Wall clock time and date at job start Tue Mar 31 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.09004 * 109.63605 * 299.72095 * 6 4 3 8 8 C 1.53307 * 109.64686 * 179.29609 * 6 4 3 9 9 C 1.52780 * 108.54685 * 170.43497 * 8 6 4 10 10 C 1.50591 * 110.47696 * 51.29821 * 9 8 6 11 11 N 1.32585 * 118.22226 * 162.16664 * 10 9 8 12 12 N 1.28094 * 122.69564 * 179.76621 * 11 10 9 13 13 C 1.32620 * 122.02426 * 359.97219 * 12 11 10 14 14 N 1.38873 * 120.30558 * 180.09005 * 13 12 11 15 15 C 1.36905 * 120.00476 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99601 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99997 * 180.02562 * 15 14 13 18 18 N 1.31565 * 120.00340 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99826 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47369 * 59.99405 * 19 17 15 21 21 H 1.48497 * 109.47214 * 179.97438 * 19 17 15 22 22 H 1.48512 * 109.46815 * 299.99639 * 19 17 15 23 23 C 1.39435 * 119.39363 * 0.11148 * 13 12 11 24 24 C 1.38020 * 122.29177 * 342.09869 * 10 9 8 25 25 C 1.50369 * 123.04965 * 0.43553 * 24 10 9 26 26 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 27 27 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 28 28 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 30 30 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 31 31 H 1.08995 * 109.62305 * 290.15274 * 8 6 4 32 32 H 1.09001 * 109.62196 * 50.71660 * 8 6 4 33 33 H 1.09001 * 109.30085 * 171.61378 * 9 8 6 34 34 H 1.09005 * 109.29882 * 290.99142 * 9 8 6 35 35 H 0.97002 * 120.00040 * 359.97438 * 14 13 12 36 36 H 0.96994 * 119.99876 * 179.97438 * 18 17 15 37 37 H 1.08005 * 120.96282 * 180.02562 * 23 13 12 38 38 H 1.09005 * 109.50466 * 222.55278 * 25 24 10 39 39 H 1.08999 * 109.15806 * 103.12863 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.5894 3.4748 -0.8830 8 6 5.4518 2.8617 0.0214 9 6 6.0101 4.2644 -0.2133 10 6 5.3793 5.2482 0.7365 11 7 5.9839 6.4129 0.9257 12 7 5.5209 7.3135 1.7102 13 6 4.3963 7.1418 2.3918 14 7 3.9258 8.1432 3.2311 15 6 2.7639 7.9597 3.9315 16 1 2.2129 7.0362 3.8308 17 6 2.2934 8.9609 4.7701 18 7 2.9643 10.0860 4.8923 19 14 0.7083 8.7101 5.7262 20 1 0.8496 7.5315 6.6186 21 1 0.4265 9.9179 6.5429 22 1 -0.4111 8.4813 4.7775 23 6 3.6908 5.9466 2.2583 24 6 4.2037 4.9763 1.4065 25 6 3.4562 3.6800 1.2581 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 5.7900 2.4902 0.9887 32 1 5.7935 2.1945 -0.7699 33 1 7.0888 4.2536 -0.0572 34 1 5.8006 4.5686 -1.2388 35 1 4.4205 8.9727 3.3212 36 1 2.6353 10.7856 5.4779 37 1 2.7720 5.7801 2.8010 38 1 2.3879 3.8826 1.1816 39 1 3.6402 3.0586 2.1345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155537613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:27 Heat of formation + Delta-G solvation = -48.094709 kcal Electronic energy + Delta-G solvation = -22685.475038 eV Core-core repulsion = 19206.693190 eV Total energy + Delta-G solvation = -3478.781847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.87165 -39.96759 -37.33740 -36.41441 -35.50231 -32.70596 -32.04565 -31.73382 -30.67823 -28.40766 -25.55244 -25.15306 -23.61085 -22.64048 -22.26721 -21.15886 -19.59831 -18.28314 -17.75296 -17.03002 -16.75777 -16.23715 -15.87006 -15.31023 -14.67821 -14.33636 -14.15383 -13.89833 -13.73164 -13.62476 -13.41895 -13.05656 -12.64711 -12.29705 -12.23255 -11.98753 -11.89612 -11.82342 -11.63582 -11.47264 -11.10358 -11.00105 -10.72118 -10.68641 -10.56856 -10.49269 -10.40016 -9.87024 -9.09874 -8.85089 -8.46962 -7.34041 -6.79453 -4.01830 1.87994 2.10505 2.18399 2.53210 3.03917 3.04304 3.06158 3.83309 4.39162 4.44788 4.60106 4.67311 4.73243 4.76481 4.85969 5.00622 5.00856 5.07987 5.15559 5.32322 5.44986 5.51429 5.52227 5.68100 5.71994 5.74727 5.85255 5.95865 6.03704 6.07219 6.12649 6.27510 6.36545 6.47390 6.74035 6.95829 7.10854 7.23188 7.56032 7.65331 8.49388 9.01193 9.21151 10.07115 10.36083 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.004132 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.693691 B = 6773.943039 C = 8539.576462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.356 6.356 4 C 0.470 3.530 5 O -0.509 6.509 6 C -0.077 4.077 7 H 0.114 0.886 8 C -0.099 4.099 9 C -0.038 4.038 10 C -0.066 4.066 11 N -0.192 5.192 12 N -0.342 5.342 13 C 0.292 3.708 14 N -0.514 5.514 15 C -0.309 4.309 16 H 0.105 0.895 17 C 0.029 3.971 18 N -0.875 5.875 19 Si 0.938 3.062 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.200 4.200 24 C -0.037 4.037 25 C -0.063 4.063 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.408 0.592 36 H 0.281 0.719 37 H 0.135 0.865 38 H 0.089 0.911 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 -15.779 -7.629 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.273 6.273 4 C 0.313 3.687 5 O -0.396 6.396 6 C -0.097 4.097 7 H 0.131 0.869 8 C -0.137 4.137 9 C -0.077 4.077 10 C -0.216 4.216 11 N -0.039 5.039 12 N -0.203 5.203 13 C 0.046 3.954 14 N -0.120 5.120 15 C -0.439 4.439 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.510 5.510 19 Si 0.763 3.237 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.236 4.236 24 C -0.046 4.046 25 C -0.100 4.100 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.244 0.756 36 H 0.091 0.909 37 H 0.152 0.848 38 H 0.107 0.893 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.398 -14.791 -7.595 16.970 hybrid contribution -1.888 -0.729 1.013 2.263 sum -5.286 -15.519 -6.582 17.666 Atomic orbital electron populations 1.21808 0.92629 1.02866 1.03730 1.23017 0.95422 0.80436 1.02482 1.86548 1.24717 1.32149 1.83863 1.23862 0.80385 0.92718 0.71746 1.90648 1.60457 1.43149 1.45386 1.21148 0.97335 0.89081 1.02092 0.86859 1.21482 0.91108 0.97516 1.03608 1.19863 0.99978 0.90555 0.97303 1.21414 0.96977 0.97201 1.05975 1.72459 1.24914 0.98339 1.08179 1.72720 1.12683 1.23882 1.11056 1.19827 0.92629 0.89597 0.93377 1.40705 1.21692 1.14146 1.35491 1.19717 0.99397 1.03423 1.21405 0.87745 1.25403 1.00006 0.94749 0.97612 1.69684 1.39003 1.05589 1.36747 0.85801 0.80313 0.78276 0.79307 1.19447 1.20395 1.19413 1.21393 1.03443 0.94146 1.04597 1.19835 0.94542 0.94791 0.95473 1.20280 1.00269 0.93462 0.96037 0.91300 0.91431 0.90361 0.91345 0.91268 0.90844 0.90350 0.90311 0.91256 0.75564 0.90890 0.84753 0.89268 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 37.15 0.38 -0.65 16 2 C 0.06 0.55 6.19 37.15 0.23 0.78 16 3 O -0.36 -4.12 10.15 -39.26 -0.40 -4.52 16 4 C 0.47 5.93 7.24 36.00 0.26 6.19 16 5 O -0.51 -7.45 15.60 -18.76 -0.29 -7.74 16 6 C -0.08 -0.94 2.65 -91.70 -0.24 -1.19 16 7 H 0.11 1.25 8.10 -51.93 -0.42 0.83 16 8 C -0.10 -1.23 4.70 -26.69 -0.13 -1.35 16 9 C -0.04 -0.53 5.95 -28.05 -0.17 -0.70 16 10 C -0.07 -1.21 6.69 -82.40 -0.55 -1.77 16 11 N -0.19 -4.20 11.37 33.56 0.38 -3.82 16 12 N -0.34 -8.21 11.54 31.21 0.36 -7.85 16 13 C 0.29 6.88 7.72 -154.85 -1.20 5.69 16 14 N -0.51 -12.77 5.44 -11.07 -0.06 -12.83 16 15 C -0.31 -7.57 9.56 -15.07 -0.14 -7.72 16 16 H 0.10 2.38 5.72 -52.49 -0.30 2.08 16 17 C 0.03 0.70 5.50 -17.45 -0.10 0.60 16 18 N -0.88 -22.53 13.05 55.49 0.72 -21.81 16 19 Si 0.94 18.63 29.55 -169.99 -5.02 13.60 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 23 C -0.20 -4.13 9.05 -38.88 -0.35 -4.48 16 24 C -0.04 -0.66 5.74 -104.61 -0.60 -1.26 16 25 C -0.06 -0.86 4.98 -28.13 -0.14 -1.00 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 32 H 0.08 0.88 7.81 -51.93 -0.41 0.48 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.41 10.55 8.02 -40.82 -0.33 10.22 16 36 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.13 2.61 6.06 -52.48 -0.32 2.29 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -28.68 329.61 -7.21 -35.89 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.13 Total: 10.94 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.74 Total: -6.84 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 1.41 Total: -46.30 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.69 Total: -12.26 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.68 -7.21 -35.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.205 kcal (2) G-P(sol) polarization free energy of solvation -28.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds