Wall clock time and date at job start Tue Mar 31 2020 06:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00537 * 2 1 4 4 C 1.52999 * 109.46870 * 95.25331 * 3 2 1 5 5 H 1.09004 * 112.96155 * 67.37816 * 4 3 2 6 6 C 1.53939 * 113.77231 * 295.69349 * 4 3 2 7 7 C 1.53949 * 86.29219 * 222.09114 * 6 4 3 8 8 N 1.47585 * 113.76841 * 199.04635 * 4 3 2 9 9 C 1.36926 * 134.49311 * 318.93692 * 8 4 3 10 10 H 1.07997 * 120.00558 * 5.37376 * 9 8 4 11 11 C 1.38814 * 119.99877 * 185.36771 * 9 8 4 12 12 N 1.31616 * 120.00145 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00222 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46765 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47233 * 120.00155 * 13 11 9 16 16 H 1.48497 * 109.47596 * 240.00485 * 13 11 9 17 17 C 1.34784 * 119.99728 * 180.02562 * 2 1 3 18 18 O 1.21512 * 119.99797 * 183.17267 * 17 2 1 19 19 C 1.48158 * 119.99656 * 3.17850 * 17 2 1 20 20 C 1.39169 * 119.68451 * 172.79057 * 19 17 2 21 21 C 1.38748 * 119.18239 * 179.97438 * 20 19 17 22 22 C 1.38376 * 118.55656 * 0.02562 * 21 20 19 23 23 C 1.39242 * 119.31093 * 0.02562 * 22 21 20 24 24 O 1.35666 * 119.62044 * 180.02562 * 23 22 21 25 25 N 1.31930 * 120.76540 * 359.74139 * 23 22 21 26 26 H 1.08997 * 109.46999 * 263.86905 * 1 2 3 27 27 H 1.08994 * 109.47619 * 143.86100 * 1 2 3 28 28 H 1.09004 * 109.46862 * 23.85804 * 1 2 3 29 29 H 1.09000 * 109.47405 * 215.25741 * 3 2 1 30 30 H 1.08997 * 109.46715 * 335.25707 * 3 2 1 31 31 H 1.08999 * 113.73892 * 336.43974 * 6 4 3 32 32 H 1.09005 * 113.74187 * 107.63776 * 6 4 3 33 33 H 1.08996 * 113.76862 * 137.90287 * 7 6 4 34 34 H 1.08995 * 113.76868 * 269.19720 * 7 6 4 35 35 H 0.97003 * 120.00250 * 179.97438 * 12 11 9 36 36 H 1.07991 * 120.41151 * 359.97438 * 20 19 17 37 37 H 1.07993 * 120.72197 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.34307 * 180.02562 * 22 21 20 39 39 H 0.96696 * 114.00517 * 89.99319 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5670 1.6442 1.4364 5 1 3.2967 0.9661 1.8790 6 6 1.3502 1.9207 2.3380 7 6 2.1546 3.1125 2.8881 8 7 2.8987 3.0716 1.6115 9 6 3.6092 3.9880 0.8833 10 1 3.9978 3.7214 -0.0884 11 6 3.8299 5.2597 1.3940 12 7 3.3567 5.5845 2.5785 13 14 4.7999 6.5098 0.4010 14 1 5.2190 5.9009 -0.8870 15 1 3.9490 7.6969 0.1331 16 1 6.0022 6.9253 1.1670 17 6 2.1388 -1.1673 -0.0005 18 8 3.3525 -1.1681 0.0577 19 6 1.3996 -2.4493 -0.0722 20 6 2.1010 -3.6417 -0.2241 21 6 1.3982 -4.8363 -0.2895 22 6 0.0178 -4.7973 -0.2014 23 6 -0.6213 -3.5694 -0.0512 24 8 -1.9743 -3.5240 0.0364 25 7 0.0741 -2.4500 0.0125 26 1 -0.3633 -0.1098 1.0218 27 1 -0.3634 -0.8299 -0.6060 28 1 -0.3633 0.9399 -0.4157 29 1 3.1060 1.1637 -0.5932 30 1 1.5710 2.0500 -0.4301 31 1 0.4545 2.2116 1.7892 32 1 1.1625 1.1387 3.0738 33 1 1.5621 4.0173 3.0236 34 1 2.7625 2.8677 3.7590 35 1 3.5113 6.4731 2.9355 36 1 3.1788 -3.6373 -0.2902 37 1 1.9172 -5.7759 -0.4076 38 1 -0.5578 -5.7099 -0.2486 39 1 -2.3125 -3.5901 0.9399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085533384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:11 Heat of formation + Delta-G solvation = 18.987703 kcal Electronic energy + Delta-G solvation = -23106.196729 eV Core-core repulsion = 19630.323794 eV Total energy + Delta-G solvation = -3475.872935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.95002 -40.58649 -39.45598 -37.84344 -36.60953 -34.28332 -33.67065 -31.57037 -29.93224 -29.86407 -27.60405 -25.65492 -25.29870 -24.34623 -23.72777 -21.34939 -20.80254 -19.42414 -18.85396 -18.29229 -17.56499 -17.27199 -17.11508 -16.71700 -16.54509 -16.27075 -15.81596 -15.36980 -14.99846 -14.60006 -14.13352 -14.08427 -13.90539 -13.89251 -13.38729 -13.27843 -13.07681 -12.96970 -12.65080 -12.57706 -12.36879 -12.23996 -11.84177 -11.60397 -11.49868 -11.29789 -10.96733 -10.87729 -10.18088 -10.01554 -9.62130 -8.91230 -7.91426 -5.24562 -0.43684 0.11985 1.44075 1.45685 1.55902 1.62710 1.83743 2.45009 2.49583 2.76049 3.26702 3.30973 3.45536 3.78231 3.86598 3.94130 4.05997 4.14715 4.27790 4.35748 4.44200 4.52063 4.55646 4.66549 4.88086 4.91978 4.93091 5.00334 5.01624 5.09730 5.17341 5.23731 5.42991 5.52552 5.56492 5.67718 5.92364 6.29918 6.54206 6.77763 6.91860 7.04129 7.59965 8.56743 9.26573 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.031966 B = 0.003486 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.727792 B = 8029.119519 C = 8412.043368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.583 5.583 3 C 0.132 3.868 4 C 0.131 3.869 5 H 0.027 0.973 6 C -0.123 4.123 7 C 0.159 3.841 8 N -0.628 5.628 9 C -0.232 4.232 10 H 0.081 0.919 11 C -0.066 4.066 12 N -0.954 5.954 13 Si 0.977 3.023 14 H -0.267 1.267 15 H -0.288 1.288 16 H -0.294 1.294 17 C 0.554 3.446 18 O -0.573 6.573 19 C 0.086 3.914 20 C -0.129 4.129 21 C -0.053 4.053 22 C -0.149 4.149 23 C 0.297 3.703 24 O -0.486 6.486 25 N -0.486 5.486 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.011 0.989 35 H 0.249 0.751 36 H 0.147 0.853 37 H 0.186 0.814 38 H 0.180 0.820 39 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 -24.734 -5.121 28.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.313 5.313 3 C 0.008 3.992 4 C 0.024 3.976 5 H 0.044 0.956 6 C -0.161 4.161 7 C 0.033 3.967 8 N -0.355 5.355 9 C -0.360 4.360 10 H 0.099 0.901 11 C -0.259 4.259 12 N -0.603 5.603 13 Si 0.806 3.194 14 H -0.191 1.191 15 H -0.215 1.215 16 H -0.221 1.221 17 C 0.342 3.658 18 O -0.453 6.453 19 C -0.051 4.051 20 C -0.150 4.150 21 C -0.078 4.078 22 C -0.170 4.170 23 C 0.115 3.885 24 O -0.296 6.296 25 N -0.209 5.209 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.029 0.971 35 H 0.058 0.942 36 H 0.165 0.835 37 H 0.203 0.797 38 H 0.198 0.802 39 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -11.993 -23.578 -5.655 27.050 hybrid contribution 1.307 0.597 0.382 1.487 sum -10.686 -22.980 -5.273 25.886 Atomic orbital electron populations 1.22564 0.76169 1.03921 1.03526 1.47780 1.09010 1.04582 1.69955 1.21476 0.96508 0.84334 0.96881 1.22547 0.94355 0.85847 0.94845 0.95557 1.23494 0.96696 0.97441 0.98424 1.22104 0.91052 0.95724 0.87777 1.46504 1.61392 1.05013 1.22553 1.19428 1.26287 0.91735 0.98548 0.90142 1.25634 1.02515 0.99744 0.98030 1.70021 1.51152 1.20166 1.18925 0.85027 0.77674 0.78768 0.77978 1.19092 1.21456 1.22100 1.18492 0.86394 0.84086 0.76870 1.90773 1.14701 1.87387 1.52392 1.20547 0.88908 0.93459 1.02174 1.22274 1.02751 0.92032 0.97943 1.21964 0.93570 0.98879 0.93389 1.22725 0.95600 0.99143 0.99556 1.19580 0.85044 0.88027 0.95803 1.84764 1.13823 1.95486 1.35567 1.67463 1.07233 1.31805 1.14389 0.91985 0.86903 0.91482 0.92821 0.89270 0.89123 0.90733 0.93862 0.97110 0.94245 0.83507 0.79694 0.80221 0.71599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.02 8.93 127.77 1.14 3.16 16 2 N -0.58 -18.99 2.76 -849.86 -2.35 -21.34 16 3 C 0.13 5.16 5.29 86.38 0.46 5.62 16 4 C 0.13 5.86 4.54 45.09 0.20 6.06 16 5 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 6 C -0.12 -4.79 7.35 31.25 0.23 -4.56 16 7 C 0.16 8.00 7.40 86.44 0.64 8.64 16 8 N -0.63 -34.05 3.58 -690.85 -2.47 -36.53 16 9 C -0.23 -13.57 10.51 84.04 0.88 -12.69 16 10 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 11 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 12 N -0.95 -59.44 11.55 21.65 0.25 -59.19 16 13 Si 0.98 47.42 29.55 68.60 2.03 49.45 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 16 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 17 C 0.55 18.64 7.62 86.88 0.66 19.30 16 18 O -0.57 -23.38 16.04 -3.75 -0.06 -23.44 16 19 C 0.09 2.17 6.63 41.85 0.28 2.45 16 20 C -0.13 -2.51 9.63 22.62 0.22 -2.29 16 21 C -0.05 -0.57 10.16 22.42 0.23 -0.34 16 22 C -0.15 -1.48 10.05 22.54 0.23 -1.26 16 23 C 0.30 4.62 7.74 84.92 0.66 5.28 16 24 O -0.49 -5.79 13.56 -89.83 -1.22 -7.01 16 25 N -0.49 -10.61 6.04 -298.19 -1.80 -12.41 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.11 2.73 5.17 -4.44 -0.02 2.71 16 28 H 0.07 1.59 7.78 -2.38 -0.02 1.57 16 29 H 0.05 2.30 7.63 -2.39 -0.02 2.29 16 30 H 0.09 3.41 7.78 -2.39 -0.02 3.39 16 31 H 0.09 3.24 8.01 -2.39 -0.02 3.22 16 32 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.04 2.36 7.43 -2.39 -0.02 2.34 16 34 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.15 2.95 7.65 -2.92 -0.02 2.93 16 37 H 0.19 0.55 8.06 -2.91 -0.02 0.52 16 38 H 0.18 0.52 8.06 -2.91 -0.02 0.50 16 39 H 0.42 0.98 9.06 -74.06 -0.67 0.31 16 Total: -1.00 -79.39 331.09 1.06 -78.33 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 0.39 Total: 6.21 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: 6.29 Total: 25.93 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -6.37 Total: -129.46 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -1.28 Total: -30.45 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -79.39 1.06 -78.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085533384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.318 kcal (2) G-P(sol) polarization free energy of solvation -79.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds