Wall clock time and date at job start Tue Mar 31 2020 06:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34121 * 125.69697 * 2 1 4 4 C 1.38616 * 107.33843 * 179.73589 * 3 2 1 5 5 C 1.46927 * 126.49069 * 180.23766 * 4 3 2 6 6 O 1.21418 * 119.99656 * 0.19874 * 5 4 3 7 7 C 1.49307 * 120.00006 * 180.19942 * 5 4 3 8 8 O 1.21373 * 119.99817 * 8.59943 * 7 5 4 9 9 N 1.34773 * 120.00098 * 188.59857 * 7 5 4 10 10 C 1.46928 * 120.62817 * 8.76552 * 9 7 5 11 11 C 1.53191 * 108.77539 * 126.36710 * 10 9 7 12 12 C 1.53042 * 109.31165 * 54.63505 * 11 10 9 13 13 C 1.53042 * 109.53459 * 298.63222 * 12 11 10 14 14 H 1.08998 * 109.49925 * 301.41380 * 13 12 11 15 15 C 1.50701 * 109.49254 * 181.32078 * 13 12 11 16 16 H 1.07996 * 120.00733 * 359.97438 * 15 13 12 17 17 C 1.37882 * 119.99991 * 180.02562 * 15 13 12 18 18 N 1.31517 * 119.99466 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00481 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46928 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47210 * 119.99407 * 19 17 15 22 22 H 1.48498 * 109.47085 * 239.99845 * 19 17 15 23 23 C 1.46923 * 120.63313 * 188.48120 * 9 7 5 24 24 C 1.41565 * 107.01866 * 0.38348 * 4 3 2 25 25 N 1.30344 * 107.98963 * 359.61227 * 24 4 3 26 26 H 1.09007 * 109.46961 * 269.99752 * 1 2 3 27 27 H 1.08999 * 109.47339 * 29.99684 * 1 2 3 28 28 H 1.08994 * 109.47506 * 150.00052 * 1 2 3 29 29 H 1.08002 * 126.32954 * 359.97438 * 3 2 1 30 30 H 1.09004 * 109.58090 * 246.15278 * 10 9 7 31 31 H 1.09002 * 109.58810 * 6.57633 * 10 9 7 32 32 H 1.09004 * 109.49668 * 174.58357 * 11 10 9 33 33 H 1.08997 * 109.49858 * 294.68194 * 11 10 9 34 34 H 1.09003 * 109.46296 * 58.65425 * 12 11 10 35 35 H 1.09000 * 109.45692 * 178.61113 * 12 11 10 36 36 H 0.97006 * 119.99596 * 179.97438 * 18 17 15 37 37 H 1.09006 * 109.58316 * 353.42214 * 23 9 7 38 38 H 1.09002 * 109.58641 * 113.83939 * 23 9 7 39 39 H 1.07998 * 126.00596 * 179.87094 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2476 1.0892 0.0000 4 6 3.5632 0.6526 0.0061 5 6 4.7645 1.4985 0.0132 6 8 4.6554 2.7078 0.0178 7 6 6.1194 0.8711 0.0148 8 8 6.2338 -0.3263 -0.1469 9 7 7.2153 1.6344 0.1957 10 6 7.0886 3.0464 0.5820 11 6 7.9296 3.2911 1.8388 12 6 9.3682 2.8364 1.5816 13 6 9.3838 1.3372 1.2743 14 1 8.9529 0.7895 2.1125 15 6 10.8039 0.8840 1.0532 16 1 11.6146 1.5939 1.1241 17 6 11.0681 -0.4370 0.7592 18 7 10.0808 -1.3014 0.6723 19 14 12.8283 -0.9988 0.4844 20 1 13.7466 0.1582 0.6367 21 1 13.1763 -2.0422 1.4820 22 1 12.9611 -1.5587 -0.8846 23 6 8.5594 1.0689 0.0166 24 6 3.5301 -0.7626 0.0007 25 7 2.2814 -1.1361 0.0004 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.9143 2.1165 -0.0004 30 1 7.4490 3.6804 -0.2281 31 1 6.0437 3.2757 0.7911 32 1 7.9218 4.3540 2.0805 33 1 7.5125 2.7250 2.6716 34 1 9.7764 3.3853 0.7330 35 1 9.9744 3.0322 2.4660 36 1 10.2666 -2.2307 0.4651 37 1 8.4846 -0.0062 -0.1471 38 1 9.0421 1.5384 -0.8405 39 1 4.3887 -1.4177 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118774269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:35 Heat of formation + Delta-G solvation = 2.089863 kcal Electronic energy + Delta-G solvation = -23299.640901 eV Core-core repulsion = 19823.035221 eV Total energy + Delta-G solvation = -3476.605681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.49849 -41.38304 -39.39705 -38.41586 -35.24438 -34.40031 -33.43526 -31.59529 -31.53192 -28.70813 -27.37850 -26.77534 -24.90328 -23.54600 -22.67852 -21.89151 -21.01570 -20.05608 -18.60028 -18.21284 -17.70969 -17.16257 -16.88906 -16.51227 -16.27984 -15.84781 -15.53818 -15.38444 -14.94091 -14.72392 -14.57116 -14.34588 -14.01630 -13.84187 -13.52059 -13.47663 -13.42928 -12.93726 -12.85909 -12.47525 -12.27606 -12.15385 -11.86069 -11.70300 -11.55523 -11.08944 -10.94821 -10.63329 -10.52821 -10.05590 -9.80009 -9.47775 -8.09290 -6.26320 -0.29981 0.80625 1.40749 1.43065 1.43471 1.46594 1.55095 1.85899 2.38220 2.43485 3.07107 3.19888 3.57923 3.77169 3.94439 4.15366 4.18789 4.20933 4.37451 4.44830 4.55777 4.61577 4.62388 4.72844 4.76247 4.84279 4.91855 5.09171 5.23014 5.25981 5.33111 5.36618 5.51602 5.59597 5.83578 5.87604 5.98184 6.06477 6.34126 6.46437 6.56000 6.85523 7.06403 7.43553 8.94345 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023969 B = 0.004070 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.895159 B = 6878.670305 C = 7858.396756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.355 5.355 3 C 0.162 3.838 4 C -0.344 4.344 5 C 0.441 3.559 6 O -0.441 6.441 7 C 0.464 3.536 8 O -0.548 6.548 9 N -0.583 5.583 10 C 0.076 3.924 11 C -0.127 4.127 12 C -0.106 4.106 13 C 0.038 3.962 14 H -0.012 1.012 15 C -0.535 4.535 16 H 0.062 0.938 17 C 0.010 3.990 18 N -0.913 5.913 19 Si 0.959 3.041 20 H -0.262 1.262 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.120 3.880 24 C 0.104 3.896 25 N -0.331 5.331 26 H 0.098 0.902 27 H 0.129 0.871 28 H 0.096 0.904 29 H 0.235 0.765 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.261 0.739 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.912 9.339 -1.240 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.132 5.132 3 C 0.007 3.993 4 C -0.358 4.358 5 C 0.318 3.682 6 O -0.317 6.317 7 C 0.249 3.751 8 O -0.427 6.427 9 N -0.315 5.315 10 C -0.045 4.045 11 C -0.165 4.165 12 C -0.144 4.144 13 C 0.019 3.981 14 H 0.006 0.994 15 C -0.573 4.573 16 H 0.080 0.920 17 C -0.189 4.189 18 N -0.552 5.552 19 Si 0.784 3.216 20 H -0.186 1.186 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.002 4.002 24 C -0.083 4.083 25 N -0.151 5.151 26 H 0.116 0.884 27 H 0.147 0.853 28 H 0.115 0.885 29 H 0.251 0.749 30 H 0.095 0.905 31 H 0.150 0.850 32 H 0.121 0.879 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -20.933 8.150 -1.361 22.504 hybrid contribution 2.013 -0.447 -0.125 2.065 sum -18.920 7.703 -1.486 20.482 Atomic orbital electron populations 1.22519 0.70197 1.07057 1.05751 1.48963 1.09064 1.03185 1.51943 1.23762 0.88533 0.95396 0.91579 1.20471 0.93760 0.94081 1.27452 1.21230 0.87656 0.87803 0.71484 1.90298 1.88078 1.15663 1.37618 1.21210 0.87348 0.87243 0.79289 1.90659 1.86760 1.15440 1.49799 1.48616 1.06305 1.12634 1.63982 1.22810 1.04743 0.79563 0.97391 1.21946 0.95196 1.02365 0.96999 1.21544 0.96118 0.96081 1.00657 1.18825 0.94092 0.92795 0.92384 0.99388 1.21516 0.93054 0.94294 1.48484 0.91993 1.25888 1.01056 0.97061 0.94902 1.70081 1.32678 1.03528 1.48879 0.85495 0.80247 0.78328 0.77526 1.18600 1.20880 1.20756 1.21809 0.79194 1.00457 0.98717 1.24564 0.95050 0.94991 0.93740 1.77190 1.02202 1.09142 1.26608 0.88396 0.85279 0.88514 0.74857 0.90547 0.85045 0.87920 0.93314 0.92386 0.92829 0.93028 0.89720 0.93904 0.79625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 11.44 127.77 1.46 2.02 16 2 N -0.36 -6.64 3.97 -367.38 -1.46 -8.10 16 3 C 0.16 3.03 11.32 84.43 0.96 3.98 16 4 C -0.34 -9.87 6.12 -20.09 -0.12 -9.99 16 5 C 0.44 14.44 7.02 27.53 0.19 14.63 16 6 O -0.44 -13.19 13.79 -3.46 -0.05 -13.24 16 7 C 0.46 19.51 7.69 87.23 0.67 20.18 16 8 O -0.55 -26.70 13.75 -3.32 -0.05 -26.75 16 9 N -0.58 -24.79 2.98 -821.48 -2.45 -27.24 16 10 C 0.08 2.53 5.96 86.36 0.51 3.04 16 11 C -0.13 -4.16 6.08 30.67 0.19 -3.98 16 12 C -0.11 -4.29 5.11 30.62 0.16 -4.13 16 13 C 0.04 1.97 2.24 -11.61 -0.03 1.94 16 14 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 15 C -0.54 -29.75 8.56 25.60 0.22 -29.53 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.01 0.59 5.30 84.66 0.45 1.04 16 18 N -0.91 -55.35 11.39 21.45 0.24 -55.11 16 19 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 C 0.12 6.08 5.39 86.22 0.46 6.55 16 24 C 0.10 3.33 11.14 85.73 0.95 4.29 16 25 N -0.33 -9.35 12.48 -56.14 -0.70 -10.05 16 26 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 27 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.24 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.13 4.00 4.38 -40.83 -0.18 3.83 16 32 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 37 H 0.08 5.03 5.11 -2.38 -0.01 5.02 16 38 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.19 6.78 6.31 -2.91 -0.02 6.76 16 Total: -1.00 -75.25 323.91 4.55 -70.70 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.90 Total: 13.25 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 6.08 Total: 10.04 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -4.36 Total: -100.49 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.09 Total: -39.98 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -75.25 4.55 -70.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118774269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.791 kcal (2) G-P(sol) polarization free energy of solvation -75.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds