Wall clock time and date at job start Tue Mar 31 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45193 * 109.47296 * 2 1 4 4 C 1.34232 * 117.00286 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99857 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99929 * 180.02562 * 4 3 2 7 7 C 1.50696 * 109.46976 * 185.08117 * 6 4 3 8 8 N 1.29299 * 120.00313 * 103.20000 * 7 6 4 9 9 N 1.37296 * 120.00033 * 283.20448 * 7 6 4 10 10 C 1.38418 * 119.99814 * 179.97438 * 9 7 6 11 11 N 1.32230 * 119.90346 * 0.02562 * 10 9 7 12 12 C 1.31946 * 121.87812 * 180.02562 * 11 10 9 13 13 C 1.50697 * 119.28076 * 179.97438 * 12 11 10 14 14 C 1.38709 * 121.43952 * 0.24982 * 12 11 10 15 15 C 1.37989 * 119.61248 * 359.51706 * 14 12 11 16 16 C 1.41030 * 118.27403 * 0.46801 * 15 14 12 17 17 C 1.41031 * 120.70367 * 179.73176 * 16 15 14 18 18 H 1.07994 * 120.00160 * 208.88257 * 17 16 15 19 19 C 1.39964 * 119.99869 * 28.87378 * 17 16 15 20 20 N 1.30852 * 119.99849 * 10.86776 * 19 17 16 21 21 Si 1.86796 * 119.99985 * 190.86339 * 19 17 16 22 22 H 1.48498 * 109.46915 * 90.00016 * 21 19 17 23 23 H 1.48498 * 109.46975 * 210.00631 * 21 19 17 24 24 H 1.48503 * 109.47197 * 330.00185 * 21 19 17 25 25 H 1.08994 * 109.46907 * 299.99833 * 1 2 3 26 26 H 1.08996 * 109.46774 * 60.00297 * 1 2 3 27 27 H 1.09001 * 109.47019 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47305 * 239.99697 * 2 1 3 29 29 H 1.09004 * 109.47187 * 120.00202 * 2 1 3 30 30 H 1.08991 * 109.47615 * 65.08115 * 6 4 3 31 31 H 1.09001 * 109.46757 * 305.07640 * 6 4 3 32 32 H 0.97003 * 119.99528 * 354.95801 * 8 7 6 33 33 H 0.97000 * 120.00198 * 359.97438 * 9 7 6 34 34 H 1.08995 * 109.47198 * 89.99405 * 13 12 11 35 35 H 1.08997 * 109.47068 * 210.00025 * 13 12 11 36 36 H 1.09002 * 109.47021 * 329.99699 * 13 12 11 37 37 H 1.07995 * 120.18902 * 179.71969 * 14 12 11 38 38 H 1.08000 * 120.86120 * 180.20396 * 15 14 12 39 39 H 0.96998 * 120.00238 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4204 2.8607 -0.1266 8 7 5.9878 3.1206 -1.2590 9 7 6.1843 2.5149 0.9605 10 6 7.5618 2.4440 0.8441 11 7 8.1399 2.7102 -0.3150 12 6 9.4491 2.6541 -0.4698 13 6 10.0460 2.9686 -1.8173 14 6 10.2874 2.3064 0.5791 15 6 9.7485 2.0212 1.8170 16 6 8.3477 2.0856 1.9666 17 6 7.7421 1.7986 3.2076 18 1 6.7405 1.3959 3.2394 19 6 8.4392 2.0356 4.3979 20 7 9.5574 2.7149 4.3770 21 14 7.7732 1.3824 6.0162 22 1 8.3147 0.0215 6.2610 23 1 8.1845 2.2851 7.1212 24 1 6.2908 1.3212 5.9529 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.6600 3.4381 0.9323 31 1 3.5134 3.4993 -0.8405 32 1 5.4457 3.2932 -2.0447 33 1 5.7588 2.3202 1.8102 34 1 10.2635 4.0349 -1.8784 35 1 10.9677 2.4016 -1.9476 36 1 9.3384 2.6967 -2.6006 37 1 11.3559 2.2624 0.4286 38 1 10.3827 1.7515 2.6485 39 1 10.0404 2.8795 5.2019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155701135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:38 Heat of formation + Delta-G solvation = -24.685242 kcal Electronic energy + Delta-G solvation = -22897.547423 eV Core-core repulsion = 19419.780686 eV Total energy + Delta-G solvation = -3477.766736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.51701 -38.82307 -37.12344 -36.09621 -34.15026 -32.73782 -31.92182 -30.62445 -29.73596 -29.08386 -27.56816 -24.23002 -23.57082 -22.05997 -21.20218 -20.65198 -19.28551 -17.75456 -17.26019 -16.82411 -16.66733 -16.15666 -15.57673 -14.99061 -14.47173 -14.02473 -13.79064 -13.69076 -13.61091 -13.18157 -12.97838 -12.78893 -12.44190 -12.18659 -11.95422 -11.79329 -11.73822 -11.51761 -11.38131 -11.32058 -10.79804 -10.76905 -10.64100 -10.49566 -10.33974 -9.82247 -9.29947 -8.69912 -8.53695 -7.86145 -7.43777 -6.81089 -6.58045 -4.30785 2.22150 2.34196 2.69787 2.99066 3.05711 3.07173 3.25796 3.63405 3.90586 3.95792 4.65096 4.69823 4.73645 4.78542 4.89139 5.05793 5.09246 5.39623 5.51398 5.55768 5.72782 5.73430 5.90732 6.25888 6.37058 6.39128 6.51203 6.59040 6.70607 6.78462 7.05101 7.11417 7.25360 7.69567 7.74304 7.75744 7.99105 8.09900 8.30852 8.61128 8.76299 8.91315 9.23553 9.92971 10.20767 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011809 B = 0.005402 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.485909 B = 5181.786164 C = 7170.671603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.460 3.540 5 O -0.483 6.483 6 C -0.122 4.122 7 C 0.401 3.599 8 N -0.687 5.687 9 N -0.612 5.612 10 C 0.262 3.738 11 N -0.437 5.437 12 C 0.020 3.980 13 C -0.071 4.071 14 C -0.175 4.175 15 C -0.118 4.118 16 C 0.046 3.954 17 C -0.463 4.463 18 H 0.074 0.926 19 C 0.076 3.924 20 N -0.801 5.801 21 Si 0.910 3.090 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.264 1.264 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.321 0.679 33 H 0.416 0.584 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.128 0.872 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.059 -1.272 -3.896 13.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.300 3.700 5 O -0.369 6.369 6 C -0.165 4.165 7 C 0.115 3.885 8 N -0.314 5.314 9 N -0.244 5.244 10 C 0.028 3.972 11 N -0.151 5.151 12 C -0.118 4.118 13 C -0.129 4.129 14 C -0.197 4.197 15 C -0.145 4.145 16 C 0.039 3.961 17 C -0.494 4.494 18 H 0.092 0.908 19 C -0.141 4.141 20 N -0.428 5.428 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.188 1.188 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.253 0.747 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.146 0.854 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.129 -1.175 -4.845 13.114 hybrid contribution -0.963 -0.640 1.857 2.187 sum -13.092 -1.814 -2.989 13.551 Atomic orbital electron populations 1.21799 0.92713 1.02894 1.03432 1.23016 0.95194 0.80333 1.02798 1.86489 1.24681 1.32390 1.84484 1.23515 0.80540 0.92549 0.73351 1.90786 1.60047 1.42675 1.43344 1.21665 0.95122 0.92217 1.07502 1.20745 0.84930 0.93155 0.89657 1.69640 1.39355 1.23586 0.98815 1.41106 1.03778 1.69112 1.10409 1.18329 0.83106 1.04387 0.91379 1.66819 1.10723 1.14699 1.22813 1.20262 0.88677 1.07672 0.95232 1.20251 0.98630 0.99752 0.94244 1.21429 0.98398 1.05115 0.94713 1.21396 0.94785 1.02588 0.95732 1.17934 0.92325 0.93902 0.91908 1.19170 1.01533 1.38755 0.89950 0.90785 1.25799 0.94425 0.92876 1.00992 1.69776 1.14057 1.29096 1.29845 0.86285 0.80141 0.79497 0.80603 1.19394 1.20333 1.18769 0.91456 0.91568 0.90318 0.91274 0.91073 0.86030 0.86159 0.86394 0.74662 0.93333 0.93258 0.92397 0.88614 0.85447 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.63 6.19 37.16 0.23 0.86 16 3 O -0.36 -4.47 10.22 -39.26 -0.40 -4.87 16 4 C 0.46 6.71 7.94 36.01 0.29 6.99 16 5 O -0.48 -9.01 15.78 -18.75 -0.30 -9.31 16 6 C -0.12 -1.58 6.19 -29.04 -0.18 -1.76 16 7 C 0.40 7.52 6.41 -154.30 -0.99 6.53 16 8 N -0.69 -13.90 11.34 32.94 0.37 -13.53 16 9 N -0.61 -13.23 5.38 -8.99 -0.05 -13.27 16 10 C 0.26 6.70 7.48 -154.77 -1.16 5.54 16 11 N -0.44 -11.21 7.57 -8.05 -0.06 -11.27 16 12 C 0.02 0.47 6.79 -82.37 -0.56 -0.09 16 13 C -0.07 -1.40 10.15 36.00 0.37 -1.03 16 14 C -0.17 -4.24 9.69 -39.50 -0.38 -4.62 16 15 C -0.12 -3.11 8.76 -38.62 -0.34 -3.44 16 16 C 0.05 1.22 5.57 -106.48 -0.59 0.63 16 17 C -0.46 -11.74 8.45 -37.88 -0.32 -12.06 16 18 H 0.07 1.77 6.80 -52.49 -0.36 1.41 16 19 C 0.08 1.84 5.27 -17.32 -0.09 1.75 16 20 N -0.80 -20.30 10.90 55.55 0.61 -19.69 16 21 Si 0.91 18.23 29.57 -169.99 -5.03 13.20 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 30 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.12 1.20 7.98 -51.93 -0.41 0.79 16 32 H 0.32 5.46 8.64 -40.82 -0.35 5.11 16 33 H 0.42 8.31 7.00 -40.82 -0.29 8.02 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 38 H 0.13 3.39 6.34 -52.49 -0.33 3.06 16 39 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -32.31 337.58 -8.21 -40.53 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -5.10 Total: 14.53 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -3.35 Total: -1.41 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.87 Total: -57.77 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.70 Total: -14.17 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.31 -8.21 -40.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155701135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.843 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds