Wall clock time and date at job start Tue Mar 31 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35685 * 117.00257 * 2 1 4 4 C 1.38895 * 119.62295 * 179.97438 * 3 2 1 5 5 C 1.39576 * 118.94157 * 179.97438 * 4 3 2 6 6 C 1.48168 * 120.88908 * 180.02562 * 5 4 3 7 7 O 1.21510 * 119.99693 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00061 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00085 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47171 * 179.97438 * 9 8 6 11 11 H 1.08995 * 112.77967 * 303.72654 * 10 9 8 12 12 C 1.53493 * 113.46747 * 172.93719 * 10 9 8 13 13 C 1.53489 * 83.34840 * 219.15517 * 12 10 9 14 14 N 1.47067 * 87.98695 * 26.06814 * 13 12 10 15 15 C 1.36936 * 136.05926 * 152.61512 * 14 13 12 16 16 H 1.08010 * 119.99868 * 186.93152 * 15 14 13 17 17 C 1.38806 * 120.00265 * 6.93535 * 15 14 13 18 18 N 1.31627 * 119.99875 * 7.49803 * 17 15 14 19 19 Si 1.86799 * 120.00344 * 187.49669 * 17 15 14 20 20 H 1.48503 * 109.46955 * 94.80093 * 19 17 15 21 21 H 1.48502 * 109.47328 * 214.80101 * 19 17 15 22 22 H 1.48498 * 109.47213 * 334.80376 * 19 17 15 23 23 C 1.39963 * 118.22129 * 0.28092 * 5 4 3 24 24 C 1.37978 * 119.13142 * 359.44916 * 23 5 4 25 25 N 1.31912 * 120.97461 * 0.56562 * 24 23 5 26 26 H 1.09001 * 109.47292 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46945 * 299.99960 * 1 2 3 28 28 H 1.09004 * 109.47136 * 59.99685 * 1 2 3 29 29 H 1.08001 * 120.53093 * 0.02562 * 4 3 2 30 30 H 0.97002 * 119.99552 * 0.02562 * 8 6 5 31 31 H 1.08996 * 109.46946 * 59.99893 * 9 8 6 32 32 H 1.09000 * 109.46904 * 300.00108 * 9 8 6 33 33 H 1.08999 * 114.20312 * 105.56877 * 12 10 9 34 34 H 1.08996 * 114.38778 * 332.75947 * 12 10 9 35 35 H 1.09004 * 113.47207 * 271.28975 * 13 12 10 36 36 H 1.09001 * 113.47003 * 140.85073 * 13 12 10 37 37 H 0.96993 * 120.00311 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.43561 * 179.72852 * 23 5 4 39 39 H 1.07996 * 119.51291 * 180.27385 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2724 0.0005 5 6 4.0514 2.5235 0.0000 6 6 5.5283 2.6415 0.0000 7 8 6.2177 1.6409 0.0000 8 7 6.1072 3.8586 -0.0001 9 6 7.5675 3.9753 -0.0007 10 6 7.9610 5.4538 -0.0012 11 1 7.5300 6.0050 -0.8370 12 6 9.4685 5.6852 0.1713 13 6 9.0073 6.8572 1.0486 14 7 7.7638 6.1128 1.2988 15 6 6.8347 6.0544 2.3030 16 1 6.0498 5.3131 2.2701 17 6 6.9014 6.9479 3.3632 18 7 7.7632 7.9423 3.3325 19 14 5.7681 6.7392 4.8334 20 1 6.4691 5.9711 5.8935 21 1 5.3881 8.0750 5.3591 22 1 4.5463 6.0055 4.4163 23 6 3.2395 3.6636 0.0050 24 6 1.8681 3.5116 -0.0014 25 7 1.3179 2.3127 -0.0009 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 4.0231 0.3682 0.0005 30 1 5.5567 4.6574 0.0003 31 1 7.9702 3.4922 -0.8909 32 1 7.9709 3.4919 0.8891 33 1 9.9819 5.9857 -0.7421 34 1 9.9856 4.8955 0.7162 35 1 8.8550 7.7822 0.4924 36 1 9.6166 6.9972 1.9415 37 1 7.8097 8.5669 4.0731 38 1 3.6806 4.6494 0.0091 39 1 1.2358 4.3871 -0.0021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038440501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:23 Heat of formation + Delta-G solvation = 2.663342 kcal Electronic energy + Delta-G solvation = -22762.401679 eV Core-core repulsion = 19285.820866 eV Total energy + Delta-G solvation = -3476.580813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.94003 -40.74378 -39.75141 -38.73077 -35.70105 -34.27237 -33.75039 -31.86970 -29.96874 -29.31738 -28.25644 -25.52336 -25.37935 -24.43001 -23.41334 -21.82596 -21.02206 -19.86773 -18.54750 -18.31878 -17.63771 -17.17797 -17.04645 -16.92841 -16.69786 -16.23672 -15.77803 -15.52644 -15.21978 -14.99091 -14.88442 -14.62649 -14.34939 -13.62409 -13.32702 -13.21637 -13.02479 -12.72192 -12.69087 -12.60390 -12.26895 -12.22546 -11.88888 -11.64775 -11.49193 -11.10938 -11.04233 -10.81803 -10.73089 -10.09936 -9.65157 -8.88652 -7.88878 -5.18458 -0.45492 0.03170 1.44137 1.47207 1.53681 1.72828 1.80908 2.23329 2.47700 2.71350 3.23072 3.35443 3.39361 3.53410 3.84423 3.91015 3.93805 3.99613 4.18193 4.35945 4.42511 4.43919 4.58727 4.63563 4.68919 4.72850 4.76126 4.88664 4.95336 5.07928 5.11168 5.20190 5.32153 5.37498 5.57284 5.74965 5.95504 6.11819 6.40817 6.65809 6.94139 7.03242 7.65019 8.65317 9.30222 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.004313 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.421681 B = 6490.820725 C = 7674.013085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.319 6.319 3 C 0.308 3.692 4 C -0.148 4.148 5 C -0.060 4.060 6 C 0.554 3.446 7 O -0.572 6.572 8 N -0.697 5.697 9 C 0.128 3.872 10 C 0.133 3.867 11 H 0.071 0.929 12 C -0.134 4.134 13 C 0.150 3.850 14 N -0.628 5.628 15 C -0.207 4.207 16 H 0.088 0.912 17 C -0.066 4.066 18 N -0.952 5.952 19 Si 0.962 3.038 20 H -0.298 1.298 21 H -0.296 1.296 22 H -0.264 1.264 23 C -0.173 4.173 24 C 0.144 3.856 25 N -0.532 5.532 26 H 0.123 0.877 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.145 0.855 30 H 0.411 0.589 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.245 0.755 38 H 0.161 0.839 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.332 -9.387 -10.633 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.226 6.226 3 C 0.130 3.870 4 C -0.170 4.170 5 C -0.071 4.071 6 C 0.340 3.660 7 O -0.452 6.452 8 N -0.347 5.347 9 C 0.003 3.997 10 C 0.027 3.973 11 H 0.088 0.912 12 C -0.173 4.173 13 C 0.024 3.976 14 N -0.354 5.354 15 C -0.336 4.336 16 H 0.106 0.894 17 C -0.259 4.259 18 N -0.602 5.602 19 Si 0.792 3.208 20 H -0.226 1.226 21 H -0.223 1.223 22 H -0.188 1.188 23 C -0.194 4.194 24 C -0.011 4.011 25 N -0.256 5.256 26 H 0.141 0.859 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.163 0.837 30 H 0.248 0.752 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.179 0.821 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.795 -10.343 -10.341 18.790 hybrid contribution 0.094 0.841 1.242 1.503 sum -11.701 -9.502 -9.099 17.607 Atomic orbital electron populations 1.23127 0.75294 1.04879 1.02591 1.86240 1.24816 1.23880 1.87687 1.19717 0.88837 0.85483 0.92982 1.21092 0.92412 0.98905 1.04567 1.20105 0.92951 0.94272 0.99759 1.18365 0.87520 0.83536 0.76530 1.90732 1.65191 1.37527 1.51760 1.45840 1.08768 1.07714 1.72387 1.21736 0.78834 0.97598 1.01484 1.22564 0.94988 0.90803 0.88993 0.91177 1.23489 0.94680 0.98693 1.00448 1.21931 0.86868 0.93423 0.95385 1.46070 1.26195 1.47222 1.15942 1.19201 1.05750 1.11188 0.97428 0.89443 1.25486 1.01472 0.97185 1.01745 1.70013 1.40715 1.17172 1.32252 0.85295 0.79012 0.76362 0.80153 1.22575 1.22328 1.18803 1.22472 0.95332 0.99233 1.02340 1.22993 0.92644 0.94172 0.91297 1.67286 1.41202 0.99210 1.17938 0.85874 0.92292 0.91922 0.83728 0.75199 0.89650 0.93356 0.88126 0.89975 0.95785 0.95779 0.94563 0.82127 0.77934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.38 113.37 1.18 1.73 16 2 O -0.32 -7.55 10.47 -90.04 -0.94 -8.49 16 3 C 0.31 8.01 7.49 84.80 0.63 8.64 16 4 C -0.15 -4.17 9.61 22.75 0.22 -3.95 16 5 C -0.06 -1.69 5.91 -19.90 -0.12 -1.81 16 6 C 0.55 18.30 7.80 86.88 0.68 18.98 16 7 O -0.57 -22.51 16.44 -3.75 -0.06 -22.57 16 8 N -0.70 -21.72 5.29 -465.67 -2.46 -24.19 16 9 C 0.13 4.17 5.52 86.38 0.48 4.65 16 10 C 0.13 4.55 4.11 41.79 0.17 4.72 16 11 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 12 C -0.13 -4.32 8.02 30.92 0.25 -4.07 16 13 C 0.15 6.57 7.21 83.18 0.60 7.17 16 14 N -0.63 -28.98 3.63 -713.89 -2.59 -31.57 16 15 C -0.21 -10.65 10.53 84.03 0.89 -9.76 16 16 H 0.09 4.25 7.61 -2.91 -0.02 4.23 16 17 C -0.07 -3.60 5.49 84.86 0.47 -3.13 16 18 N -0.95 -56.01 11.86 21.65 0.26 -55.76 16 19 Si 0.96 44.63 29.56 68.60 2.03 46.66 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 21 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 C -0.17 -3.88 9.61 22.63 0.22 -3.66 16 24 C 0.14 2.86 11.17 84.62 0.94 3.80 16 25 N -0.53 -12.48 9.18 -309.14 -2.84 -15.32 16 26 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 28 H 0.06 0.93 8.10 -2.38 -0.02 0.91 16 29 H 0.14 4.21 7.74 -2.91 -0.02 4.18 16 30 H 0.41 11.76 6.61 -92.71 -0.61 11.15 16 31 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.08 2.64 8.12 -2.39 -0.02 2.62 16 35 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.02 1.21 7.63 -2.39 -0.02 1.19 16 37 H 0.25 14.22 8.31 -92.71 -0.77 13.44 16 38 H 0.16 3.05 6.53 -2.91 -0.02 3.03 16 39 H 0.20 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -70.38 336.28 0.44 -69.94 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.46 Total: 18.00 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 6.60 Total: 23.30 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -7.64 Total: -126.83 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.00 Total: -31.07 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -70.38 0.44 -69.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038440501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.606 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds