Wall clock time and date at job start Tue Mar 31 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20763 * 119.99956 * 2 1 4 4 C 1.50697 * 120.00378 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47238 * 174.98869 * 4 2 1 6 6 C 1.50701 * 112.84880 * 65.05359 * 5 4 2 7 7 O 1.21303 * 119.99258 * 233.85497 * 6 5 4 8 8 N 1.34773 * 120.00501 * 53.85580 * 6 5 4 9 9 C 1.40590 * 120.00338 * 174.84569 * 8 6 5 10 10 C 1.40649 * 126.07853 * 359.96550 * 9 8 6 11 11 N 1.30913 * 108.38681 * 180.02562 * 10 9 8 12 12 N 1.40073 * 108.40477 * 0.02562 * 11 10 9 13 13 C 1.37316 * 126.06791 * 180.02562 * 12 11 10 14 14 H 1.08007 * 120.00124 * 180.02562 * 13 12 11 15 15 C 1.38989 * 120.00506 * 0.02562 * 13 12 11 16 16 N 1.31302 * 119.99583 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00440 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47191 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47150 * 120.00479 * 17 15 13 20 20 H 1.48501 * 109.47393 * 239.99986 * 17 15 13 21 21 C 1.35684 * 126.08575 * 180.28734 * 9 8 6 22 22 C 1.53787 * 113.68955 * 196.31749 * 5 4 2 23 23 C 1.53775 * 87.07999 * 89.12652 * 22 5 4 24 24 C 1.53781 * 113.61631 * 293.85263 * 5 4 2 25 25 H 1.08994 * 109.46905 * 240.00127 * 1 2 3 26 26 H 1.09003 * 109.46908 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46952 * 119.99887 * 1 2 3 28 28 H 1.09006 * 109.47082 * 54.98427 * 4 2 1 29 29 H 1.09005 * 109.46649 * 294.99221 * 4 2 1 30 30 H 0.97007 * 119.99466 * 354.83770 * 8 6 5 31 31 H 1.08000 * 125.81118 * 0.02562 * 10 9 8 32 32 H 0.96999 * 120.00043 * 179.97438 * 16 15 13 33 33 H 1.07995 * 126.24242 * 359.97438 * 21 9 8 34 34 H 1.08996 * 113.61412 * 203.67758 * 22 5 4 35 35 H 1.09004 * 113.61181 * 334.57945 * 22 5 4 36 36 H 1.08995 * 113.61806 * 270.88156 * 23 22 5 37 37 H 1.09007 * 113.61345 * 139.97981 * 23 22 5 38 38 H 1.08991 * 113.61339 * 25.34956 * 24 5 4 39 39 H 1.09000 * 113.61240 * 156.25295 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3050 -0.0006 5 6 3.7600 -1.0281 -0.1265 6 6 4.3210 -0.2922 1.0630 7 8 4.9400 0.7384 0.9017 8 7 4.1350 -0.7791 2.3059 9 6 4.7488 -0.1535 3.4051 10 6 5.5787 0.9809 3.3554 11 7 5.9598 1.2675 4.5746 12 7 5.3912 0.3310 5.4474 13 6 5.5531 0.2938 6.8105 14 1 5.0670 -0.4763 7.3912 15 6 6.3423 1.2471 7.4429 16 7 6.9328 2.1836 6.7370 17 14 6.5631 1.1961 9.2971 18 1 5.7996 0.0512 9.8551 19 1 8.0036 1.0343 9.6198 20 1 6.0622 2.4620 9.8903 21 6 4.6510 -0.5404 4.7020 22 6 4.5841 -2.2613 -0.5327 23 6 4.3318 -1.8512 -1.9931 24 6 4.1615 -0.4125 -1.4773 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.9316 -1.9142 -0.8426 29 1 2.0662 -1.8372 0.9307 30 1 3.5775 -1.5613 2.4419 31 1 5.8546 1.5234 2.4633 32 1 7.4833 2.8492 7.1784 33 1 4.0883 -1.3827 5.0763 34 1 5.6317 -2.2029 -0.2375 35 1 4.1180 -3.2077 -0.2582 36 1 3.4201 -2.2748 -2.4143 37 1 5.1992 -1.9833 -2.6399 38 1 3.3543 0.1337 -1.9653 39 1 5.0936 0.1513 -1.4403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136435188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:12 Heat of formation + Delta-G solvation = 31.312710 kcal Electronic energy + Delta-G solvation = -23310.565310 eV Core-core repulsion = 19835.226827 eV Total energy + Delta-G solvation = -3475.338483 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.89541 -39.48294 -38.55153 -37.15601 -34.10004 -33.08195 -31.47775 -30.19399 -29.25351 -27.63230 -25.71210 -25.33676 -24.35209 -21.26388 -20.62252 -20.06333 -19.33660 -18.33386 -17.37010 -16.91490 -15.88879 -15.54126 -15.43892 -15.28602 -14.93399 -14.57454 -14.25430 -14.08721 -13.66570 -13.10208 -12.87173 -12.82682 -12.51747 -12.44800 -12.26617 -12.04316 -11.70949 -11.64625 -11.32791 -11.23766 -11.02721 -10.83065 -10.63184 -10.47944 -10.37816 -10.03354 -9.55734 -9.09530 -8.89069 -8.70753 -7.97889 -6.60197 -6.50035 -4.16366 1.98445 2.92698 3.07832 3.12215 3.13847 3.67204 3.74815 3.85870 3.96397 4.42658 4.45457 4.54992 4.69884 4.74197 4.83086 4.97219 5.07689 5.12015 5.13916 5.22971 5.34928 5.39388 5.52781 5.72973 5.78167 5.81548 5.87203 6.02833 6.15931 6.30074 6.40261 6.55817 6.98406 7.06292 7.23204 7.34771 7.54102 7.92872 8.29948 8.39447 8.72612 9.03424 9.45470 9.75095 10.46199 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027428 B = 0.003700 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.621011 B = 7565.453097 C = 7895.418573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.338 3.662 3 O -0.426 6.426 4 C -0.147 4.147 5 C -0.096 4.096 6 C 0.520 3.480 7 O -0.522 6.522 8 N -0.630 5.630 9 C -0.054 4.054 10 C -0.034 4.034 11 N -0.260 5.260 12 N -0.145 5.145 13 C -0.324 4.324 14 H 0.116 0.884 15 C 0.046 3.954 16 N -0.771 5.771 17 Si 0.934 3.066 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.087 4.087 22 C -0.120 4.120 23 C -0.145 4.145 24 C -0.104 4.104 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.391 0.609 31 H 0.174 0.826 32 H 0.273 0.727 33 H 0.144 0.856 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.072 -11.484 -12.775 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.211 3.789 3 O -0.297 6.297 4 C -0.185 4.185 5 C -0.100 4.100 6 C 0.305 3.695 7 O -0.397 6.397 8 N -0.273 5.273 9 C -0.160 4.160 10 C -0.209 4.209 11 N -0.091 5.091 12 N 0.087 4.913 13 C -0.456 4.456 14 H 0.133 0.867 15 C -0.171 4.171 16 N -0.398 5.398 17 Si 0.758 3.242 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.238 4.238 22 C -0.157 4.157 23 C -0.182 4.182 24 C -0.142 4.142 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.224 0.776 31 H 0.191 0.809 32 H 0.084 0.916 33 H 0.161 0.839 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.438 -9.165 -12.136 17.899 hybrid contribution -0.903 -1.207 0.514 1.593 sum -10.342 -10.372 -11.622 18.698 Atomic orbital electron populations 1.22305 0.94520 1.04973 1.04190 1.24525 0.91877 0.90416 0.72072 1.90568 1.71520 1.34533 1.33033 1.21968 0.93274 0.98297 1.04971 1.21901 0.94385 0.98323 0.95362 1.19867 0.81306 0.85282 0.82996 1.90572 1.41315 1.22914 1.84875 1.42522 1.49111 1.30591 1.05039 1.17296 1.10519 1.02354 0.85824 1.24082 1.01727 0.98124 0.97014 1.78244 1.21078 1.12540 0.97275 1.44527 1.26108 1.15089 1.05554 1.19888 1.32178 1.15544 0.77997 0.86691 1.25632 0.95446 0.94961 1.01062 1.70237 1.22764 1.10789 1.35972 0.85778 0.78722 0.78929 0.80775 1.18745 1.19955 1.19955 1.21230 1.09759 1.02438 0.90327 1.22913 1.00631 0.95982 0.96218 1.22894 1.01853 0.97232 0.96223 1.22771 1.02995 0.95754 0.92644 0.89104 0.90060 0.89296 0.87651 0.88022 0.77627 0.80893 0.91594 0.83892 0.89269 0.90699 0.90212 0.91058 0.91416 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.56 10.26 36.01 0.37 -1.19 16 2 C 0.34 3.95 6.68 -29.04 -0.19 3.76 16 3 O -0.43 -7.36 14.87 6.00 0.09 -7.27 16 4 C -0.15 -1.36 4.92 -27.89 -0.14 -1.50 16 5 C -0.10 -1.23 0.61 -154.85 -0.09 -1.32 16 6 C 0.52 9.69 5.50 -10.99 -0.06 9.63 16 7 O -0.52 -12.20 13.09 5.54 0.07 -12.13 16 8 N -0.63 -11.76 5.40 -10.00 -0.05 -11.81 16 9 C -0.05 -1.31 6.90 -83.84 -0.58 -1.89 16 10 C -0.03 -0.94 10.85 -17.03 -0.18 -1.13 16 11 N -0.26 -7.88 10.40 30.80 0.32 -7.56 16 12 N -0.14 -4.10 3.74 -11.41 -0.04 -4.14 16 13 C -0.32 -8.80 10.25 -14.82 -0.15 -8.95 16 14 H 0.12 2.79 7.83 -52.48 -0.41 2.38 16 15 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 16 N -0.77 -22.16 11.81 55.50 0.66 -21.51 16 17 Si 0.93 19.36 29.55 -169.99 -5.02 14.33 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 C -0.09 -2.11 11.49 -16.39 -0.19 -2.30 16 22 C -0.12 -1.23 7.22 -25.92 -0.19 -1.42 16 23 C -0.14 -1.31 7.73 -25.92 -0.20 -1.51 16 24 C -0.10 -1.33 6.37 -25.92 -0.17 -1.49 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.11 0.62 7.32 -51.93 -0.38 0.24 16 29 H 0.10 0.75 7.31 -51.93 -0.38 0.38 16 30 H 0.39 5.61 7.94 -40.82 -0.32 5.28 16 31 H 0.17 4.86 5.94 -52.49 -0.31 4.54 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.14 2.89 8.06 -52.49 -0.42 2.46 16 34 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 35 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.08 0.55 7.61 -51.93 -0.40 0.16 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.86 7.26 -51.93 -0.38 0.48 16 39 H 0.10 1.46 7.50 -51.93 -0.39 1.07 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -37.33 328.27 -5.96 -43.29 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.06 Total: 10.04 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.87 Total: -8.20 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.88 Total: -45.02 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.16 Total: -19.40 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -37.33 -5.96 -43.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136435188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.608 kcal (2) G-P(sol) polarization free energy of solvation -37.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds