Wall clock time and date at job start Tue Mar 31 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.09004 * 109.63605 * 299.72095 * 6 4 3 8 8 C 1.53307 * 109.64686 * 179.29609 * 6 4 3 9 9 C 1.52780 * 108.54685 * 170.43497 * 8 6 4 10 10 C 1.50591 * 110.47696 * 51.29821 * 9 8 6 11 11 N 1.32585 * 118.22226 * 162.16664 * 10 9 8 12 12 N 1.28094 * 122.69564 * 179.76621 * 11 10 9 13 13 C 1.32620 * 122.02426 * 359.97219 * 12 11 10 14 14 N 1.38873 * 120.30558 * 180.09005 * 13 12 11 15 15 C 1.36905 * 120.00476 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99601 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99997 * 180.02562 * 15 14 13 18 18 N 1.31565 * 120.00340 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99826 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47369 * 59.99405 * 19 17 15 21 21 H 1.48497 * 109.47214 * 179.97438 * 19 17 15 22 22 H 1.48512 * 109.46815 * 299.99639 * 19 17 15 23 23 C 1.39435 * 119.39363 * 0.11148 * 13 12 11 24 24 C 1.38020 * 122.29177 * 342.09869 * 10 9 8 25 25 C 1.50369 * 123.04965 * 0.43553 * 24 10 9 26 26 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 27 27 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 28 28 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 30 30 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 31 31 H 1.08995 * 109.62305 * 290.15274 * 8 6 4 32 32 H 1.09001 * 109.62196 * 50.71660 * 8 6 4 33 33 H 1.09001 * 109.30085 * 171.61378 * 9 8 6 34 34 H 1.09005 * 109.29882 * 290.99142 * 9 8 6 35 35 H 0.97002 * 120.00040 * 359.97438 * 14 13 12 36 36 H 0.96994 * 119.99876 * 179.97438 * 18 17 15 37 37 H 1.08005 * 120.96282 * 180.02562 * 23 13 12 38 38 H 1.09005 * 109.50466 * 222.55278 * 25 24 10 39 39 H 1.08999 * 109.15806 * 103.12863 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.5894 3.4748 -0.8830 8 6 5.4518 2.8617 0.0214 9 6 6.0101 4.2644 -0.2133 10 6 5.3793 5.2482 0.7365 11 7 5.9839 6.4129 0.9257 12 7 5.5209 7.3135 1.7102 13 6 4.3963 7.1418 2.3918 14 7 3.9258 8.1432 3.2311 15 6 2.7639 7.9597 3.9315 16 1 2.2129 7.0362 3.8308 17 6 2.2934 8.9609 4.7701 18 7 2.9643 10.0860 4.8923 19 14 0.7083 8.7101 5.7262 20 1 0.8496 7.5315 6.6186 21 1 0.4265 9.9179 6.5429 22 1 -0.4111 8.4813 4.7775 23 6 3.6908 5.9466 2.2583 24 6 4.2037 4.9763 1.4065 25 6 3.4562 3.6800 1.2581 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 5.7900 2.4902 0.9887 32 1 5.7935 2.1945 -0.7699 33 1 7.0888 4.2536 -0.0572 34 1 5.8006 4.5686 -1.2388 35 1 4.4205 8.9727 3.3212 36 1 2.6353 10.7856 5.4779 37 1 2.7720 5.7801 2.8010 38 1 2.3879 3.8826 1.1816 39 1 3.6402 3.0586 2.1345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:26 Heat of formation + Delta-G solvation = -64.086035 kcal Electronic energy + Delta-G solvation = -22686.168473 eV Core-core repulsion = 19206.693190 eV Total energy + Delta-G solvation = -3479.475283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.05195 -41.36548 -38.52870 -37.63816 -37.02984 -34.35236 -33.24621 -32.85021 -31.92069 -29.94406 -27.06984 -26.58755 -24.74690 -23.79586 -23.60150 -22.32677 -20.78239 -19.95737 -18.82418 -18.49105 -17.90566 -17.43131 -17.15103 -16.65705 -16.25933 -15.83993 -15.43490 -15.15919 -14.99336 -14.70763 -14.61181 -13.97851 -13.71891 -13.61481 -13.51480 -13.43110 -13.00456 -12.87210 -12.80120 -12.47774 -12.44684 -12.33038 -12.32406 -12.10900 -11.85811 -11.48285 -11.42538 -11.29998 -10.83612 -10.37246 -10.13243 -9.11605 -8.56511 -5.88729 0.24133 0.55843 1.13678 1.42847 1.50832 1.54885 1.67420 2.20325 2.75694 2.92489 3.24750 3.42103 3.65352 3.71765 3.79240 3.94230 4.04256 4.06088 4.12098 4.27913 4.39083 4.40898 4.50451 4.52290 4.64088 4.71652 4.85028 4.90613 4.96289 5.05596 5.09279 5.15444 5.19543 5.24879 5.30273 5.48842 5.49732 5.62312 5.85230 6.67413 6.72096 7.25098 7.37757 8.35838 8.61606 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.004132 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.693691 B = 6773.943039 C = 8539.576462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.360 6.360 4 C 0.477 3.523 5 O -0.530 6.530 6 C -0.073 4.073 7 H 0.131 0.869 8 C -0.092 4.092 9 C -0.037 4.037 10 C -0.046 4.046 11 N -0.223 5.223 12 N -0.380 5.380 13 C 0.284 3.716 14 N -0.543 5.543 15 C -0.327 4.327 16 H 0.117 0.883 17 C -0.021 4.021 18 N -0.922 5.922 19 Si 1.007 2.993 20 H -0.261 1.261 21 H -0.282 1.282 22 H -0.260 1.260 23 C -0.209 4.209 24 C -0.025 4.025 25 C -0.059 4.059 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.395 0.605 36 H 0.280 0.720 37 H 0.146 0.854 38 H 0.106 0.894 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.939 -18.906 -8.847 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.321 3.679 5 O -0.420 6.420 6 C -0.092 4.092 7 H 0.149 0.851 8 C -0.130 4.130 9 C -0.076 4.076 10 C -0.198 4.198 11 N -0.066 5.066 12 N -0.240 5.240 13 C 0.039 3.961 14 N -0.151 5.151 15 C -0.456 4.456 16 H 0.134 0.866 17 C -0.222 4.222 18 N -0.559 5.559 19 Si 0.829 3.171 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.184 1.184 23 C -0.244 4.244 24 C -0.035 4.035 25 C -0.096 4.096 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.229 0.771 36 H 0.089 0.911 37 H 0.164 0.836 38 H 0.125 0.875 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.779 -17.956 -8.859 20.585 hybrid contribution -1.317 -0.033 1.152 1.749 sum -6.095 -17.989 -7.707 20.498 Atomic orbital electron populations 1.21830 0.90809 1.04263 1.03654 1.23291 0.96864 0.79253 1.02690 1.86541 1.23992 1.33701 1.83415 1.23751 0.80636 0.92340 0.71143 1.90650 1.61015 1.43798 1.46519 1.21113 0.97141 0.89065 1.01913 0.85120 1.21432 0.91225 0.96338 1.04052 1.20031 1.00205 0.90303 0.97072 1.22318 0.96372 0.96501 1.04610 1.72432 1.25887 0.99546 1.08782 1.72665 1.13524 1.25442 1.12332 1.20199 0.92804 0.90288 0.92840 1.40729 1.22564 1.14277 1.37575 1.20090 0.99628 1.04115 1.21814 0.86575 1.26356 1.03133 0.94289 0.98450 1.69810 1.41034 1.06700 1.38377 0.84770 0.76394 0.78077 0.77908 1.18604 1.20680 1.18411 1.21671 1.03778 0.93706 1.05224 1.20280 0.94056 0.95816 0.93369 1.20322 1.00616 0.91260 0.97425 0.91553 0.91279 0.88267 0.90944 0.91331 0.91446 0.88488 0.89572 0.89041 0.77144 0.91084 0.83633 0.87548 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.29 71.98 0.74 -0.82 16 2 C 0.05 0.81 6.19 71.98 0.45 1.25 16 3 O -0.36 -7.16 10.15 -51.41 -0.52 -7.68 16 4 C 0.48 10.38 7.24 71.23 0.52 10.90 16 5 O -0.53 -13.89 15.60 21.94 0.34 -13.55 16 6 C -0.07 -1.50 2.65 -11.49 -0.03 -1.53 16 7 H 0.13 2.28 8.10 -2.38 -0.02 2.26 16 8 C -0.09 -1.93 4.70 30.62 0.14 -1.79 16 9 C -0.04 -0.92 5.95 29.74 0.18 -0.75 16 10 C -0.05 -1.61 6.69 42.36 0.28 -1.32 16 11 N -0.22 -9.68 11.37 -47.74 -0.54 -10.22 16 12 N -0.38 -18.70 11.54 -55.17 -0.64 -19.34 16 13 C 0.28 13.69 7.72 133.11 1.03 14.72 16 14 N -0.54 -28.17 5.44 -188.93 -1.03 -29.19 16 15 C -0.33 -16.42 9.56 84.04 0.80 -15.62 16 16 H 0.12 5.31 5.72 -2.91 -0.02 5.30 16 17 C -0.02 -1.06 5.50 84.87 0.47 -0.59 16 18 N -0.92 -49.57 13.05 21.65 0.28 -49.28 16 19 Si 1.01 38.46 29.55 68.60 2.03 40.48 16 20 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 21 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 23 C -0.21 -8.43 9.05 22.72 0.21 -8.22 16 24 C -0.03 -0.84 5.74 -19.85 -0.11 -0.96 16 25 C -0.06 -1.39 4.98 29.69 0.15 -1.24 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 30 H 0.07 1.07 8.13 -2.38 -0.02 1.05 16 31 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 32 H 0.10 1.77 7.81 -2.39 -0.02 1.75 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.39 21.79 8.02 -92.71 -0.74 21.05 16 36 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.15 5.48 6.06 -2.91 -0.02 5.46 16 38 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 39 H 0.09 2.07 8.11 -2.39 -0.02 2.05 16 Total: -1.00 -64.25 329.61 5.08 -59.18 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.34 Total: 35.58 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 4.81 Total: -5.98 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -1.92 Total: -108.04 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.18 Total: -21.23 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.48 kcal Total: -64.25 5.08 -59.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.909 kcal (2) G-P(sol) polarization free energy of solvation -64.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds