Wall clock time and date at job start Tue Mar 31 2020 06:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00537 * 2 1 4 4 C 1.52999 * 109.46870 * 95.25331 * 3 2 1 5 5 H 1.09004 * 112.96155 * 67.37816 * 4 3 2 6 6 C 1.53939 * 113.77231 * 295.69349 * 4 3 2 7 7 C 1.53949 * 86.29219 * 222.09114 * 6 4 3 8 8 N 1.47585 * 113.76841 * 199.04635 * 4 3 2 9 9 C 1.36926 * 134.49311 * 318.93692 * 8 4 3 10 10 H 1.07997 * 120.00558 * 5.37376 * 9 8 4 11 11 C 1.38814 * 119.99877 * 185.36771 * 9 8 4 12 12 N 1.31616 * 120.00145 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00222 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46765 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47233 * 120.00155 * 13 11 9 16 16 H 1.48497 * 109.47596 * 240.00485 * 13 11 9 17 17 C 1.34784 * 119.99728 * 180.02562 * 2 1 3 18 18 O 1.21512 * 119.99797 * 183.17267 * 17 2 1 19 19 C 1.48158 * 119.99656 * 3.17850 * 17 2 1 20 20 C 1.39169 * 119.68451 * 172.79057 * 19 17 2 21 21 C 1.38748 * 119.18239 * 179.97438 * 20 19 17 22 22 C 1.38376 * 118.55656 * 0.02562 * 21 20 19 23 23 C 1.39242 * 119.31093 * 0.02562 * 22 21 20 24 24 O 1.35666 * 119.62044 * 180.02562 * 23 22 21 25 25 N 1.31930 * 120.76540 * 359.74139 * 23 22 21 26 26 H 1.08997 * 109.46999 * 263.86905 * 1 2 3 27 27 H 1.08994 * 109.47619 * 143.86100 * 1 2 3 28 28 H 1.09004 * 109.46862 * 23.85804 * 1 2 3 29 29 H 1.09000 * 109.47405 * 215.25741 * 3 2 1 30 30 H 1.08997 * 109.46715 * 335.25707 * 3 2 1 31 31 H 1.08999 * 113.73892 * 336.43974 * 6 4 3 32 32 H 1.09005 * 113.74187 * 107.63776 * 6 4 3 33 33 H 1.08996 * 113.76862 * 137.90287 * 7 6 4 34 34 H 1.08995 * 113.76868 * 269.19720 * 7 6 4 35 35 H 0.97003 * 120.00250 * 179.97438 * 12 11 9 36 36 H 1.07991 * 120.41151 * 359.97438 * 20 19 17 37 37 H 1.07993 * 120.72197 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.34307 * 180.02562 * 22 21 20 39 39 H 0.96696 * 114.00517 * 89.99319 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5670 1.6442 1.4364 5 1 3.2967 0.9661 1.8790 6 6 1.3502 1.9207 2.3380 7 6 2.1546 3.1125 2.8881 8 7 2.8987 3.0716 1.6115 9 6 3.6092 3.9880 0.8833 10 1 3.9978 3.7214 -0.0884 11 6 3.8299 5.2597 1.3940 12 7 3.3567 5.5845 2.5785 13 14 4.7999 6.5098 0.4010 14 1 5.2190 5.9009 -0.8870 15 1 3.9490 7.6969 0.1331 16 1 6.0022 6.9253 1.1670 17 6 2.1388 -1.1673 -0.0005 18 8 3.3525 -1.1681 0.0577 19 6 1.3996 -2.4493 -0.0722 20 6 2.1010 -3.6417 -0.2241 21 6 1.3982 -4.8363 -0.2895 22 6 0.0178 -4.7973 -0.2014 23 6 -0.6213 -3.5694 -0.0512 24 8 -1.9743 -3.5240 0.0364 25 7 0.0741 -2.4500 0.0125 26 1 -0.3633 -0.1098 1.0218 27 1 -0.3634 -0.8299 -0.6060 28 1 -0.3633 0.9399 -0.4157 29 1 3.1060 1.1637 -0.5932 30 1 1.5710 2.0500 -0.4301 31 1 0.4545 2.2116 1.7892 32 1 1.1625 1.1387 3.0738 33 1 1.5621 4.0173 3.0236 34 1 2.7625 2.8677 3.7590 35 1 3.5113 6.4731 2.9355 36 1 3.1788 -3.6373 -0.2902 37 1 1.9172 -5.7759 -0.4076 38 1 -0.5578 -5.7099 -0.2486 39 1 -2.3125 -3.5901 0.9399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085533384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:11 Heat of formation + Delta-G solvation = 45.487954 kcal Electronic energy + Delta-G solvation = -23105.047592 eV Core-core repulsion = 19630.323794 eV Total energy + Delta-G solvation = -3474.723798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.06979 -39.38466 -37.80421 -37.11475 -35.25724 -32.98252 -32.06027 -30.75203 -28.49413 -27.78054 -26.47104 -24.51202 -23.62527 -23.25155 -22.30947 -20.16325 -19.00832 -18.66120 -17.48950 -16.76040 -16.57992 -16.34423 -15.88332 -15.43854 -15.22809 -14.78263 -14.10469 -13.98395 -13.69859 -13.50335 -13.12104 -12.69738 -12.62326 -12.39205 -12.26760 -12.11336 -11.82991 -11.34227 -11.01171 -10.77600 -10.68871 -10.38036 -10.32206 -10.25305 -9.81953 -9.66552 -9.42940 -9.32668 -9.19943 -8.73512 -8.24129 -6.79284 -5.70409 -3.01630 0.34761 0.76990 2.63169 2.99172 3.26812 3.43476 3.49254 3.51511 3.62038 4.16891 4.45248 4.54720 4.60868 4.69714 5.00474 5.14514 5.25537 5.47503 5.53834 5.57166 5.66028 5.72840 5.85893 5.91456 6.01428 6.06755 6.23760 6.29731 6.33733 6.51417 6.71407 6.77974 6.90909 7.09929 7.31473 7.37800 7.48776 7.62250 7.64825 8.04975 8.27306 9.11900 9.78157 10.69163 11.47537 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.031966 B = 0.003486 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.727792 B = 8029.119519 C = 8412.043368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.582 5.582 3 C 0.116 3.884 4 C 0.130 3.870 5 H 0.048 0.952 6 C -0.158 4.158 7 C 0.165 3.835 8 N -0.602 5.602 9 C -0.220 4.220 10 H 0.080 0.920 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.909 3.091 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.559 3.441 18 O -0.530 6.530 19 C 0.113 3.887 20 C -0.123 4.123 21 C -0.066 4.066 22 C -0.169 4.169 23 C 0.302 3.698 24 O -0.480 6.480 25 N -0.467 5.467 26 H 0.055 0.945 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.252 0.748 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.558 -22.070 -4.156 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.312 5.312 3 C -0.007 4.007 4 C 0.022 3.978 5 H 0.066 0.934 6 C -0.196 4.196 7 C 0.040 3.960 8 N -0.329 5.329 9 C -0.348 4.348 10 H 0.097 0.903 11 C -0.205 4.205 12 N -0.568 5.568 13 Si 0.739 3.261 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.218 1.218 17 C 0.344 3.656 18 O -0.406 6.406 19 C -0.025 4.025 20 C -0.144 4.144 21 C -0.091 4.091 22 C -0.190 4.190 23 C 0.122 3.878 24 O -0.288 6.288 25 N -0.190 5.190 26 H 0.074 0.926 27 H 0.122 0.878 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.171 0.829 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -10.218 -20.874 -4.689 23.709 hybrid contribution 0.853 -0.059 0.057 0.857 sum -9.365 -20.933 -4.632 23.395 Atomic orbital electron populations 1.22439 0.78237 1.03124 1.02871 1.47744 1.07960 1.05653 1.69863 1.21910 0.96843 0.82615 0.99313 1.22504 0.94102 0.88451 0.92701 0.93449 1.23752 0.97525 0.99313 0.99011 1.22135 0.90705 0.94690 0.88478 1.46120 1.61466 1.03267 1.22029 1.19078 1.26598 0.90951 0.98151 0.90251 1.24791 1.01132 0.97777 0.96780 1.69845 1.49731 1.19970 1.17295 0.86089 0.79489 0.81425 0.79056 1.20436 1.21804 1.21808 1.17862 0.86583 0.82879 0.78245 1.90813 1.12746 1.86543 1.50539 1.21101 0.88207 0.94741 0.98437 1.22171 1.02762 0.91558 0.97881 1.21554 0.93413 0.98803 0.95352 1.22325 0.95530 0.98707 1.02486 1.19311 0.84516 0.87889 0.96111 1.84793 1.14825 1.95548 1.33606 1.67711 1.07798 1.30000 1.13475 0.92602 0.87801 0.92153 0.90694 0.89565 0.90951 0.93489 0.91549 0.95552 0.93800 0.82919 0.83558 0.83855 0.73966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 8.93 59.85 0.53 1.55 16 2 N -0.58 -9.47 2.76 -182.58 -0.50 -9.97 16 3 C 0.12 2.23 5.29 -4.04 -0.02 2.21 16 4 C 0.13 2.85 4.54 -66.87 -0.30 2.55 16 5 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 6 C -0.16 -3.13 7.35 -25.79 -0.19 -3.32 16 7 C 0.17 4.06 7.40 -2.84 -0.02 4.04 16 8 N -0.60 -15.92 3.58 -169.71 -0.61 -16.52 16 9 C -0.22 -6.30 10.51 -15.06 -0.16 -6.46 16 10 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -27.96 11.55 55.49 0.64 -27.32 16 13 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 17 C 0.56 9.25 7.62 -12.18 -0.09 9.16 16 18 O -0.53 -10.36 16.04 5.36 0.09 -10.27 16 19 C 0.11 1.48 6.63 -83.02 -0.55 0.93 16 20 C -0.12 -1.28 9.63 -39.05 -0.38 -1.66 16 21 C -0.07 -0.48 10.16 -39.34 -0.40 -0.88 16 22 C -0.17 -1.22 10.05 -39.16 -0.39 -1.61 16 23 C 0.30 2.83 7.74 -17.14 -0.13 2.70 16 24 O -0.48 -3.68 13.56 -18.70 -0.25 -3.94 16 25 N -0.47 -5.53 6.04 -9.87 -0.06 -5.59 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.10 1.33 5.17 -52.97 -0.27 1.06 16 28 H 0.06 0.76 7.78 -51.93 -0.40 0.36 16 29 H 0.07 1.54 7.63 -51.93 -0.40 1.14 16 30 H 0.09 1.64 7.78 -51.93 -0.40 1.24 16 31 H 0.07 1.35 8.01 -51.93 -0.42 0.94 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.75 7.43 -51.93 -0.39 1.37 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.15 1.55 7.65 -52.49 -0.40 1.15 16 37 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.40 1.16 9.06 45.56 0.41 1.57 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -35.22 331.09 -7.28 -42.50 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.35 Total: -0.37 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -2.20 Total: 8.85 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.53 Total: -59.41 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.17 Total: -14.21 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.22 -7.28 -42.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085533384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.988 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds