Wall clock time and date at job start Tue Mar 31 2020 06:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86306 * 109.46685 * 2 1 4 4 C 1.86298 * 109.47150 * 119.99834 * 2 1 3 5 5 N 1.46896 * 109.47305 * 290.07718 * 4 2 1 6 6 C 1.47015 * 111.03839 * 34.18247 * 5 4 2 7 7 C 1.53096 * 109.29375 * 182.35175 * 6 5 4 8 8 O 1.43012 * 109.26021 * 303.17265 * 7 6 5 9 9 C 1.43012 * 113.73674 * 58.67022 * 8 7 6 10 10 C 1.50703 * 109.50437 * 181.39914 * 9 8 7 11 11 N 1.27943 * 120.00520 * 104.78433 * 10 9 8 12 12 Si 1.86805 * 120.00006 * 284.78209 * 10 9 8 13 13 H 1.48502 * 109.47081 * 89.99657 * 12 10 9 14 14 H 1.48496 * 109.47264 * 210.00095 * 12 10 9 15 15 H 1.48505 * 109.46988 * 330.00153 * 12 10 9 16 16 C 1.47014 * 111.00078 * 157.84118 * 5 4 2 17 17 C 1.86796 * 109.47187 * 240.00400 * 2 1 3 18 18 C 1.38233 * 119.99987 * 149.72673 * 17 2 1 19 19 C 1.38233 * 120.00050 * 179.76312 * 18 17 2 20 20 C 1.38244 * 119.99942 * 0.50628 * 19 18 17 21 21 C 1.38237 * 119.99571 * 359.74632 * 20 19 18 22 22 C 1.38233 * 119.99785 * 329.99558 * 17 2 1 23 23 H 1.09002 * 109.47411 * 308.87233 * 1 2 3 24 24 H 1.09002 * 109.47279 * 68.87796 * 1 2 3 25 25 H 1.09002 * 109.46793 * 188.87550 * 1 2 3 26 26 H 1.08998 * 109.46802 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47243 * 300.00101 * 3 2 1 28 28 H 1.09005 * 109.46889 * 60.00224 * 3 2 1 29 29 H 1.09003 * 109.46924 * 170.07258 * 4 2 1 30 30 H 1.09005 * 109.46831 * 50.07709 * 4 2 1 31 31 H 1.08995 * 109.47027 * 62.41243 * 6 5 4 32 32 H 1.09007 * 109.53999 * 302.33094 * 6 5 4 33 33 H 1.09006 * 109.50479 * 183.23645 * 7 6 5 34 34 H 1.09000 * 109.50691 * 63.10925 * 7 6 5 35 35 H 1.08996 * 109.54178 * 61.28959 * 9 8 7 36 36 H 0.96996 * 120.00344 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.50692 * 57.67419 * 16 5 4 38 38 H 1.08995 * 109.50435 * 297.58197 * 16 5 4 39 39 H 1.07998 * 120.00383 * 359.97438 * 18 17 2 40 40 H 1.07996 * 120.00298 * 180.22842 * 19 18 17 41 41 H 1.07994 * 120.00342 * 179.72358 * 20 19 18 42 42 H 1.07999 * 119.99872 * 179.97438 * 21 20 19 43 43 H 1.08002 * 120.00183 * 0.02562 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7566 0.0000 4 6 2.4840 -0.8782 1.5211 5 7 2.1990 -0.0617 2.7086 6 6 0.9347 0.6724 2.5533 7 6 0.7065 1.5529 3.7847 8 8 0.7171 0.7351 4.9579 9 6 1.9343 0.0071 5.1412 10 6 1.8295 -0.8447 6.3800 11 7 1.6540 -2.1077 6.2751 12 14 1.9559 -0.0565 8.0689 13 1 0.6025 0.3440 8.5308 14 1 2.5380 -1.0301 9.0272 15 1 2.8275 1.1433 7.9913 16 6 2.1750 -0.8892 3.9235 17 6 2.4857 -0.8805 -1.5252 18 6 3.6908 -0.5113 -2.0928 19 6 4.1540 -1.1661 -3.2187 20 6 3.4069 -2.1832 -3.7831 21 6 2.1993 -2.5488 -3.2185 22 6 1.7386 -1.8975 -2.0896 23 1 -0.3634 0.6449 0.8001 24 1 -0.3634 0.3703 -0.9586 25 1 -0.3633 -1.0154 0.1586 26 1 3.5739 1.7566 0.0005 27 1 2.1205 2.2704 -0.8900 28 1 2.1205 2.2703 0.8901 29 1 3.5595 -1.0342 1.4370 30 1 1.9833 -1.8419 1.6141 31 1 0.1127 -0.0366 2.4553 32 1 0.9837 1.2983 1.6622 33 1 -0.2573 2.0549 3.6997 34 1 1.5003 2.2968 3.8524 35 1 2.7642 0.7055 5.2489 36 1 1.5870 -2.6559 7.0724 37 1 3.1301 -1.4030 4.0329 38 1 1.3731 -1.6235 3.8479 39 1 4.2722 0.2865 -1.6547 40 1 5.0973 -0.8802 -3.6600 41 1 3.7666 -2.6918 -4.6653 42 1 1.6154 -3.3431 -3.6596 43 1 0.7948 -2.1827 -1.6489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116905379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:09 Heat of formation + Delta-G solvation = -4.014160 kcal Electronic energy + Delta-G solvation = -21538.982289 eV Core-core repulsion = 18515.202970 eV Total energy + Delta-G solvation = -3023.779319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.73388 -39.65814 -36.98787 -36.36045 -32.18301 -31.76760 -31.57597 -29.57896 -29.14946 -28.51889 -25.89417 -24.93901 -23.22819 -22.92846 -21.86308 -20.79619 -18.08184 -17.78936 -17.35186 -17.21217 -16.16535 -15.98863 -15.89918 -15.65617 -15.57277 -14.97734 -14.45814 -14.32315 -14.25134 -14.23723 -14.08360 -13.66798 -13.53572 -13.42582 -13.31544 -13.13519 -12.99501 -12.86577 -12.31833 -12.14080 -12.13495 -11.93242 -11.78853 -11.41811 -10.97843 -10.95930 -10.83688 -10.56358 -9.91719 -9.73338 -9.66538 -9.23938 0.38130 0.58939 0.65594 1.04419 1.40486 1.62712 1.68945 1.75246 1.80735 1.88505 2.41644 2.82160 2.97489 3.01931 3.69503 3.94399 4.03469 4.09501 4.15637 4.19271 4.23843 4.26585 4.37134 4.57760 4.59738 4.63353 4.64266 4.67740 4.71712 4.72684 4.76998 4.81099 4.87987 4.98585 5.02821 5.08174 5.18819 5.19747 5.43665 5.53071 5.61155 5.65113 5.69306 5.94264 6.02946 6.16663 6.19840 6.77472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.075 2.925 3 C -0.446 4.446 4 C -0.244 4.244 5 N -0.514 5.514 6 C -0.024 4.024 7 C 0.065 3.935 8 O -0.374 6.374 9 C 0.121 3.879 10 C -0.001 4.001 11 N -0.612 5.612 12 Si 0.947 3.053 13 H -0.236 1.236 14 H -0.248 1.248 15 H -0.233 1.233 16 C 0.034 3.966 17 C -0.374 4.374 18 C -0.087 4.087 19 C -0.133 4.133 20 C -0.109 4.109 21 C -0.133 4.133 22 C -0.089 4.089 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.342 0.658 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 1.640 -0.077 1.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.263 2.737 3 C -0.554 4.554 4 C -0.418 4.418 5 N -0.239 5.239 6 C -0.151 4.151 7 C -0.012 4.012 8 O -0.292 6.292 9 C 0.062 3.938 10 C -0.250 4.250 11 N -0.227 5.227 12 Si 0.762 3.238 13 H -0.159 1.159 14 H -0.171 1.171 15 H -0.155 1.155 16 C -0.094 4.094 17 C -0.417 4.417 18 C -0.105 4.105 19 C -0.151 4.151 20 C -0.127 4.127 21 C -0.151 4.151 22 C -0.107 4.107 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.159 0.841 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.599 1.645 0.080 1.752 hybrid contribution -0.313 -0.975 0.010 1.024 sum 0.285 0.671 0.090 0.734 Atomic orbital electron populations 1.26779 1.19982 1.05018 1.05386 0.78069 0.66590 0.66623 0.62380 1.26265 1.06860 1.17600 1.04665 1.27082 1.06732 1.02285 1.05699 1.62159 1.31604 1.27980 1.02126 1.23615 0.92250 0.98768 1.00463 1.22720 1.03009 0.92248 0.83249 1.87953 1.36169 1.60898 1.44173 1.21235 0.88256 0.92510 0.91809 1.30082 0.93129 0.95762 1.06075 1.68117 1.06827 1.07775 1.40015 0.85503 0.83055 0.81510 0.73710 1.15904 1.17144 1.15533 1.22706 1.02921 0.94870 0.88940 1.27241 0.98937 1.03306 1.12180 1.21107 0.95690 0.98475 0.95234 1.21284 0.99988 0.96899 0.96919 1.21243 0.94901 0.97064 0.99517 1.21274 0.96680 1.00282 0.96882 1.21092 0.99053 0.95219 0.95313 0.89964 0.90808 0.91118 0.90727 0.91111 0.90294 0.89488 0.93042 0.92483 0.87980 0.87836 0.91649 0.89411 0.84115 0.89653 0.92479 0.86114 0.86256 0.86240 0.86314 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.76 7.73 101.05 0.78 1.54 16 2 Si 1.08 -2.01 9.34 -169.99 -1.59 -3.60 16 3 C -0.45 0.77 8.47 101.05 0.86 1.62 16 4 C -0.24 0.05 4.89 60.06 0.29 0.34 16 5 N -0.51 -0.25 4.81 -168.84 -0.81 -1.07 16 6 C -0.02 0.01 3.40 -3.71 -0.01 0.00 16 7 C 0.06 -0.04 7.01 37.21 0.26 0.22 16 8 O -0.37 -0.67 10.36 -35.23 -0.37 -1.03 16 9 C 0.12 0.13 2.72 -27.83 -0.08 0.05 16 10 C 0.00 0.00 5.29 -13.90 -0.07 -0.07 16 11 N -0.61 -0.80 12.53 56.23 0.70 -0.09 16 12 Si 0.95 -0.59 29.56 -169.99 -5.03 -5.61 16 13 H -0.24 -0.14 7.11 56.52 0.40 0.26 16 14 H -0.25 0.10 7.11 56.52 0.40 0.50 16 15 H -0.23 0.11 7.11 56.52 0.40 0.51 16 16 C 0.03 0.05 4.23 -3.71 -0.02 0.04 16 17 C -0.37 -0.14 4.59 -39.59 -0.18 -0.32 16 18 C -0.09 -0.07 9.29 -39.59 -0.37 -0.44 16 19 C -0.13 -0.16 10.05 -39.58 -0.40 -0.56 16 20 C -0.11 -0.15 10.05 -39.58 -0.40 -0.55 16 21 C -0.13 -0.18 10.05 -39.58 -0.40 -0.58 16 22 C -0.09 -0.08 9.29 -39.58 -0.37 -0.45 16 23 H 0.08 -0.17 5.12 -51.93 -0.27 -0.44 16 24 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 26 H 0.07 -0.12 7.68 -51.93 -0.40 -0.52 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 28 H 0.08 -0.16 6.30 -51.93 -0.33 -0.48 16 29 H 0.09 -0.01 7.96 -51.93 -0.41 -0.42 16 30 H 0.05 0.02 7.70 -51.93 -0.40 -0.38 16 31 H 0.06 -0.01 6.83 -51.93 -0.35 -0.36 16 32 H 0.10 -0.23 2.53 -51.93 -0.13 -0.37 16 33 H 0.10 -0.24 8.14 -51.93 -0.42 -0.66 16 34 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 35 H 0.09 -0.03 8.01 -51.93 -0.42 -0.45 16 36 H 0.34 -0.19 8.23 -40.82 -0.34 -0.52 16 37 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.06 0.17 7.72 -51.93 -0.40 -0.23 16 39 H 0.12 -0.13 7.42 -52.49 -0.39 -0.52 16 40 H 0.12 -0.05 8.06 -52.49 -0.42 -0.48 16 41 H 0.12 -0.04 8.06 -52.49 -0.42 -0.46 16 42 H 0.12 -0.03 8.06 -52.49 -0.42 -0.45 16 43 H 0.12 -0.09 7.69 -52.49 -0.40 -0.50 16 LS Contribution 340.67 15.07 5.13 5.13 Total: 0.00 -4.90 340.67 -8.86 -13.76 By element: Atomic # 1 Polarization: -1.54 SS G_CDS: -6.81 Total: -8.35 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -0.10 Total: 0.86 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -0.11 Total: -1.16 kcal Atomic # 8 Polarization: -0.67 SS G_CDS: -0.37 Total: -1.03 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: -6.61 Total: -9.21 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -4.90 -8.86 -13.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116905379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.747 kcal (2) G-P(sol) polarization free energy of solvation -4.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds