Wall clock time and date at job start Tue Mar 31 2020 06:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34121 * 125.69697 * 2 1 4 4 C 1.38616 * 107.33843 * 179.73589 * 3 2 1 5 5 C 1.46927 * 126.49069 * 180.23766 * 4 3 2 6 6 O 1.21418 * 119.99656 * 0.19874 * 5 4 3 7 7 C 1.49307 * 120.00006 * 180.19942 * 5 4 3 8 8 O 1.21373 * 119.99817 * 8.59943 * 7 5 4 9 9 N 1.34773 * 120.00098 * 188.59857 * 7 5 4 10 10 C 1.46928 * 120.62817 * 8.76552 * 9 7 5 11 11 C 1.53191 * 108.77539 * 126.36710 * 10 9 7 12 12 C 1.53042 * 109.31165 * 54.63505 * 11 10 9 13 13 C 1.53042 * 109.53459 * 298.63222 * 12 11 10 14 14 H 1.08998 * 109.49925 * 301.41380 * 13 12 11 15 15 C 1.50701 * 109.49254 * 181.32078 * 13 12 11 16 16 H 1.07996 * 120.00733 * 359.97438 * 15 13 12 17 17 C 1.37882 * 119.99991 * 180.02562 * 15 13 12 18 18 N 1.31517 * 119.99466 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00481 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46928 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47210 * 119.99407 * 19 17 15 22 22 H 1.48498 * 109.47085 * 239.99845 * 19 17 15 23 23 C 1.46923 * 120.63313 * 188.48120 * 9 7 5 24 24 C 1.41565 * 107.01866 * 0.38348 * 4 3 2 25 25 N 1.30344 * 107.98963 * 359.61227 * 24 4 3 26 26 H 1.09007 * 109.46961 * 269.99752 * 1 2 3 27 27 H 1.08999 * 109.47339 * 29.99684 * 1 2 3 28 28 H 1.08994 * 109.47506 * 150.00052 * 1 2 3 29 29 H 1.08002 * 126.32954 * 359.97438 * 3 2 1 30 30 H 1.09004 * 109.58090 * 246.15278 * 10 9 7 31 31 H 1.09002 * 109.58810 * 6.57633 * 10 9 7 32 32 H 1.09004 * 109.49668 * 174.58357 * 11 10 9 33 33 H 1.08997 * 109.49858 * 294.68194 * 11 10 9 34 34 H 1.09003 * 109.46296 * 58.65425 * 12 11 10 35 35 H 1.09000 * 109.45692 * 178.61113 * 12 11 10 36 36 H 0.97006 * 119.99596 * 179.97438 * 18 17 15 37 37 H 1.09006 * 109.58316 * 353.42214 * 23 9 7 38 38 H 1.09002 * 109.58641 * 113.83939 * 23 9 7 39 39 H 1.07998 * 126.00596 * 179.87094 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2476 1.0892 0.0000 4 6 3.5632 0.6526 0.0061 5 6 4.7645 1.4985 0.0132 6 8 4.6554 2.7078 0.0178 7 6 6.1194 0.8711 0.0148 8 8 6.2338 -0.3263 -0.1469 9 7 7.2153 1.6344 0.1957 10 6 7.0886 3.0464 0.5820 11 6 7.9296 3.2911 1.8388 12 6 9.3682 2.8364 1.5816 13 6 9.3838 1.3372 1.2743 14 1 8.9529 0.7895 2.1125 15 6 10.8039 0.8840 1.0532 16 1 11.6146 1.5939 1.1241 17 6 11.0681 -0.4370 0.7592 18 7 10.0808 -1.3014 0.6723 19 14 12.8283 -0.9988 0.4844 20 1 13.7466 0.1582 0.6367 21 1 13.1763 -2.0422 1.4820 22 1 12.9611 -1.5587 -0.8846 23 6 8.5594 1.0689 0.0166 24 6 3.5301 -0.7626 0.0007 25 7 2.2814 -1.1361 0.0004 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.9143 2.1165 -0.0004 30 1 7.4490 3.6804 -0.2281 31 1 6.0437 3.2757 0.7911 32 1 7.9218 4.3540 2.0805 33 1 7.5125 2.7250 2.6716 34 1 9.7764 3.3853 0.7330 35 1 9.9744 3.0322 2.4660 36 1 10.2666 -2.2307 0.4651 37 1 8.4846 -0.0062 -0.1471 38 1 9.0421 1.5384 -0.8405 39 1 4.3887 -1.4177 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118774269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:35 Heat of formation + Delta-G solvation = 23.519264 kcal Electronic energy + Delta-G solvation = -23298.711653 eV Core-core repulsion = 19823.035221 eV Total energy + Delta-G solvation = -3475.676432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.43741 -39.95840 -37.95879 -36.73728 -33.61505 -33.23504 -31.72561 -30.49128 -29.75869 -27.78804 -25.84463 -25.00335 -23.54121 -21.87835 -21.39271 -20.81198 -19.55719 -18.55059 -17.19635 -16.63213 -16.00286 -15.84365 -15.81363 -15.09355 -14.71908 -14.47031 -14.30408 -13.86363 -13.42373 -13.35303 -13.15329 -12.85528 -12.79706 -12.76207 -12.54784 -12.10732 -11.79161 -11.43669 -10.97836 -10.87586 -10.59251 -10.41831 -10.26433 -10.09273 -9.83571 -9.68602 -9.15995 -9.08118 -8.81341 -8.51873 -8.41751 -7.76661 -5.98360 -4.06934 0.90993 1.86326 2.20825 2.75983 3.28816 3.34987 3.40182 3.43228 3.78451 4.27860 4.44090 4.53305 4.62533 4.78234 5.00404 5.05724 5.10325 5.31645 5.41852 5.60100 5.65109 5.73323 5.88738 6.19389 6.30513 6.40580 6.52090 6.61755 6.62753 6.71541 6.87358 7.01280 7.06827 7.21870 7.39816 7.54009 7.65645 7.88756 7.99467 8.19552 8.39069 8.66242 8.97349 9.58612 11.06849 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023969 B = 0.004070 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.895159 B = 6878.670305 C = 7858.396756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.366 5.366 3 C 0.129 3.871 4 C -0.313 4.313 5 C 0.427 3.573 6 O -0.446 6.446 7 C 0.477 3.523 8 O -0.512 6.512 9 N -0.575 5.575 10 C 0.077 3.923 11 C -0.135 4.135 12 C -0.112 4.112 13 C 0.040 3.960 14 H 0.030 0.970 15 C -0.519 4.519 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.880 5.880 19 Si 0.892 3.108 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.107 3.893 24 C 0.121 3.879 25 N -0.310 5.310 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.189 0.811 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.263 0.737 37 H 0.125 0.875 38 H 0.047 0.953 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.889 6.702 -1.196 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.143 5.143 3 C -0.024 4.024 4 C -0.326 4.326 5 C 0.303 3.697 6 O -0.322 6.322 7 C 0.260 3.740 8 O -0.389 6.389 9 N -0.307 5.307 10 C -0.045 4.045 11 C -0.173 4.173 12 C -0.150 4.150 13 C 0.021 3.979 14 H 0.048 0.952 15 C -0.558 4.558 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.517 5.517 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.013 4.013 24 C -0.067 4.067 25 N -0.129 5.129 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.206 0.794 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.143 0.857 38 H 0.065 0.935 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -18.878 5.493 -1.327 19.705 hybrid contribution 1.537 0.402 -0.149 1.596 sum -17.340 5.894 -1.476 18.374 Atomic orbital electron populations 1.21980 0.73670 1.04920 1.03874 1.48508 1.07320 1.04240 1.54275 1.23204 0.90346 0.93750 0.95065 1.20586 0.92941 0.94819 1.24255 1.21843 0.89110 0.87635 0.71098 1.90327 1.88614 1.16310 1.36946 1.20319 0.85794 0.87474 0.80414 1.90674 1.85922 1.13685 1.48615 1.48553 1.07424 1.11099 1.63658 1.22543 1.03520 0.81599 0.96883 1.21973 0.97803 1.00065 0.97434 1.21650 0.93541 0.99479 1.00313 1.18890 0.95274 0.90022 0.93737 0.95207 1.21120 0.91780 0.93970 1.48928 0.92282 1.25061 0.97095 0.96830 0.95090 1.69893 1.30556 1.03455 1.47845 0.86534 0.84996 0.78667 0.77799 1.19824 1.21019 1.20980 1.22364 0.77012 1.02651 0.99257 1.24858 0.94963 0.94415 0.92461 1.77266 1.02391 1.07096 1.26181 0.90208 0.89141 0.88809 0.79445 0.92035 0.86739 0.92146 0.92362 0.93186 0.93073 0.92695 0.85702 0.93474 0.77145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.44 59.85 0.68 1.21 16 2 N -0.37 -3.97 3.97 -67.47 -0.27 -4.23 16 3 C 0.13 1.43 11.32 -16.41 -0.19 1.25 16 4 C -0.31 -4.61 6.12 -104.97 -0.64 -5.26 16 5 C 0.43 7.10 7.02 -31.46 -0.22 6.88 16 6 O -0.45 -7.21 13.79 5.44 0.08 -7.14 16 7 C 0.48 9.63 7.69 -11.65 -0.09 9.54 16 8 O -0.51 -11.58 13.75 5.48 0.08 -11.51 16 9 N -0.57 -11.93 2.98 -173.59 -0.52 -12.45 16 10 C 0.08 1.34 5.96 -3.71 -0.02 1.32 16 11 C -0.13 -2.33 6.08 -26.61 -0.16 -2.49 16 12 C -0.11 -2.29 5.11 -26.69 -0.14 -2.43 16 13 C 0.04 0.99 2.24 -91.88 -0.21 0.78 16 14 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 15 C -0.52 -14.06 8.56 -34.44 -0.29 -14.36 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.88 -25.37 11.39 55.43 0.63 -24.73 16 19 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.11 2.59 5.39 -3.94 -0.02 2.57 16 24 C 0.12 1.87 11.14 -16.92 -0.19 1.68 16 25 N -0.31 -4.44 12.48 30.90 0.39 -4.06 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.12 1.89 4.38 -54.36 -0.24 1.65 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.13 3.46 5.11 -51.93 -0.27 3.19 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.21 3.46 6.31 -52.49 -0.33 3.13 16 LS Contribution 323.91 15.07 4.88 4.88 Total: -1.00 -32.25 323.91 -6.36 -38.62 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.03 Total: 2.14 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.58 Total: 2.31 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.23 Total: -45.47 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.15 Total: -18.65 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.25 -6.36 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118774269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.136 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds