Wall clock time and date at job start Tue Mar 31 2020 06:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86306 * 109.46685 * 2 1 4 4 C 1.86298 * 109.47150 * 119.99834 * 2 1 3 5 5 N 1.46896 * 109.47305 * 290.07718 * 4 2 1 6 6 C 1.47015 * 111.03839 * 34.18247 * 5 4 2 7 7 C 1.53096 * 109.29375 * 182.35175 * 6 5 4 8 8 O 1.43012 * 109.26021 * 303.17265 * 7 6 5 9 9 C 1.43012 * 113.73674 * 58.67022 * 8 7 6 10 10 C 1.50703 * 109.50437 * 181.39914 * 9 8 7 11 11 N 1.27943 * 120.00520 * 104.78433 * 10 9 8 12 12 Si 1.86805 * 120.00006 * 284.78209 * 10 9 8 13 13 H 1.48502 * 109.47081 * 89.99657 * 12 10 9 14 14 H 1.48496 * 109.47264 * 210.00095 * 12 10 9 15 15 H 1.48505 * 109.46988 * 330.00153 * 12 10 9 16 16 C 1.47014 * 111.00078 * 157.84118 * 5 4 2 17 17 C 1.86796 * 109.47187 * 240.00400 * 2 1 3 18 18 C 1.38233 * 119.99987 * 149.72673 * 17 2 1 19 19 C 1.38233 * 120.00050 * 179.76312 * 18 17 2 20 20 C 1.38244 * 119.99942 * 0.50628 * 19 18 17 21 21 C 1.38237 * 119.99571 * 359.74632 * 20 19 18 22 22 C 1.38233 * 119.99785 * 329.99558 * 17 2 1 23 23 H 1.09002 * 109.47411 * 308.87233 * 1 2 3 24 24 H 1.09002 * 109.47279 * 68.87796 * 1 2 3 25 25 H 1.09002 * 109.46793 * 188.87550 * 1 2 3 26 26 H 1.08998 * 109.46802 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47243 * 300.00101 * 3 2 1 28 28 H 1.09005 * 109.46889 * 60.00224 * 3 2 1 29 29 H 1.09003 * 109.46924 * 170.07258 * 4 2 1 30 30 H 1.09005 * 109.46831 * 50.07709 * 4 2 1 31 31 H 1.08995 * 109.47027 * 62.41243 * 6 5 4 32 32 H 1.09007 * 109.53999 * 302.33094 * 6 5 4 33 33 H 1.09006 * 109.50479 * 183.23645 * 7 6 5 34 34 H 1.09000 * 109.50691 * 63.10925 * 7 6 5 35 35 H 1.08996 * 109.54178 * 61.28959 * 9 8 7 36 36 H 0.96996 * 120.00344 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.50692 * 57.67419 * 16 5 4 38 38 H 1.08995 * 109.50435 * 297.58197 * 16 5 4 39 39 H 1.07998 * 120.00383 * 359.97438 * 18 17 2 40 40 H 1.07996 * 120.00298 * 180.22842 * 19 18 17 41 41 H 1.07994 * 120.00342 * 179.72358 * 20 19 18 42 42 H 1.07999 * 119.99872 * 179.97438 * 21 20 19 43 43 H 1.08002 * 120.00183 * 0.02562 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7566 0.0000 4 6 2.4840 -0.8782 1.5211 5 7 2.1990 -0.0617 2.7086 6 6 0.9347 0.6724 2.5533 7 6 0.7065 1.5529 3.7847 8 8 0.7171 0.7351 4.9579 9 6 1.9343 0.0071 5.1412 10 6 1.8295 -0.8447 6.3800 11 7 1.6540 -2.1077 6.2751 12 14 1.9559 -0.0565 8.0689 13 1 0.6025 0.3440 8.5308 14 1 2.5380 -1.0301 9.0272 15 1 2.8275 1.1433 7.9913 16 6 2.1750 -0.8892 3.9235 17 6 2.4857 -0.8805 -1.5252 18 6 3.6908 -0.5113 -2.0928 19 6 4.1540 -1.1661 -3.2187 20 6 3.4069 -2.1832 -3.7831 21 6 2.1993 -2.5488 -3.2185 22 6 1.7386 -1.8975 -2.0896 23 1 -0.3634 0.6449 0.8001 24 1 -0.3634 0.3703 -0.9586 25 1 -0.3633 -1.0154 0.1586 26 1 3.5739 1.7566 0.0005 27 1 2.1205 2.2704 -0.8900 28 1 2.1205 2.2703 0.8901 29 1 3.5595 -1.0342 1.4370 30 1 1.9833 -1.8419 1.6141 31 1 0.1127 -0.0366 2.4553 32 1 0.9837 1.2983 1.6622 33 1 -0.2573 2.0549 3.6997 34 1 1.5003 2.2968 3.8524 35 1 2.7642 0.7055 5.2489 36 1 1.5870 -2.6559 7.0724 37 1 3.1301 -1.4030 4.0329 38 1 1.3731 -1.6235 3.8479 39 1 4.2722 0.2865 -1.6547 40 1 5.0973 -0.8802 -3.6600 41 1 3.7666 -2.6918 -4.6653 42 1 1.6154 -3.3431 -3.6596 43 1 0.7948 -2.1827 -1.6489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116905379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:08 Heat of formation + Delta-G solvation = 4.317004 kcal Electronic energy + Delta-G solvation = -21538.621023 eV Core-core repulsion = 18515.202970 eV Total energy + Delta-G solvation = -3023.418053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.74991 -39.66567 -37.00625 -36.39921 -32.17869 -31.78191 -31.58506 -29.55188 -29.06824 -28.37202 -25.92420 -24.92021 -23.24985 -22.94943 -21.86478 -20.84234 -18.07994 -17.81637 -17.37542 -17.20628 -16.13593 -15.99363 -15.91950 -15.67385 -15.60418 -14.98339 -14.45837 -14.29726 -14.20363 -14.19953 -14.00272 -13.63772 -13.54087 -13.36561 -13.20806 -13.09115 -12.94148 -12.82798 -12.28002 -12.12131 -12.08436 -11.92619 -11.78230 -11.42420 -10.90525 -10.85086 -10.82104 -10.57053 -9.94209 -9.78053 -9.69090 -9.28447 0.35721 0.54149 0.63799 1.06402 1.46348 1.71131 1.72857 1.85061 1.91029 1.94848 2.50542 2.84133 2.97821 2.98327 3.69579 3.96270 4.03790 4.09765 4.19142 4.19508 4.23684 4.28031 4.40497 4.56535 4.60538 4.67398 4.71287 4.77350 4.78942 4.80902 4.88508 4.92425 4.94686 4.97539 5.04172 5.06926 5.12407 5.18920 5.55414 5.57397 5.63062 5.64746 5.73698 5.89467 6.03694 6.16764 6.18895 6.79629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.473 4.473 2 Si 1.131 2.869 3 C -0.452 4.452 4 C -0.257 4.257 5 N -0.515 5.515 6 C -0.028 4.028 7 C 0.056 3.944 8 O -0.391 6.391 9 C 0.114 3.886 10 C -0.007 4.007 11 N -0.634 5.634 12 Si 0.990 3.010 13 H -0.254 1.254 14 H -0.251 1.251 15 H -0.231 1.231 16 C 0.037 3.963 17 C -0.386 4.386 18 C -0.100 4.100 19 C -0.149 4.149 20 C -0.126 4.126 21 C -0.150 4.150 22 C -0.105 4.105 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.349 0.651 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 2.858 0.071 2.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.316 2.684 3 C -0.560 4.560 4 C -0.429 4.429 5 N -0.240 5.240 6 C -0.155 4.155 7 C -0.020 4.020 8 O -0.309 6.309 9 C 0.056 3.944 10 C -0.255 4.255 11 N -0.251 5.251 12 Si 0.805 3.195 13 H -0.178 1.178 14 H -0.174 1.174 15 H -0.153 1.153 16 C -0.092 4.092 17 C -0.427 4.427 18 C -0.118 4.118 19 C -0.166 4.166 20 C -0.144 4.144 21 C -0.168 4.168 22 C -0.123 4.123 23 H 0.107 0.893 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.167 0.833 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.643 2.837 0.216 2.917 hybrid contribution -0.325 -1.390 -0.065 1.429 sum 0.318 1.446 0.152 1.489 Atomic orbital electron populations 1.26866 1.20267 1.05080 1.05819 0.77244 0.65753 0.65728 0.59714 1.26306 1.07081 1.17416 1.05207 1.27343 1.06601 1.02299 1.06701 1.62184 1.32216 1.27719 1.01870 1.23737 0.91501 0.98810 1.01448 1.22973 1.04506 0.92176 0.82385 1.87927 1.36522 1.61266 1.45208 1.21376 0.88651 0.92763 0.91635 1.30417 0.92453 0.95694 1.06982 1.68127 1.07560 1.08459 1.40912 0.84905 0.81735 0.80908 0.71971 1.17802 1.17433 1.15288 1.22621 1.01720 0.94801 0.90024 1.27763 0.98804 1.03186 1.12949 1.21437 0.96115 0.98990 0.95276 1.21574 1.00645 0.97067 0.97359 1.21491 0.95200 0.97534 1.00182 1.21543 0.97060 1.00865 0.97363 1.21393 0.99845 0.95549 0.95475 0.89255 0.90518 0.91433 0.90567 0.90638 0.89665 0.89861 0.94101 0.93127 0.86144 0.86090 0.90521 0.87989 0.83304 0.90264 0.94609 0.84409 0.85058 0.85214 0.85352 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.79 7.73 113.37 0.88 2.67 16 2 Si 1.13 -4.63 9.34 68.60 0.64 -3.99 16 3 C -0.45 2.16 8.47 113.37 0.96 3.12 16 4 C -0.26 -0.05 4.89 127.69 0.62 0.57 16 5 N -0.52 -0.64 4.81 -688.08 -3.31 -3.95 16 6 C -0.03 0.04 3.40 86.31 0.29 0.34 16 7 C 0.06 -0.11 7.01 72.01 0.50 0.40 16 8 O -0.39 -1.39 10.36 -148.98 -1.54 -2.93 16 9 C 0.11 0.28 2.72 29.88 0.08 0.36 16 10 C -0.01 -0.01 5.29 88.68 0.47 0.46 16 11 N -0.63 -2.31 12.53 24.11 0.30 -2.01 16 12 Si 0.99 -1.41 29.56 68.60 2.03 0.61 16 13 H -0.25 -0.36 7.11 99.48 0.71 0.35 16 14 H -0.25 0.29 7.11 99.48 0.71 1.00 16 15 H -0.23 0.44 7.11 99.48 0.71 1.15 16 16 C 0.04 0.15 4.23 86.31 0.37 0.52 16 17 C -0.39 -0.35 4.59 22.27 0.10 -0.25 16 18 C -0.10 -0.17 9.29 22.27 0.21 0.04 16 19 C -0.15 -0.43 10.05 22.27 0.22 -0.21 16 20 C -0.13 -0.44 10.05 22.27 0.22 -0.22 16 21 C -0.15 -0.53 10.05 22.27 0.22 -0.30 16 22 C -0.10 -0.26 9.29 22.27 0.21 -0.05 16 23 H 0.09 -0.46 5.12 -2.39 -0.01 -0.47 16 24 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 25 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 26 H 0.08 -0.35 7.68 -2.39 -0.02 -0.37 16 27 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 28 H 0.08 -0.49 6.30 -2.38 -0.02 -0.51 16 29 H 0.08 0.05 7.96 -2.39 -0.02 0.03 16 30 H 0.04 0.09 7.70 -2.38 -0.02 0.07 16 31 H 0.05 0.00 6.83 -2.39 -0.02 -0.02 16 32 H 0.12 -0.70 2.53 -2.38 -0.01 -0.70 16 33 H 0.12 -0.70 8.14 -2.38 -0.02 -0.72 16 34 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H 0.10 -0.10 8.01 -2.39 -0.02 -0.12 16 36 H 0.35 -0.05 8.23 -92.71 -0.76 -0.81 16 37 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.04 0.29 7.72 -2.39 -0.02 0.27 16 39 H 0.14 -0.38 7.42 -2.91 -0.02 -0.40 16 40 H 0.13 -0.08 8.06 -2.91 -0.02 -0.11 16 41 H 0.13 0.02 8.06 -2.91 -0.02 0.00 16 42 H 0.13 0.04 8.06 -2.91 -0.02 0.02 16 43 H 0.13 -0.15 7.69 -2.91 -0.02 -0.17 16 Total: 0.00 -11.73 340.67 4.46 -7.26 By element: Atomic # 1 Polarization: -3.42 SS G_CDS: 0.99 Total: -2.44 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 5.36 Total: 7.44 kcal Atomic # 7 Polarization: -2.95 SS G_CDS: -3.01 Total: -5.96 kcal Atomic # 8 Polarization: -1.39 SS G_CDS: -1.54 Total: -2.93 kcal Atomic # 14 Polarization: -6.04 SS G_CDS: 2.67 Total: -3.37 kcal Total: -11.73 4.46 -7.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116905379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.578 kcal (2) G-P(sol) polarization free energy of solvation -11.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds