Wall clock time and date at job start Tue Mar 31 2020 06:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20763 * 119.99956 * 2 1 4 4 C 1.50697 * 120.00378 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47238 * 174.98869 * 4 2 1 6 6 C 1.50701 * 112.84880 * 65.05359 * 5 4 2 7 7 O 1.21303 * 119.99258 * 233.85497 * 6 5 4 8 8 N 1.34773 * 120.00501 * 53.85580 * 6 5 4 9 9 C 1.40590 * 120.00338 * 174.84569 * 8 6 5 10 10 C 1.40649 * 126.07853 * 359.96550 * 9 8 6 11 11 N 1.30913 * 108.38681 * 180.02562 * 10 9 8 12 12 N 1.40073 * 108.40477 * 0.02562 * 11 10 9 13 13 C 1.37316 * 126.06791 * 180.02562 * 12 11 10 14 14 H 1.08007 * 120.00124 * 180.02562 * 13 12 11 15 15 C 1.38989 * 120.00506 * 0.02562 * 13 12 11 16 16 N 1.31302 * 119.99583 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00440 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47191 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47150 * 120.00479 * 17 15 13 20 20 H 1.48501 * 109.47393 * 239.99986 * 17 15 13 21 21 C 1.35684 * 126.08575 * 180.28734 * 9 8 6 22 22 C 1.53787 * 113.68955 * 196.31749 * 5 4 2 23 23 C 1.53775 * 87.07999 * 89.12652 * 22 5 4 24 24 C 1.53781 * 113.61631 * 293.85263 * 5 4 2 25 25 H 1.08994 * 109.46905 * 240.00127 * 1 2 3 26 26 H 1.09003 * 109.46908 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46952 * 119.99887 * 1 2 3 28 28 H 1.09006 * 109.47082 * 54.98427 * 4 2 1 29 29 H 1.09005 * 109.46649 * 294.99221 * 4 2 1 30 30 H 0.97007 * 119.99466 * 354.83770 * 8 6 5 31 31 H 1.08000 * 125.81118 * 0.02562 * 10 9 8 32 32 H 0.96999 * 120.00043 * 179.97438 * 16 15 13 33 33 H 1.07995 * 126.24242 * 359.97438 * 21 9 8 34 34 H 1.08996 * 113.61412 * 203.67758 * 22 5 4 35 35 H 1.09004 * 113.61181 * 334.57945 * 22 5 4 36 36 H 1.08995 * 113.61806 * 270.88156 * 23 22 5 37 37 H 1.09007 * 113.61345 * 139.97981 * 23 22 5 38 38 H 1.08991 * 113.61339 * 25.34956 * 24 5 4 39 39 H 1.09000 * 113.61240 * 156.25295 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3050 -0.0006 5 6 3.7600 -1.0281 -0.1265 6 6 4.3210 -0.2922 1.0630 7 8 4.9400 0.7384 0.9017 8 7 4.1350 -0.7791 2.3059 9 6 4.7488 -0.1535 3.4051 10 6 5.5787 0.9809 3.3554 11 7 5.9598 1.2675 4.5746 12 7 5.3912 0.3310 5.4474 13 6 5.5531 0.2938 6.8105 14 1 5.0670 -0.4763 7.3912 15 6 6.3423 1.2471 7.4429 16 7 6.9328 2.1836 6.7370 17 14 6.5631 1.1961 9.2971 18 1 5.7996 0.0512 9.8551 19 1 8.0036 1.0343 9.6198 20 1 6.0622 2.4620 9.8903 21 6 4.6510 -0.5404 4.7020 22 6 4.5841 -2.2613 -0.5327 23 6 4.3318 -1.8512 -1.9931 24 6 4.1615 -0.4125 -1.4773 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.9316 -1.9142 -0.8426 29 1 2.0662 -1.8372 0.9307 30 1 3.5775 -1.5613 2.4419 31 1 5.8546 1.5234 2.4633 32 1 7.4833 2.8492 7.1784 33 1 4.0883 -1.3827 5.0763 34 1 5.6317 -2.2029 -0.2375 35 1 4.1180 -3.2077 -0.2582 36 1 3.4201 -2.2748 -2.4143 37 1 5.1992 -1.9833 -2.6399 38 1 3.3543 0.1337 -1.9653 39 1 5.0936 0.1513 -1.4403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136435188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:11 Heat of formation + Delta-G solvation = 3.851790 kcal Electronic energy + Delta-G solvation = -23311.756105 eV Core-core repulsion = 19835.226827 eV Total energy + Delta-G solvation = -3476.529278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.11745 -41.29620 -39.76661 -38.45586 -35.90616 -34.96023 -32.39120 -32.18868 -30.30426 -29.25649 -27.06055 -26.55483 -25.73590 -22.95680 -22.32106 -21.24739 -20.89119 -19.66846 -19.02551 -18.18187 -17.43544 -16.94602 -16.77195 -16.37209 -16.19006 -15.91238 -15.65151 -15.37334 -15.14370 -14.90412 -14.82342 -13.64342 -13.50463 -13.49325 -13.26669 -13.21495 -13.11591 -12.93920 -12.85239 -12.82736 -12.55471 -12.04130 -12.00154 -11.80657 -11.48817 -11.23127 -11.01840 -10.83694 -10.47989 -10.35971 -10.11135 -8.51363 -8.47679 -6.25189 1.14485 1.23126 1.38944 1.57673 1.58773 1.87965 2.06446 2.35006 2.52842 2.92122 3.07585 3.08869 3.50974 3.66035 3.76466 3.91252 4.05440 4.33136 4.42319 4.48947 4.54115 4.63385 4.74220 4.77610 4.81928 4.85459 4.91582 4.99336 5.06752 5.10204 5.17267 5.23536 5.28712 5.29214 5.52074 5.55398 5.95683 6.31879 6.72842 6.73315 6.83431 7.45502 7.52408 7.68578 8.52272 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027428 B = 0.003700 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.621011 B = 7565.453097 C = 7895.418573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.333 3.667 3 O -0.500 6.500 4 C -0.145 4.145 5 C -0.094 4.094 6 C 0.513 3.487 7 O -0.579 6.579 8 N -0.620 5.620 9 C -0.041 4.041 10 C -0.067 4.067 11 N -0.311 5.311 12 N -0.168 5.168 13 C -0.354 4.354 14 H 0.144 0.856 15 C -0.009 4.009 16 N -0.828 5.828 17 Si 1.022 2.978 18 H -0.237 1.237 19 H -0.272 1.272 20 H -0.274 1.274 21 C -0.082 4.082 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.120 4.120 25 H 0.113 0.887 26 H 0.061 0.939 27 H 0.126 0.874 28 H 0.158 0.842 29 H 0.131 0.869 30 H 0.416 0.584 31 H 0.156 0.844 32 H 0.275 0.725 33 H 0.192 0.808 34 H 0.062 0.938 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.955 -15.906 -12.576 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.211 3.789 3 O -0.376 6.376 4 C -0.182 4.182 5 C -0.097 4.097 6 C 0.301 3.699 7 O -0.458 6.458 8 N -0.266 5.266 9 C -0.147 4.147 10 C -0.242 4.242 11 N -0.144 5.144 12 N 0.063 4.937 13 C -0.485 4.485 14 H 0.161 0.839 15 C -0.220 4.220 16 N -0.456 5.456 17 Si 0.841 3.159 18 H -0.160 1.160 19 H -0.198 1.198 20 H -0.199 1.199 21 C -0.232 4.232 22 C -0.151 4.151 23 C -0.157 4.157 24 C -0.158 4.158 25 H 0.132 0.868 26 H 0.080 0.920 27 H 0.144 0.856 28 H 0.176 0.824 29 H 0.149 0.851 30 H 0.254 0.746 31 H 0.173 0.827 32 H 0.085 0.915 33 H 0.209 0.791 34 H 0.081 0.919 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.382 -13.671 -11.976 21.991 hybrid contribution -0.055 0.165 0.315 0.360 sum -12.436 -13.505 -11.662 21.750 Atomic orbital electron populations 1.22338 0.91402 1.04746 1.06967 1.25448 0.93897 0.90348 0.69204 1.90584 1.73129 1.37078 1.36820 1.22181 0.89583 0.97744 1.08649 1.22096 0.97315 0.98763 0.91541 1.21179 0.79820 0.84677 0.84212 1.90554 1.43656 1.25789 1.85768 1.42497 1.49139 1.31128 1.03792 1.17412 1.08838 1.00814 0.87636 1.24025 1.03847 1.00189 0.96132 1.78139 1.23115 1.14703 0.98436 1.44854 1.27026 1.15624 1.06191 1.20709 1.32980 1.16772 0.78020 0.83878 1.26950 0.94253 0.93827 1.06989 1.70434 1.24214 1.12187 1.38789 0.84501 0.78782 0.79618 0.73042 1.15996 1.19765 1.19888 1.21998 1.08677 1.02627 0.89885 1.22928 0.99038 0.96349 0.96757 1.22888 1.03938 0.93313 0.95606 1.22785 1.00970 0.98100 0.93940 0.86825 0.91969 0.85562 0.82427 0.85131 0.74648 0.82702 0.91484 0.79141 0.91890 0.86480 0.86183 0.90587 0.91752 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.40 10.26 71.24 0.73 -1.67 16 2 C 0.33 7.11 6.68 29.10 0.19 7.31 16 3 O -0.50 -17.88 14.87 -1.46 -0.02 -17.90 16 4 C -0.14 -2.02 4.92 29.84 0.15 -1.87 16 5 C -0.09 -2.23 0.61 -52.40 -0.03 -2.26 16 6 C 0.51 19.50 5.50 87.66 0.48 19.98 16 7 O -0.58 -29.28 13.09 -3.10 -0.04 -29.32 16 8 N -0.62 -22.70 5.40 -303.93 -1.64 -24.35 16 9 C -0.04 -2.00 6.90 37.73 0.26 -1.74 16 10 C -0.07 -3.98 10.85 85.42 0.93 -3.06 16 11 N -0.31 -19.95 10.40 -56.46 -0.59 -20.53 16 12 N -0.17 -9.68 3.74 -190.02 -0.71 -10.39 16 13 C -0.35 -19.24 10.25 84.01 0.86 -18.38 16 14 H 0.14 6.67 7.83 -2.91 -0.02 6.65 16 15 C -0.01 -0.49 5.50 84.95 0.47 -0.02 16 16 N -0.83 -49.71 11.81 21.66 0.26 -49.46 16 17 Si 1.02 39.53 29.55 68.60 2.03 41.56 16 18 H -0.24 -8.09 7.11 99.48 0.71 -7.39 16 19 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 20 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 21 C -0.08 -3.92 11.49 83.38 0.96 -2.96 16 22 C -0.11 -1.95 7.22 31.12 0.22 -1.72 16 23 C -0.12 -1.75 7.73 31.12 0.24 -1.51 16 24 C -0.12 -3.05 6.37 31.12 0.20 -2.85 16 25 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 27 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.16 0.66 7.32 -2.38 -0.02 0.64 16 29 H 0.13 1.14 7.31 -2.38 -0.02 1.13 16 30 H 0.42 10.65 7.94 -92.70 -0.74 9.91 16 31 H 0.16 9.60 5.94 -2.91 -0.02 9.59 16 32 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.19 7.03 8.06 -2.91 -0.02 7.01 16 34 H 0.06 1.43 8.09 -2.39 -0.02 1.41 16 35 H 0.12 1.09 8.10 -2.38 -0.02 1.07 16 36 H 0.12 0.86 7.61 -2.39 -0.02 0.85 16 37 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.06 1.64 7.26 -2.39 -0.02 1.62 16 39 H 0.05 1.80 7.50 -2.39 -0.02 1.78 16 Total: -1.00 -93.63 328.27 5.29 -88.35 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: 0.35 Total: 32.81 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 5.66 Total: -10.77 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -2.68 Total: -104.73 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -0.06 Total: -47.22 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -93.63 5.29 -88.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136435188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.199 kcal (2) G-P(sol) polarization free energy of solvation -93.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds