Wall clock time and date at job start Tue Mar 31 2020 06:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35685 * 117.00257 * 2 1 4 4 C 1.38895 * 119.62295 * 179.97438 * 3 2 1 5 5 C 1.39576 * 118.94157 * 179.97438 * 4 3 2 6 6 C 1.48168 * 120.88908 * 180.02562 * 5 4 3 7 7 O 1.21510 * 119.99693 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00061 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00085 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47171 * 179.97438 * 9 8 6 11 11 H 1.08995 * 112.77967 * 303.72654 * 10 9 8 12 12 C 1.53493 * 113.46747 * 172.93719 * 10 9 8 13 13 C 1.53489 * 83.34840 * 219.15517 * 12 10 9 14 14 N 1.47067 * 87.98695 * 26.06814 * 13 12 10 15 15 C 1.36936 * 136.05926 * 152.61512 * 14 13 12 16 16 H 1.08010 * 119.99868 * 186.93152 * 15 14 13 17 17 C 1.38806 * 120.00265 * 6.93535 * 15 14 13 18 18 N 1.31627 * 119.99875 * 7.49803 * 17 15 14 19 19 Si 1.86799 * 120.00344 * 187.49669 * 17 15 14 20 20 H 1.48503 * 109.46955 * 94.80093 * 19 17 15 21 21 H 1.48502 * 109.47328 * 214.80101 * 19 17 15 22 22 H 1.48498 * 109.47213 * 334.80376 * 19 17 15 23 23 C 1.39963 * 118.22129 * 0.28092 * 5 4 3 24 24 C 1.37978 * 119.13142 * 359.44916 * 23 5 4 25 25 N 1.31912 * 120.97461 * 0.56562 * 24 23 5 26 26 H 1.09001 * 109.47292 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46945 * 299.99960 * 1 2 3 28 28 H 1.09004 * 109.47136 * 59.99685 * 1 2 3 29 29 H 1.08001 * 120.53093 * 0.02562 * 4 3 2 30 30 H 0.97002 * 119.99552 * 0.02562 * 8 6 5 31 31 H 1.08996 * 109.46946 * 59.99893 * 9 8 6 32 32 H 1.09000 * 109.46904 * 300.00108 * 9 8 6 33 33 H 1.08999 * 114.20312 * 105.56877 * 12 10 9 34 34 H 1.08996 * 114.38778 * 332.75947 * 12 10 9 35 35 H 1.09004 * 113.47207 * 271.28975 * 13 12 10 36 36 H 1.09001 * 113.47003 * 140.85073 * 13 12 10 37 37 H 0.96993 * 120.00311 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.43561 * 179.72852 * 23 5 4 39 39 H 1.07996 * 119.51291 * 180.27385 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2724 0.0005 5 6 4.0514 2.5235 0.0000 6 6 5.5283 2.6415 0.0000 7 8 6.2177 1.6409 0.0000 8 7 6.1072 3.8586 -0.0001 9 6 7.5675 3.9753 -0.0007 10 6 7.9610 5.4538 -0.0012 11 1 7.5300 6.0050 -0.8370 12 6 9.4685 5.6852 0.1713 13 6 9.0073 6.8572 1.0486 14 7 7.7638 6.1128 1.2988 15 6 6.8347 6.0544 2.3030 16 1 6.0498 5.3131 2.2701 17 6 6.9014 6.9479 3.3632 18 7 7.7632 7.9423 3.3325 19 14 5.7681 6.7392 4.8334 20 1 6.4691 5.9711 5.8935 21 1 5.3881 8.0750 5.3591 22 1 4.5463 6.0055 4.4163 23 6 3.2395 3.6636 0.0050 24 6 1.8681 3.5116 -0.0014 25 7 1.3179 2.3127 -0.0009 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 4.0231 0.3682 0.0005 30 1 5.5567 4.6574 0.0003 31 1 7.9702 3.4922 -0.8909 32 1 7.9709 3.4919 0.8891 33 1 9.9819 5.9857 -0.7421 34 1 9.9856 4.8955 0.7162 35 1 8.8550 7.7822 0.4924 36 1 9.6166 6.9972 1.9415 37 1 7.8097 8.5669 4.0731 38 1 3.6806 4.6494 0.0091 39 1 1.2358 4.3871 -0.0021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038440501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:24 Heat of formation + Delta-G solvation = 26.301429 kcal Electronic energy + Delta-G solvation = -22761.376655 eV Core-core repulsion = 19285.820866 eV Total energy + Delta-G solvation = -3475.555788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.90093 -39.45076 -38.24851 -37.69383 -34.28536 -32.73293 -32.26062 -30.89869 -28.20721 -27.81817 -27.44375 -24.34060 -23.53518 -23.44421 -21.95837 -20.58030 -19.42604 -18.63158 -17.39264 -16.78654 -16.47492 -16.20022 -15.76198 -15.51259 -15.38806 -14.68034 -14.42927 -14.26180 -13.99968 -13.74431 -13.54531 -13.32604 -12.97737 -12.33133 -11.99197 -11.87836 -11.57566 -11.40383 -11.23637 -11.06848 -10.83330 -10.60148 -10.27442 -10.02691 -10.01403 -9.89804 -9.70420 -9.29811 -8.84566 -8.70749 -8.68541 -6.97225 -5.85402 -3.16714 0.63488 1.00603 2.78918 2.96752 3.33739 3.38333 3.40893 3.41536 3.77049 4.13492 4.37327 4.59032 4.84809 4.91951 4.96650 5.07549 5.10728 5.14143 5.32567 5.39776 5.48160 5.55436 5.63260 5.70872 5.83982 5.95788 6.02009 6.12796 6.25006 6.33695 6.52609 6.62771 6.76520 7.02376 7.14043 7.32519 7.47228 7.62072 7.71843 7.89267 8.34064 8.95542 9.63197 10.56506 11.32845 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.004313 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.421681 B = 6490.820725 C = 7674.013085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.307 6.307 3 C 0.313 3.687 4 C -0.134 4.134 5 C -0.047 4.047 6 C 0.553 3.447 7 O -0.537 6.537 8 N -0.701 5.701 9 C 0.121 3.879 10 C 0.126 3.874 11 H 0.049 0.951 12 C -0.162 4.162 13 C 0.158 3.842 14 N -0.601 5.601 15 C -0.219 4.219 16 H 0.080 0.920 17 C -0.004 4.004 18 N -0.915 5.915 19 Si 0.907 3.093 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C -0.176 4.176 24 C 0.137 3.863 25 N -0.529 5.529 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.154 0.846 30 H 0.405 0.595 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.030 0.970 36 H 0.060 0.940 37 H 0.254 0.746 38 H 0.146 0.854 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.758 -8.954 -9.298 16.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.214 6.214 3 C 0.135 3.865 4 C -0.155 4.155 5 C -0.058 4.058 6 C 0.338 3.662 7 O -0.416 6.416 8 N -0.351 5.351 9 C -0.004 4.004 10 C 0.018 3.982 11 H 0.066 0.934 12 C -0.201 4.201 13 C 0.033 3.967 14 N -0.327 5.327 15 C -0.346 4.346 16 H 0.098 0.902 17 C -0.201 4.201 18 N -0.562 5.562 19 Si 0.737 3.263 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.197 4.197 24 C -0.018 4.018 25 N -0.254 5.254 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.171 0.829 30 H 0.241 0.759 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.164 0.836 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.196 -9.883 -8.969 16.795 hybrid contribution -0.363 0.749 0.904 1.229 sum -10.558 -9.134 -8.065 16.123 Atomic orbital electron populations 1.22861 0.77181 1.02927 1.02488 1.86251 1.22915 1.24266 1.87928 1.19659 0.88998 0.84813 0.93077 1.21108 0.91802 0.99144 1.03462 1.20243 0.94237 0.93221 0.98078 1.18044 0.86552 0.84059 0.77508 1.90755 1.64153 1.36506 1.50136 1.45890 1.09019 1.07504 1.72673 1.21903 0.78233 0.98569 1.01658 1.22421 0.94257 0.90652 0.90895 0.93362 1.23661 0.94924 1.01402 1.00072 1.21909 0.87166 0.91808 0.95847 1.45753 1.26238 1.46533 1.14141 1.18850 1.06200 1.12424 0.97142 0.90199 1.24795 0.99530 0.96641 0.99135 1.69854 1.38503 1.15959 1.31839 0.86192 0.80033 0.76939 0.83132 1.21532 1.21677 1.20573 1.22280 0.94976 0.99419 1.03040 1.22368 0.92600 0.93563 0.93261 1.67172 1.41262 0.98945 1.18012 0.88624 0.92238 0.92286 0.82875 0.75896 0.91859 0.90764 0.92183 0.90165 0.95186 0.92190 0.93605 0.83627 0.81595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.41 16 2 O -0.31 -3.80 10.47 -18.76 -0.20 -4.00 16 3 C 0.31 4.25 7.49 -17.16 -0.13 4.12 16 4 C -0.13 -1.91 9.61 -38.84 -0.37 -2.28 16 5 C -0.05 -0.69 5.91 -104.67 -0.62 -1.31 16 6 C 0.55 9.37 7.80 -12.18 -0.09 9.28 16 7 O -0.54 -10.60 16.44 5.36 0.09 -10.52 16 8 N -0.70 -11.51 5.29 -61.15 -0.32 -11.83 16 9 C 0.12 2.08 5.52 -4.04 -0.02 2.06 16 10 C 0.13 2.30 4.11 -72.39 -0.30 2.00 16 11 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 12 C -0.16 -2.79 8.02 -26.22 -0.21 -3.00 16 13 C 0.16 3.50 7.21 -8.51 -0.06 3.44 16 14 N -0.60 -14.09 3.63 -177.00 -0.64 -14.73 16 15 C -0.22 -5.68 10.53 -15.06 -0.16 -5.84 16 16 H 0.08 1.99 7.61 -52.48 -0.40 1.59 16 17 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 18 N -0.92 -26.32 11.86 55.49 0.66 -25.66 16 19 Si 0.91 21.59 29.56 -169.99 -5.02 16.57 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.18 -2.19 9.61 -39.03 -0.38 -2.56 16 24 C 0.14 1.57 11.17 -17.61 -0.20 1.37 16 25 N -0.53 -6.81 9.18 -13.38 -0.12 -6.93 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.15 2.17 7.74 -52.49 -0.41 1.76 16 30 H 0.41 6.24 6.61 -40.82 -0.27 5.97 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 1.47 7.63 -51.93 -0.40 1.08 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.15 1.60 6.53 -52.49 -0.34 1.26 16 39 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -32.08 336.28 -7.25 -39.34 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.17 Total: 4.21 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -1.58 Total: 8.49 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.43 Total: -59.16 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.11 Total: -14.51 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.08 -7.25 -39.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038440501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.637 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds