Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45193 * 109.47296 * 2 1 4 4 C 1.34232 * 117.00286 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99857 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99929 * 180.02562 * 4 3 2 7 7 C 1.50696 * 109.46976 * 185.08117 * 6 4 3 8 8 N 1.29299 * 120.00313 * 103.20000 * 7 6 4 9 9 N 1.37296 * 120.00033 * 283.20448 * 7 6 4 10 10 C 1.38418 * 119.99814 * 179.97438 * 9 7 6 11 11 N 1.32230 * 119.90346 * 0.02562 * 10 9 7 12 12 C 1.31946 * 121.87812 * 180.02562 * 11 10 9 13 13 C 1.50697 * 119.28076 * 179.97438 * 12 11 10 14 14 C 1.38709 * 121.43952 * 0.24982 * 12 11 10 15 15 C 1.37989 * 119.61248 * 359.51706 * 14 12 11 16 16 C 1.41030 * 118.27403 * 0.46801 * 15 14 12 17 17 C 1.41031 * 120.70367 * 179.73176 * 16 15 14 18 18 H 1.07994 * 120.00160 * 208.88257 * 17 16 15 19 19 C 1.39964 * 119.99869 * 28.87378 * 17 16 15 20 20 N 1.30852 * 119.99849 * 10.86776 * 19 17 16 21 21 Si 1.86796 * 119.99985 * 190.86339 * 19 17 16 22 22 H 1.48498 * 109.46915 * 90.00016 * 21 19 17 23 23 H 1.48498 * 109.46975 * 210.00631 * 21 19 17 24 24 H 1.48503 * 109.47197 * 330.00185 * 21 19 17 25 25 H 1.08994 * 109.46907 * 299.99833 * 1 2 3 26 26 H 1.08996 * 109.46774 * 60.00297 * 1 2 3 27 27 H 1.09001 * 109.47019 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47305 * 239.99697 * 2 1 3 29 29 H 1.09004 * 109.47187 * 120.00202 * 2 1 3 30 30 H 1.08991 * 109.47615 * 65.08115 * 6 4 3 31 31 H 1.09001 * 109.46757 * 305.07640 * 6 4 3 32 32 H 0.97003 * 119.99528 * 354.95801 * 8 7 6 33 33 H 0.97000 * 120.00198 * 359.97438 * 9 7 6 34 34 H 1.08995 * 109.47198 * 89.99405 * 13 12 11 35 35 H 1.08997 * 109.47068 * 210.00025 * 13 12 11 36 36 H 1.09002 * 109.47021 * 329.99699 * 13 12 11 37 37 H 1.07995 * 120.18902 * 179.71969 * 14 12 11 38 38 H 1.08000 * 120.86120 * 180.20396 * 15 14 12 39 39 H 0.96998 * 120.00238 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4204 2.8607 -0.1266 8 7 5.9878 3.1206 -1.2590 9 7 6.1843 2.5149 0.9605 10 6 7.5618 2.4440 0.8441 11 7 8.1399 2.7102 -0.3150 12 6 9.4491 2.6541 -0.4698 13 6 10.0460 2.9686 -1.8173 14 6 10.2874 2.3064 0.5791 15 6 9.7485 2.0212 1.8170 16 6 8.3477 2.0856 1.9666 17 6 7.7421 1.7986 3.2076 18 1 6.7405 1.3959 3.2394 19 6 8.4392 2.0356 4.3979 20 7 9.5574 2.7149 4.3770 21 14 7.7732 1.3824 6.0162 22 1 8.3147 0.0215 6.2610 23 1 8.1845 2.2851 7.1212 24 1 6.2908 1.3212 5.9529 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.6600 3.4381 0.9323 31 1 3.5134 3.4993 -0.8405 32 1 5.4457 3.2932 -2.0447 33 1 5.7588 2.3202 1.8102 34 1 10.2635 4.0349 -1.8784 35 1 10.9677 2.4016 -1.9476 36 1 9.3384 2.6967 -2.6006 37 1 11.3559 2.2624 0.4286 38 1 10.3827 1.7515 2.6485 39 1 10.0404 2.8795 5.2019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155701135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = -43.721293 kcal Electronic energy + Delta-G solvation = -22898.372888 eV Core-core repulsion = 19419.780686 eV Total energy + Delta-G solvation = -3478.592202 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.67200 -40.59026 -38.49332 -37.43408 -36.00207 -34.33196 -32.78200 -32.45686 -31.35375 -30.40743 -29.38141 -25.97950 -24.56050 -23.60225 -22.64058 -22.27615 -20.89685 -19.14170 -18.85952 -18.28940 -17.83930 -17.44462 -17.21616 -16.56504 -15.64526 -15.61556 -15.38753 -15.23808 -15.15522 -14.44921 -14.29198 -13.84085 -13.71938 -13.63806 -13.39411 -13.23546 -13.11523 -12.92834 -12.85958 -12.53188 -12.51915 -12.37853 -12.11880 -11.66543 -11.62026 -11.55022 -11.11539 -10.32900 -10.22754 -9.76883 -9.21210 -8.63885 -8.39945 -6.22536 0.78012 1.09558 1.13022 1.40738 1.41841 1.53071 1.54712 2.19279 2.22561 2.44040 2.84941 3.44678 3.79288 3.84983 3.98237 4.06961 4.08535 4.22807 4.34615 4.46306 4.53855 4.71705 4.74174 4.84250 4.92894 5.00683 5.05108 5.07631 5.13298 5.23317 5.30947 5.41560 5.43712 5.84635 5.86219 6.12587 6.35138 6.53950 6.65945 6.75201 6.87477 7.07365 7.75463 8.09635 8.39881 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011809 B = 0.005402 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.485909 B = 5181.786164 C = 7170.671603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.354 6.354 4 C 0.467 3.533 5 O -0.532 6.532 6 C -0.109 4.109 7 C 0.396 3.604 8 N -0.721 5.721 9 N -0.617 5.617 10 C 0.251 3.749 11 N -0.453 5.453 12 C 0.004 3.996 13 C -0.063 4.063 14 C -0.183 4.183 15 C -0.142 4.142 16 C 0.015 3.985 17 C -0.484 4.484 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.833 5.833 21 Si 0.983 3.017 22 H -0.268 1.268 23 H -0.271 1.271 24 H -0.253 1.253 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.337 0.663 33 H 0.419 0.581 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.013 -0.994 -3.842 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.271 6.271 4 C 0.310 3.690 5 O -0.421 6.421 6 C -0.151 4.151 7 C 0.111 3.889 8 N -0.349 5.349 9 N -0.250 5.250 10 C 0.015 3.985 11 N -0.167 5.167 12 C -0.133 4.133 13 C -0.121 4.121 14 C -0.205 4.205 15 C -0.169 4.169 16 C 0.008 3.992 17 C -0.515 4.515 18 H 0.098 0.902 19 C -0.178 4.178 20 N -0.460 5.460 21 Si 0.804 3.196 22 H -0.193 1.193 23 H -0.196 1.196 24 H -0.177 1.177 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.171 0.829 31 H 0.175 0.825 32 H 0.153 0.847 33 H 0.258 0.742 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.132 -0.876 -4.823 14.958 hybrid contribution -0.386 -0.718 1.742 1.923 sum -14.518 -1.593 -3.081 14.927 Atomic orbital electron populations 1.21813 0.89886 1.04371 1.03965 1.23302 0.97351 0.79264 1.02319 1.86490 1.23204 1.33607 1.83753 1.23715 0.80939 0.92456 0.71922 1.90781 1.61205 1.44254 1.45854 1.21600 0.90724 0.92036 1.10786 1.21179 0.87430 0.91798 0.88521 1.69492 1.41624 1.23872 0.99957 1.41166 1.02681 1.69479 1.11648 1.18699 0.84898 1.03688 0.91182 1.67006 1.11420 1.15480 1.22829 1.21055 0.88630 1.06563 0.97068 1.20270 0.99352 1.00966 0.91498 1.21677 0.99778 1.04883 0.94155 1.21434 0.95041 1.04132 0.96297 1.18295 0.92892 0.94960 0.93064 1.19402 1.02154 1.39603 0.90376 0.90191 1.26655 0.94459 0.92477 1.04218 1.69849 1.15221 1.29807 1.31129 0.85185 0.79886 0.78580 0.75975 1.19341 1.19557 1.17676 0.90973 0.90924 0.88387 0.91765 0.91730 0.82889 0.82477 0.84666 0.74227 0.92036 0.90688 0.92538 0.86206 0.86782 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 10.29 71.98 0.74 -0.96 16 2 C 0.05 0.99 6.19 71.98 0.45 1.44 16 3 O -0.35 -8.00 10.22 -51.44 -0.53 -8.52 16 4 C 0.47 12.93 7.94 71.24 0.57 13.50 16 5 O -0.53 -19.81 15.78 21.98 0.35 -19.46 16 6 C -0.11 -2.57 6.19 29.10 0.18 -2.39 16 7 C 0.40 14.52 6.41 137.74 0.88 15.40 16 8 N -0.72 -28.74 11.34 -49.68 -0.56 -29.31 16 9 N -0.62 -26.86 5.38 -182.36 -0.98 -27.84 16 10 C 0.25 13.09 7.48 133.94 1.00 14.09 16 11 N -0.45 -23.49 7.57 -179.40 -1.36 -24.85 16 12 C 0.00 0.21 6.79 42.65 0.29 0.50 16 13 C -0.06 -2.41 10.15 71.24 0.72 -1.68 16 14 C -0.18 -9.01 9.69 22.32 0.22 -8.79 16 15 C -0.14 -7.72 8.76 22.90 0.20 -7.52 16 16 C 0.01 0.80 5.57 -21.07 -0.12 0.68 16 17 C -0.48 -25.14 8.45 23.37 0.20 -24.94 16 18 H 0.08 3.90 6.80 -2.91 -0.02 3.88 16 19 C 0.04 1.75 5.27 85.26 0.45 2.20 16 20 N -0.83 -43.07 10.90 21.83 0.24 -42.83 16 21 Si 0.98 37.24 29.57 68.60 2.03 39.27 16 22 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 23 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 24 H -0.25 -9.09 7.11 99.48 0.71 -8.39 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 29 H 0.06 1.34 8.13 -2.38 -0.02 1.32 16 30 H 0.15 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.16 2.56 7.98 -2.39 -0.02 2.54 16 32 H 0.34 11.08 8.64 -92.71 -0.80 10.28 16 33 H 0.42 16.93 7.00 -92.71 -0.65 16.28 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.12 5.11 8.06 -2.91 -0.02 5.08 16 38 H 0.11 6.35 6.34 -2.91 -0.02 6.33 16 39 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 Total: -1.00 -72.15 337.58 4.61 -67.54 By element: Atomic # 1 Polarization: 44.83 SS G_CDS: -0.35 Total: 44.47 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 5.78 Total: 1.52 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -2.67 Total: -124.83 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.18 Total: -27.98 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -72.15 4.61 -67.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155701135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.823 kcal (2) G-P(sol) polarization free energy of solvation -72.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds