 H 1.09004 * 109.47252 * 324.04314 * 1 2 3 29 29 H 1.08001 * 119.46835 * 180.31583 * 7 6 5 30 30 H 1.07998 * 120.27505 * 179.67270 * 8 7 6 31 31 H 1.07994 * 120.78201 * 180.24947 * 9 8 7 32 32 H 0.96705 * 114.00006 * 89.99662 * 11 10 9 33 33 H 1.09001 * 110.99919 * 35.21040 * 14 12 2 34 34 H 1.09000 * 111.00480 * 159.06722 * 14 12 2 35 35 H 1.08994 * 110.36686 * 204.14825 * 15 14 12 36 36 H 1.09003 * 110.45908 * 81.87131 * 15 14 12 37 37 H 0.96993 * 120.00371 * 180.02562 * 20 19 17 38 38 H 1.09002 * 109.88336 * 239.52574 * 25 16 15 39 39 H 1.09001 * 109.88269 * 118.36557 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3532 1.1680 -0.0543 5 6 1.4012 2.4466 0.0661 6 7 0.0742 2.4475 -0.0009 7 6 -0.6193 3.5617 0.0605 8 6 0.0112 4.7915 0.1854 9 6 1.3913 4.8438 0.2588 10 6 2.1047 3.6485 0.1982 11 8 3.4594 3.6501 0.2668 12 6 2.1976 -1.2686 -0.0006 13 1 3.2726 -1.0916 -0.0306 14 6 1.7508 -2.1600 -1.1894 15 6 0.4720 -2.8220 -0.6184 16 7 0.7745 -3.0624 0.8043 17 6 0.1823 -4.0086 1.5975 18 1 0.4753 -4.1062 2.6323 19 6 -0.7952 -4.8421 1.0714 20 7 -1.1531 -4.7226 -0.1896 21 14 -1.6038 -6.1324 2.1534 22 1 -2.2772 -5.4674 3.2978 23 1 -2.6070 -6.8863 1.3594 24 1 -0.5702 -7.0689 2.6634 25 6 1.8183 -2.1186 1.2303 26 1 -0.3633 0.1066 -1.0221 27 1 -0.3633 -0.9385 0.4187 28 1 -0.3634 0.8319 0.6034 29 1 -1.6972 3.5201 0.0076 30 1 -0.5713 5.6999 0.2293 31 1 1.9039 5.7889 0.3603 32 1 3.8078 3.5795 1.1662 33 1 1.5193 -1.5548 -2.0660 34 1 2.5078 -2.9089 -1.4223 35 1 0.2726 -3.7644 -1.1284 36 1 -0.3810 -2.1505 -0.7165 37 1 -1.8363 -5.3048 -0.5571 38 1 2.6910 -2.6666 1.5856 39 1 1.4351 -1.4746 2.0218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033024237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:07 Heat of formation + Delta-G solvation = 3.160285 kcal Electronic energy + Delta-G solvation = -23716.794846 eV Core-core repulsion = 20240.235582 eV Total energy + Delta-G solvation = -3476.559264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.02762 -40.54214 -38.91278 -38.25057 -35.93513 -34.18834 -33.13543 -31.47797 -30.90980 -29.59421 -27.62255 -26.53309 -25.29096 -24.35275 -22.45648 -22.04023 -20.42056 -19.44997 -18.95872 -18.61828 -17.92626 -17.32942 -16.90821 -16.66119 -16.36550 -15.91515 -15.57282 -15.44131 -14.66781 -14.53715 -14.30477 -14.21521 -13.77866 -13.70399 -13.53384 -13.30034 -13.07568 -12.94665 -12.74804 -12.48405 -12.32687 -12.05387 -11.87027 -11.73618 -11.42914 -11.23036 -10.85074 -10.68844 -10.09240 -9.94192 -9.54197 -8.87054 -7.74451 -5.19229 -0.43429 0.13391 1.49010 1.51684 1.58156 1.69189 1.90946 2.51542 2.70158 3.00335 3.19451 3.35570 3.62213 3.72548 3.85981 3.91213 3.99773 4.02945 4.25164 4.41555 4.49679 4.53022 4.63046 4.70484 4.81960 4.87855 4.97998 5.00721 5.04281 5.08809 5.23130 5.47228 5.54754 5.60109 5.69393 5.83433 6.31881 6.37809 6.62382 6.75038 7.08814 7.12747 7.78196 8.43036 9.26769 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026898 B = 0.004072 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.713396 B = 6873.791472 C = 7385.242169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.578 5.578 3 C 0.556 3.444 4 O -0.560 6.560 5 C 0.018 3.982 6 N -0.455 5.455 7 C 0.075 3.925 8 C -0.109 4.109 9 C -0.108 4.108 10 C 0.110 3.890 11 O -0.487 6.487 12 C 0.133 3.867 13 H 0.104 0.896 14 C -0.139 4.139 15 C 0.153 3.847 16 N -0.618 5.618 17 C -0.241 4.241 18 H 0.078 0.922 19 C -0.060 4.060 20 N -0.945 5.945 21 Si 0.980 3.020 22 H -0.279 1.279 23 H -0.293 1.293 24 H -0.280 1.280 25 C 0.131 3.869 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.116 0.884 29 H 0.195 0.805 30 H 0.189 0.811 31 H 0.177 0.823 32 H 0.409 0.591 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.014 0.986 37 H 0.248 0.752 38 H 0.036 0.964 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 21.909 1.134 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.308 5.308 3 C 0.345 3.655 4 O -0.439 6.439 5 C -0.118 4.118 6 N -0.169 5.169 7 C -0.085 4.085 8 C -0.129 4.129 9 C -0.134 4.134 10 C 0.061 3.939 11 O -0.299 6.299 12 C 0.029 3.971 13 H 0.122 0.878 14 C -0.179 4.179 15 C 0.028 3.972 16 N -0.345 5.345 17 C -0.370 4.370 18 H 0.096 0.904 19 C -0.252 4.252 20 N -0.594 5.594 21 Si 0.808 3.192 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.206 1.206 25 C 0.005 3.995 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.133 0.867 29 H 0.212 0.788 30 H 0.206 0.794 31 H 0.195 0.805 32 H 0.269 0.731 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.032 0.968 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.569 20.956 0.419 21.019 hybrid contribution 0.011 -0.448 0.940 1.041 sum 1.580 20.508 1.359 20.614 Atomic orbital electron populations 1.22553 0.77483 1.03880 1.02293 1.47761 1.08397 1.04655 1.70016 1.18316 0.86574 0.83679 0.76976 1.90742 1.13773 1.87236 1.52171 1.21486 0.91029 0.93193 1.06103 1.68070 1.05769 1.32069 1.10951 1.23676 1.02345 0.87369 0.95118 1.22802 0.94219 1.00877 0.95002 1.22334 0.95067 0.98104 0.97900 1.19622 0.84638 0.92019 0.97572 1.84726 1.15055 1.95422 1.34720 1.21985 0.96764 0.82602 0.95710 0.87798 1.23187 0.99696 0.98274 0.96720 1.21899 0.92165 0.99001 0.84113 1.44724 1.43354 1.37851 1.08524 1.19364 1.15344 1.08943 0.93345 0.90426 1.25557 1.00064 1.01833 0.97794 1.70031 1.34217 1.41690 1.13491 0.85143 0.77769 0.78757 0.77553 1.20505 1.21869 1.20574 1.21667 0.91841 0.91033 0.94947 0.93313 0.92292 0.86688 0.78782 0.79418 0.80536 0.73054 0.90832 0.90438 0.91024 0.96833 0.94275 0.94606 0.96026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.90 7.63 127.77 0.97 3.88 16 2 N -0.58 -21.66 2.82 -819.39 -2.31 -23.98 16 3 C 0.56 20.11 7.65 86.78 0.66 20.77 16 4 O -0.56 -22.41 14.54 17.01 0.25 -22.16 16 5 C 0.02 0.52 6.65 41.93 0.28 0.79 16 6 N -0.46 -11.52 5.99 -184.62 -1.11 -12.63 16 7 C 0.08 1.18 11.17 84.89 0.95 2.13 16 8 C -0.11 -1.12 10.10 22.41 0.23 -0.89 16 9 C -0.11 -1.49 10.13 22.55 0.23 -1.26 16 10 C 0.11 2.55 6.74 22.94 0.15 2.70 16 11 O -0.49 -11.68 11.60 -68.70 -0.80 -12.48 16 12 C 0.13 5.31 3.58 46.18 0.17 5.48 16 13 H 0.10 4.07 6.99 -2.39 -0.02 4.05 16 14 C -0.14 -5.70 6.53 31.99 0.21 -5.49 16 15 C 0.15 7.58 4.99 86.86 0.43 8.02 16 16 N -0.62 -32.19 2.97 -691.98 -2.06 -34.24 16 17 C -0.24 -13.57 10.27 84.03 0.86 -12.71 16 18 H 0.08 4.22 7.83 -2.92 -0.02 4.19 16 19 C -0.06 -3.35 5.49 84.86 0.47 -2.89 16 20 N -0.94 -55.64 10.09 21.65 0.22 -55.43 16 21 Si 0.98 45.48 29.55 68.60 2.03 47.51 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 C 0.13 5.83 6.30 86.73 0.55 6.37 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 2.56 4.75 -2.39 -0.01 2.54 16 28 H 0.12 3.77 5.13 -6.19 -0.03 3.74 16 29 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 30 H 0.19 0.25 8.06 -2.91 -0.02 0.23 16 31 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 32 H 0.41 6.59 9.06 -74.05 -0.67 5.92 16 33 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.07 4.06 5.87 -2.39 -0.01 4.05 16 36 H 0.01 0.71 5.54 -2.39 -0.01 0.70 16 37 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.02 0.98 8.04 -2.39 -0.02 0.96 16 Total: -1.00 -74.04 314.39 2.78 -71.26 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.40 Total: 15.25 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 6.16 Total: 26.90 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -5.26 Total: -126.27 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.55 Total: -34.64 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -74.04 2.78 -71.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033024237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.417 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds