Wall clock time and date at job start Tue Mar 31 2020 07:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47269 * 269.99736 * 3 2 1 5 5 H 1.48500 * 109.47263 * 30.00086 * 3 2 1 6 6 H 1.48500 * 109.46711 * 149.99652 * 3 2 1 7 7 C 1.38808 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00070 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.47121 * 125.76389 * 359.97438 * 9 7 2 11 11 C 1.54566 * 107.25258 * 182.61883 * 10 9 7 12 12 C 1.54423 * 102.44671 * 21.66917 * 11 10 9 13 13 H 1.08997 * 110.72430 * 80.56910 * 12 11 10 14 14 C 1.48209 * 125.76989 * 179.97438 * 9 7 2 15 15 H 1.09003 * 112.30407 * 33.42808 * 14 9 7 16 16 C 1.53014 * 107.11113 * 270.83558 * 14 9 7 17 17 C 1.52740 * 110.79905 * 191.92236 * 16 14 9 18 18 C 1.53037 * 108.51986 * 63.65621 * 17 16 14 19 19 N 1.45123 * 111.60530 * 203.42427 * 12 11 10 20 20 C 1.34779 * 119.57681 * 248.62847 * 19 12 11 21 21 O 1.21614 * 119.99981 * 186.44452 * 20 19 12 22 22 C 1.47227 * 119.99766 * 6.44658 * 20 19 12 23 23 C 1.37007 * 127.18627 * 202.09669 * 22 20 19 24 24 N 1.33322 * 106.37117 * 180.02562 * 23 22 20 25 25 N 1.28517 * 109.43937 * 0.02562 * 24 23 22 26 26 N 1.28710 * 110.64019 * 359.97438 * 25 24 23 27 27 H 0.96994 * 126.03957 * 180.26877 * 26 25 24 28 28 H 0.96996 * 119.99955 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.88249 * 302.02588 * 10 9 7 30 30 H 1.08999 * 109.88752 * 63.05079 * 10 9 7 31 31 H 1.08995 * 110.81358 * 263.42861 * 11 10 9 32 32 H 1.08995 * 110.81133 * 139.90379 * 11 10 9 33 33 H 1.08996 * 109.21303 * 312.26580 * 16 14 9 34 34 H 1.09005 * 109.21206 * 71.63027 * 16 14 9 35 35 H 1.08997 * 109.64047 * 183.45606 * 17 16 14 36 36 H 1.08998 * 109.64191 * 303.87716 * 17 16 14 37 37 H 1.09004 * 109.76755 * 182.52411 * 18 17 16 38 38 H 1.09003 * 109.68243 * 61.70722 * 18 17 16 39 39 H 1.07997 * 126.81915 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1382 -2.5359 0.0005 11 6 -0.4462 -4.0490 0.0680 12 6 0.8582 -4.6282 0.6577 13 1 0.8811 -4.5029 1.7402 14 6 1.9339 -3.7396 0.0005 15 1 2.8711 -3.7714 0.5561 16 6 2.1381 -4.1414 -1.4617 17 6 2.4841 -5.6249 -1.5733 18 6 1.2932 -6.4413 -1.0660 19 7 1.0225 -6.0294 0.3175 20 6 0.9306 -6.9640 1.2843 21 8 1.1821 -8.1267 1.0319 22 6 0.5257 -6.5771 2.6459 23 6 0.7723 -7.2590 3.8083 24 7 0.2232 -6.5414 4.7887 25 7 -0.3274 -5.4912 4.2932 26 7 -0.1774 -5.4603 3.0152 27 1 -0.5012 -4.7669 2.4193 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5616 -2.0323 0.8696 30 1 -0.5538 -2.1110 -0.9131 31 1 -0.6330 -4.4510 -0.9278 32 1 -1.2901 -4.2434 0.7298 33 1 1.2226 -3.9436 -2.0193 34 1 2.9507 -3.5514 -1.8857 35 1 2.6854 -5.8768 -2.6145 36 1 3.3633 -5.8427 -0.9671 37 1 1.5354 -7.5037 -1.0948 38 1 0.4205 -6.2431 -1.6883 39 1 1.3056 -8.1925 3.9104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049570638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:12 Heat of formation + Delta-G solvation = 91.147801 kcal Electronic energy + Delta-G solvation = -24465.354959 eV Core-core repulsion = 21024.903871 eV Total energy + Delta-G solvation = -3440.451088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.60983 -41.73296 -39.69912 -36.70402 -35.29869 -34.06459 -33.82305 -32.42458 -30.92167 -29.90377 -26.94038 -26.33894 -24.73498 -24.34453 -23.21316 -22.42855 -21.87616 -20.64432 -19.23573 -18.54820 -18.35534 -17.41405 -17.37781 -16.79548 -16.25086 -16.00931 -15.68362 -15.37814 -15.15622 -14.94654 -14.39309 -14.30884 -13.90334 -13.59176 -13.32950 -13.19359 -12.87104 -12.68744 -12.47075 -12.43683 -12.38659 -12.11605 -12.04990 -11.87981 -11.69486 -11.55900 -11.46087 -11.18497 -10.72832 -10.70347 -9.83399 -8.92829 -7.87396 -5.22000 -0.25290 1.10802 1.29555 1.46108 1.47310 1.54695 1.58653 1.87381 2.46836 2.92840 3.28965 3.36816 3.49092 3.50368 3.67410 3.79520 3.87276 4.03706 4.06605 4.12358 4.29761 4.41743 4.47038 4.58408 4.64343 4.74006 4.90115 4.90764 5.00914 5.06198 5.28899 5.32276 5.41505 5.46556 5.52801 5.58291 5.73093 6.01170 6.17056 6.71070 7.07914 7.10195 7.72523 8.34992 9.22223 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017980 B = 0.005655 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.952773 B = 4950.024439 C = 5945.900087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.057 4.057 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.614 5.614 10 C 0.186 3.814 11 C -0.145 4.145 12 C 0.118 3.882 13 H 0.086 0.914 14 C 0.153 3.847 15 H 0.057 0.943 16 C -0.122 4.122 17 C -0.122 4.122 18 C 0.111 3.889 19 N -0.581 5.581 20 C 0.601 3.399 21 O -0.536 6.536 22 C -0.070 4.070 23 C 0.033 3.967 24 N -0.290 5.290 25 N -0.067 5.067 26 N -0.366 5.366 27 H 0.459 0.541 28 H 0.247 0.753 29 H 0.023 0.977 30 H 0.015 0.985 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 -13.843 -1.288 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.197 1.197 7 C -0.364 4.364 8 H 0.098 0.902 9 N -0.339 5.339 10 C 0.060 3.940 11 C -0.184 4.184 12 C 0.011 3.989 13 H 0.104 0.896 14 C 0.046 3.954 15 H 0.075 0.925 16 C -0.162 4.162 17 C -0.161 4.161 18 C -0.009 4.009 19 N -0.311 5.311 20 C 0.387 3.613 21 O -0.412 6.412 22 C -0.205 4.205 23 C -0.126 4.126 24 N -0.154 5.154 25 N -0.048 5.048 26 N -0.100 5.100 27 H 0.313 0.687 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.033 0.967 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.704 -13.587 -0.141 13.606 hybrid contribution 0.460 1.585 -1.235 2.062 sum 1.164 -12.002 -1.377 12.137 Atomic orbital electron populations 1.70096 1.05963 1.25283 1.58216 1.25474 0.96486 1.00466 1.02679 0.85218 0.77726 0.79882 0.77347 1.21462 1.22372 1.19745 1.19319 0.90850 0.83368 1.42815 0.90220 1.44877 1.01987 1.00196 1.86888 1.20961 0.83866 0.90213 0.98929 1.23171 0.95860 0.96558 1.02846 1.22012 0.97527 0.80059 0.99254 0.89611 1.21487 0.94274 0.84226 0.95393 0.92516 1.21952 1.01398 0.95913 0.96914 1.21793 0.97617 0.93702 1.02951 1.21917 0.98976 1.00873 0.79137 1.47549 1.69138 1.05215 1.09244 1.16805 0.77489 0.85164 0.81887 1.90822 1.51136 1.18154 1.81078 1.22430 1.07777 0.92222 0.98022 1.24367 1.00459 1.02019 0.85789 1.74969 1.11770 1.00922 1.27730 1.78227 1.18436 1.17020 0.91141 1.46550 1.36813 1.18579 1.08028 0.68692 0.94354 0.95866 0.96654 0.88972 0.89795 0.92504 0.93136 0.88200 0.91616 0.87652 0.89442 0.75321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.97 10.33 21.65 0.22 -52.75 16 2 C -0.06 -3.06 5.49 84.86 0.47 -2.59 16 3 Si 0.97 43.65 29.55 68.60 2.03 45.68 16 4 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.23 -12.01 10.29 84.03 0.86 -11.14 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 9 N -0.61 -27.38 2.91 -667.01 -1.94 -29.32 16 10 C 0.19 7.82 5.19 86.79 0.45 8.27 16 11 C -0.15 -4.19 5.74 31.61 0.18 -4.00 16 12 C 0.12 3.31 2.34 46.15 0.11 3.42 16 13 H 0.09 2.49 4.37 -2.39 -0.01 2.48 16 14 C 0.15 5.26 3.60 45.08 0.16 5.42 16 15 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 16 C -0.12 -3.59 5.10 30.51 0.16 -3.43 16 17 C -0.12 -2.57 6.09 30.52 0.19 -2.39 16 18 C 0.11 2.27 6.15 86.32 0.53 2.81 16 19 N -0.58 -14.01 2.74 -799.07 -2.19 -16.20 16 20 C 0.60 15.39 7.61 86.61 0.66 16.05 16 21 O -0.54 -15.35 16.32 -4.08 -0.07 -15.42 16 22 C -0.07 -1.77 6.43 40.40 0.26 -1.51 16 23 C 0.03 0.80 11.93 84.18 1.00 1.81 16 24 N -0.29 -8.28 12.35 -57.50 -0.71 -8.99 16 25 N -0.07 -1.97 13.35 37.02 0.49 -1.48 16 26 N -0.37 -9.58 5.75 -48.52 -0.28 -9.85 16 27 H 0.46 11.29 4.95 -219.91 -1.09 10.20 16 28 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 29 H 0.02 1.11 7.30 -2.39 -0.02 1.09 16 30 H 0.02 0.74 7.59 -2.39 -0.02 0.72 16 31 H 0.09 2.42 6.82 -2.39 -0.02 2.40 16 32 H 0.08 2.01 7.00 -2.39 -0.02 2.00 16 33 H 0.06 1.78 7.12 -2.39 -0.02 1.76 16 34 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.11 2.06 6.93 -2.38 -0.02 2.05 16 38 H 0.09 1.58 7.54 -2.39 -0.02 1.57 16 39 H 0.23 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -62.61 306.98 2.59 -60.02 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.01 Total: 15.61 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 5.03 Total: 12.70 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -4.40 Total: -118.59 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.07 Total: -15.42 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -62.61 2.59 -60.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049570638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.165 kcal (2) G-P(sol) polarization free energy of solvation -62.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds