Wall clock time and date at job start Tue Mar 31 2020 07:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47269 * 269.99736 * 3 2 1 5 5 H 1.48500 * 109.47263 * 30.00086 * 3 2 1 6 6 H 1.48500 * 109.46711 * 149.99652 * 3 2 1 7 7 C 1.38808 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00070 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.47121 * 125.76389 * 359.97438 * 9 7 2 11 11 C 1.54566 * 107.25258 * 182.61883 * 10 9 7 12 12 C 1.54423 * 102.44671 * 21.66917 * 11 10 9 13 13 H 1.08997 * 110.72430 * 80.56910 * 12 11 10 14 14 C 1.48209 * 125.76989 * 179.97438 * 9 7 2 15 15 H 1.09003 * 112.30407 * 33.42808 * 14 9 7 16 16 C 1.53014 * 107.11113 * 270.83558 * 14 9 7 17 17 C 1.52740 * 110.79905 * 191.92236 * 16 14 9 18 18 C 1.53037 * 108.51986 * 63.65621 * 17 16 14 19 19 N 1.45123 * 111.60530 * 203.42427 * 12 11 10 20 20 C 1.34779 * 119.57681 * 248.62847 * 19 12 11 21 21 O 1.21614 * 119.99981 * 186.44452 * 20 19 12 22 22 C 1.47227 * 119.99766 * 6.44658 * 20 19 12 23 23 C 1.37007 * 127.18627 * 202.09669 * 22 20 19 24 24 N 1.33322 * 106.37117 * 180.02562 * 23 22 20 25 25 N 1.28517 * 109.43937 * 0.02562 * 24 23 22 26 26 N 1.28710 * 110.64019 * 359.97438 * 25 24 23 27 27 H 0.96994 * 126.03957 * 180.26877 * 26 25 24 28 28 H 0.96996 * 119.99955 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.88249 * 302.02588 * 10 9 7 30 30 H 1.08999 * 109.88752 * 63.05079 * 10 9 7 31 31 H 1.08995 * 110.81358 * 263.42861 * 11 10 9 32 32 H 1.08995 * 110.81133 * 139.90379 * 11 10 9 33 33 H 1.08996 * 109.21303 * 312.26580 * 16 14 9 34 34 H 1.09005 * 109.21206 * 71.63027 * 16 14 9 35 35 H 1.08997 * 109.64047 * 183.45606 * 17 16 14 36 36 H 1.08998 * 109.64191 * 303.87716 * 17 16 14 37 37 H 1.09004 * 109.76755 * 182.52411 * 18 17 16 38 38 H 1.09003 * 109.68243 * 61.70722 * 18 17 16 39 39 H 1.07997 * 126.81915 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1382 -2.5359 0.0005 11 6 -0.4462 -4.0490 0.0680 12 6 0.8582 -4.6282 0.6577 13 1 0.8811 -4.5029 1.7402 14 6 1.9339 -3.7396 0.0005 15 1 2.8711 -3.7714 0.5561 16 6 2.1381 -4.1414 -1.4617 17 6 2.4841 -5.6249 -1.5733 18 6 1.2932 -6.4413 -1.0660 19 7 1.0225 -6.0294 0.3175 20 6 0.9306 -6.9640 1.2843 21 8 1.1821 -8.1267 1.0319 22 6 0.5257 -6.5771 2.6459 23 6 0.7723 -7.2590 3.8083 24 7 0.2232 -6.5414 4.7887 25 7 -0.3274 -5.4912 4.2932 26 7 -0.1774 -5.4603 3.0152 27 1 -0.5012 -4.7669 2.4193 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5616 -2.0323 0.8696 30 1 -0.5538 -2.1110 -0.9131 31 1 -0.6330 -4.4510 -0.9278 32 1 -1.2901 -4.2434 0.7298 33 1 1.2226 -3.9436 -2.0193 34 1 2.9507 -3.5514 -1.8857 35 1 2.6854 -5.8768 -2.6145 36 1 3.3633 -5.8427 -0.9671 37 1 1.5354 -7.5037 -1.0948 38 1 0.4205 -6.2431 -1.6883 39 1 1.3056 -8.1925 3.9104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049570638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:12 Heat of formation + Delta-G solvation = 109.796951 kcal Electronic energy + Delta-G solvation = -24464.546271 eV Core-core repulsion = 21024.903871 eV Total energy + Delta-G solvation = -3439.642400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.50141 -40.51699 -38.39486 -35.28173 -34.17214 -32.68304 -32.30637 -31.29881 -29.33587 -28.50923 -25.65633 -24.68085 -23.57359 -23.16450 -22.04945 -21.20420 -20.28185 -19.48726 -17.82904 -17.24759 -17.02173 -16.26883 -16.19643 -15.00712 -14.94678 -14.76821 -14.38328 -14.17012 -13.90805 -13.55332 -13.15677 -12.89488 -12.41414 -12.23519 -12.19244 -11.69381 -11.35633 -11.24705 -11.18824 -10.99883 -10.85672 -10.79837 -10.67315 -10.45073 -10.24253 -10.16101 -9.91568 -9.83221 -9.59433 -8.83389 -8.64038 -7.09791 -5.90649 -3.25962 0.84822 2.21379 2.38140 2.70288 2.98255 3.29808 3.35844 3.37280 4.05375 4.32950 4.47004 4.66171 4.82999 4.88428 5.02556 5.08930 5.12003 5.19587 5.31421 5.32488 5.42480 5.59182 5.74019 5.84844 5.87832 5.89132 5.93921 6.07502 6.13962 6.22811 6.43304 6.54254 6.58026 6.80016 7.16689 7.27198 7.31087 7.59796 7.83286 8.01339 8.21095 9.00118 9.59428 10.21924 11.20882 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017980 B = 0.005655 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.952773 B = 4950.024439 C = 5945.900087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.003 4.003 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.596 5.596 10 C 0.177 3.823 11 C -0.162 4.162 12 C 0.100 3.900 13 H 0.088 0.912 14 C 0.161 3.839 15 H 0.064 0.936 16 C -0.131 4.131 17 C -0.134 4.134 18 C 0.114 3.886 19 N -0.586 5.586 20 C 0.593 3.407 21 O -0.524 6.524 22 C -0.064 4.064 23 C 0.026 3.974 24 N -0.274 5.274 25 N -0.048 5.048 26 N -0.372 5.372 27 H 0.457 0.543 28 H 0.255 0.745 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 -11.834 -0.839 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.200 4.200 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.052 3.948 11 C -0.202 4.202 12 C -0.006 4.006 13 H 0.106 0.894 14 C 0.052 3.948 15 H 0.082 0.918 16 C -0.171 4.171 17 C -0.173 4.173 18 C -0.007 4.007 19 N -0.317 5.317 20 C 0.379 3.621 21 O -0.399 6.399 22 C -0.198 4.198 23 C -0.133 4.133 24 N -0.138 5.138 25 N -0.030 5.030 26 N -0.105 5.105 27 H 0.311 0.689 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.051 -11.542 0.312 11.547 hybrid contribution 0.598 1.008 -1.365 1.800 sum 0.650 -10.534 -1.053 10.606 Atomic orbital electron populations 1.69905 1.04920 1.25453 1.56527 1.24795 0.95740 0.97757 1.01669 0.86101 0.78658 0.83232 0.77656 1.21478 1.21555 1.20602 1.19024 0.90502 0.81931 1.44591 0.90237 1.44688 1.01158 0.99226 1.87039 1.21254 0.84676 0.86775 1.02088 1.23337 0.94829 1.00864 1.01147 1.22369 0.98993 0.79534 0.99688 0.89428 1.21288 0.94015 0.85717 0.93747 0.91757 1.22136 1.02335 0.93474 0.99161 1.21868 0.97584 0.96663 1.01165 1.21723 0.98456 1.00458 0.80091 1.47595 1.69341 1.06246 1.08515 1.16885 0.77890 0.85430 0.81937 1.90819 1.50437 1.17733 1.80898 1.22353 1.07485 0.92137 0.97850 1.23859 1.01355 1.01563 0.86571 1.74975 1.11226 1.00641 1.27003 1.78233 1.17646 1.16487 0.90591 1.46580 1.37084 1.18544 1.08324 0.68901 0.93486 0.92682 0.93243 0.90537 0.92406 0.91636 0.91667 0.90858 0.91627 0.88640 0.90963 0.78059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.93 10.33 55.49 0.57 -24.36 16 2 C 0.00 -0.07 5.49 -17.43 -0.10 -0.17 16 3 Si 0.91 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.23 -5.87 10.29 -15.06 -0.16 -6.02 16 8 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.60 -13.14 2.91 -162.18 -0.47 -13.61 16 10 C 0.18 3.66 5.19 -2.88 -0.01 3.65 16 11 C -0.16 -2.46 5.74 -25.16 -0.14 -2.61 16 12 C 0.10 1.49 2.34 -67.28 -0.16 1.33 16 13 H 0.09 1.34 4.37 -51.93 -0.23 1.11 16 14 C 0.16 2.83 3.60 -66.34 -0.24 2.59 16 15 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 16 C -0.13 -2.03 5.10 -26.86 -0.14 -2.16 16 17 C -0.13 -1.62 6.09 -26.85 -0.16 -1.79 16 18 C 0.11 1.37 6.15 -3.82 -0.02 1.35 16 19 N -0.59 -7.91 2.74 -166.54 -0.46 -8.36 16 20 C 0.59 8.46 7.61 -12.61 -0.10 8.37 16 21 O -0.52 -8.35 16.32 5.27 0.09 -8.26 16 22 C -0.06 -0.88 6.43 -82.33 -0.53 -1.41 16 23 C 0.03 0.35 11.93 -17.35 -0.21 0.14 16 24 N -0.27 -4.12 12.35 30.47 0.38 -3.74 16 25 N -0.05 -0.73 13.35 60.35 0.81 0.08 16 26 N -0.37 -5.15 5.75 33.31 0.19 -4.96 16 27 H 0.46 5.95 4.95 -190.34 -0.94 5.00 16 28 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.06 1.27 7.30 -51.93 -0.38 0.90 16 30 H 0.05 1.16 7.59 -51.93 -0.39 0.76 16 31 H 0.08 1.10 6.82 -51.93 -0.35 0.75 16 32 H 0.06 0.75 7.00 -51.93 -0.36 0.39 16 33 H 0.06 1.07 7.12 -51.93 -0.37 0.71 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.13 6.93 -51.93 -0.36 0.77 16 38 H 0.07 0.81 7.54 -51.93 -0.39 0.41 16 39 H 0.20 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -28.64 306.98 -6.70 -35.34 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.44 Total: 4.13 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.96 Total: 3.27 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 1.02 Total: -54.96 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.64 -6.70 -35.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049570638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.137 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds