Wall clock time and date at job start Tue Mar 31 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36909 * 119.99628 * 2 1 4 4 H 1.08002 * 119.99662 * 214.95594 * 3 2 1 5 5 C 1.39017 * 120.00273 * 34.95572 * 3 2 1 6 6 N 1.31376 * 119.99921 * 5.19482 * 5 3 2 7 7 Si 1.86802 * 119.99958 * 185.19372 * 5 3 2 8 8 H 1.48502 * 109.47125 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46918 * 120.00021 * 7 5 3 10 10 H 1.48501 * 109.46889 * 240.00115 * 7 5 3 11 11 C 1.34779 * 120.00188 * 180.02562 * 2 1 3 12 12 O 1.21607 * 119.99882 * 5.46040 * 11 2 1 13 13 C 1.47615 * 119.99889 * 185.46511 * 11 2 1 14 14 C 1.41293 * 125.96071 * 175.08269 * 13 11 2 15 15 C 1.35022 * 107.75657 * 180.02562 * 14 13 11 16 16 N 1.36341 * 107.79859 * 359.89567 * 15 14 13 17 17 N 1.32155 * 125.96254 * 355.08042 * 13 11 2 18 18 C 1.46901 * 123.73184 * 180.14333 * 16 15 14 19 19 C 1.53158 * 107.56334 * 345.26803 * 18 16 15 20 20 C 1.53286 * 113.48477 * 272.85013 * 19 18 16 21 21 C 1.53869 * 86.95576 * 220.25320 * 20 19 18 22 22 C 1.53287 * 113.47828 * 174.89375 * 19 18 16 23 23 C 1.52834 * 112.69602 * 43.87996 * 19 18 16 24 24 O 1.36000 * 128.02036 * 179.76544 * 15 14 13 25 25 H 1.08999 * 109.47092 * 264.99669 * 1 2 3 26 26 H 1.08996 * 109.47271 * 24.99920 * 1 2 3 27 27 H 1.09006 * 109.46985 * 145.00574 * 1 2 3 28 28 H 0.97000 * 119.99963 * 179.97438 * 6 5 3 29 29 H 1.08003 * 126.11833 * 0.05121 * 14 13 11 30 30 H 1.08998 * 109.83991 * 225.75168 * 18 16 15 31 31 H 1.09007 * 109.89061 * 104.81321 * 18 16 15 32 32 H 1.08991 * 113.63800 * 334.77347 * 20 19 18 33 33 H 1.09006 * 113.63233 * 105.74404 * 20 19 18 34 34 H 1.08999 * 113.60604 * 270.47983 * 21 20 19 35 35 H 1.09002 * 113.67262 * 139.62543 * 21 20 19 36 36 H 1.09005 * 113.63620 * 254.27257 * 22 19 18 37 37 H 1.09001 * 113.63282 * 25.23201 * 22 19 18 38 38 H 1.09007 * 109.52323 * 59.18513 * 23 19 18 39 39 H 1.09001 * 109.52218 * 179.37255 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1857 0.0000 4 1 3.0833 1.2701 -0.5359 5 6 1.6424 2.2810 0.6898 6 7 0.5612 2.1514 1.4247 7 14 2.4985 3.9371 0.5716 8 1 3.6851 3.8190 -0.3135 9 1 1.5597 4.9406 0.0087 10 1 2.9310 4.3685 1.9252 11 6 2.1389 -1.1672 -0.0005 12 8 1.5350 -2.2179 -0.1012 13 6 3.6100 -1.1701 0.1212 14 6 4.4311 -2.3145 0.2325 15 6 5.7115 -1.8955 0.3231 16 7 5.7089 -0.5332 0.2692 17 7 4.3889 -0.1027 0.1452 18 6 6.9251 0.2881 0.3355 19 6 8.0616 -0.6085 0.8358 20 6 8.1627 -0.6711 2.3641 21 6 9.6898 -0.6179 2.1832 22 6 9.4293 0.0836 0.8387 23 6 8.0696 -1.9809 0.1633 24 8 6.8339 -2.6531 0.4492 25 1 -0.3633 -0.0896 1.0237 26 1 -0.3633 0.9313 -0.4343 27 1 -0.3633 -0.8419 -0.5894 28 1 0.2077 2.9156 1.9063 29 1 4.0948 -3.3408 0.2428 30 1 6.7750 1.1162 1.0282 31 1 7.1667 0.6737 -0.6551 32 1 7.7512 0.2048 2.8655 33 1 7.8053 -1.6098 2.7875 34 1 10.1516 -1.5999 2.0809 35 1 10.1953 0.0133 2.9141 36 1 10.0891 -0.2489 0.0373 37 1 9.3695 1.1692 0.9165 38 1 8.1763 -1.8578 -0.9145 39 1 8.9022 -2.5700 0.5477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156167103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:23 Heat of formation + Delta-G solvation = 51.221992 kcal Electronic energy + Delta-G solvation = -23861.031505 eV Core-core repulsion = 20386.556353 eV Total energy + Delta-G solvation = -3474.475152 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57136 -39.63247 -38.05229 -37.18550 -34.67739 -32.82265 -31.42691 -29.63458 -28.26595 -27.03093 -26.07591 -25.87653 -24.69183 -23.25886 -21.41396 -20.69853 -19.02999 -18.33779 -18.05081 -16.47400 -16.20534 -15.84155 -15.60921 -15.34997 -14.64684 -14.49799 -14.20321 -14.13082 -14.03161 -13.77086 -13.12419 -12.90582 -12.73958 -12.48957 -11.86968 -11.70262 -11.63289 -11.30808 -11.23621 -11.10552 -10.95266 -10.82167 -10.67384 -10.57057 -10.53880 -10.29853 -9.64464 -9.01635 -8.62763 -8.44775 -7.83976 -7.53179 -6.33533 -3.95321 2.24530 2.67039 2.87701 3.16903 3.22324 3.25381 3.28661 3.99348 4.04762 4.13546 4.24053 4.36372 4.48304 4.54701 4.81653 4.95226 4.98145 5.11940 5.19146 5.30953 5.33845 5.39276 5.44782 5.56208 5.71809 5.75023 5.82957 5.94651 6.00848 6.32130 6.44284 6.58797 6.80455 7.00175 7.16143 7.34633 7.58719 7.73037 7.91160 8.25868 8.53647 9.12872 9.54102 9.94293 10.70637 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.005607 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.449164 B = 4992.966034 C = 6273.892841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.421 5.421 3 C -0.314 4.314 4 H 0.116 0.884 5 C 0.040 3.960 6 N -0.869 5.869 7 Si 0.924 3.076 8 H -0.266 1.266 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.523 3.477 12 O -0.602 6.602 13 C 0.084 3.916 14 C -0.237 4.237 15 C 0.243 3.757 16 N -0.413 5.413 17 N -0.212 5.212 18 C 0.150 3.850 19 C -0.145 4.145 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.117 4.117 23 C 0.080 3.920 24 O -0.289 6.289 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.269 0.731 29 H 0.155 0.845 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.181 -1.496 -0.291 18.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.138 5.138 3 C -0.444 4.444 4 H 0.134 0.866 5 C -0.166 4.166 6 N -0.506 5.506 7 Si 0.751 3.249 8 H -0.190 1.190 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.311 3.689 12 O -0.487 6.487 13 C -0.084 4.084 14 C -0.267 4.267 15 C 0.079 3.921 16 N -0.209 5.209 17 N -0.040 5.040 18 C 0.029 3.971 19 C -0.146 4.146 20 C -0.163 4.163 21 C -0.177 4.177 22 C -0.155 4.155 23 C 0.005 3.995 24 O -0.197 6.197 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.172 0.828 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.921 -0.833 -0.206 17.942 hybrid contribution 0.561 0.424 0.172 0.723 sum 18.482 -0.409 -0.035 18.486 Atomic orbital electron populations 1.21332 0.80282 0.99633 1.00973 1.43481 1.05780 1.04741 1.59756 1.20166 1.07063 0.86799 1.30348 0.86641 1.25529 0.96245 1.00428 0.94418 1.69959 1.21372 1.31457 1.27840 0.85901 0.79507 0.81391 0.78144 1.18985 1.20727 1.20766 1.17073 0.83636 0.84154 0.84046 1.90624 1.68259 1.31641 1.58188 1.22128 0.95184 0.89845 1.01196 1.20172 0.87564 1.00311 1.18676 1.19412 0.88146 0.82058 1.02517 1.49783 1.07027 1.03346 1.60727 1.78484 0.83643 1.19426 1.22434 1.21749 0.79337 0.93271 1.02789 1.22664 0.96551 0.96787 0.98602 1.22920 0.96355 1.03618 0.93416 1.22878 0.96445 1.01045 0.97368 1.22790 0.93715 1.00526 0.98431 1.22693 0.85431 0.91590 0.99809 1.86529 1.12151 1.34996 1.86040 0.92743 0.91584 0.94394 0.92117 0.82782 0.88471 0.89883 0.89266 0.90552 0.89907 0.90830 0.90568 0.88945 0.91167 0.86931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.07 8.71 59.85 0.52 3.59 16 2 N -0.42 -11.50 2.97 -123.36 -0.37 -11.87 16 3 C -0.31 -8.45 8.09 -15.00 -0.12 -8.57 16 4 H 0.12 3.09 5.71 -52.49 -0.30 2.79 16 5 C 0.04 1.04 5.18 -17.46 -0.09 0.95 16 6 N -0.87 -23.54 11.15 55.50 0.62 -22.92 16 7 Si 0.92 20.32 29.56 -169.99 -5.02 15.30 16 8 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 11 C 0.52 14.24 7.63 -12.43 -0.09 14.14 16 12 O -0.60 -17.16 16.53 5.27 0.09 -17.07 16 13 C 0.08 2.06 6.85 -82.74 -0.57 1.50 16 14 C -0.24 -5.11 10.59 -39.56 -0.42 -5.53 16 15 C 0.24 4.55 7.56 -16.69 -0.13 4.42 16 16 N -0.41 -7.71 4.08 -60.98 -0.25 -7.96 16 17 N -0.21 -4.91 9.33 33.41 0.31 -4.60 16 18 C 0.15 2.01 6.63 -3.74 -0.02 1.98 16 19 C -0.14 -1.47 0.84 -154.22 -0.13 -1.60 16 20 C -0.13 -1.26 7.19 -26.13 -0.19 -1.45 16 21 C -0.14 -0.98 7.74 -25.83 -0.20 -1.18 16 22 C -0.12 -0.81 7.23 -26.13 -0.19 -1.00 16 23 C 0.08 0.85 6.11 37.07 0.23 1.08 16 24 O -0.29 -4.44 10.59 -19.74 -0.21 -4.65 16 25 H 0.05 1.43 7.73 -51.93 -0.40 1.03 16 26 H 0.07 1.65 7.29 -51.93 -0.38 1.27 16 27 H 0.04 0.91 7.50 -51.93 -0.39 0.52 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.15 3.16 8.06 -52.48 -0.42 2.74 16 30 H 0.10 1.27 7.85 -51.93 -0.41 0.86 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 0.93 7.89 -51.93 -0.41 0.52 16 33 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.08 0.50 7.63 -51.93 -0.40 0.11 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 37 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.11 0.87 7.34 -51.93 -0.38 0.49 16 LS Contribution 319.92 15.07 4.82 4.82 Total: -1.00 -32.50 319.92 -6.56 -39.06 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.15 Total: 1.55 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -1.40 Total: 8.35 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.32 Total: -47.35 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.12 Total: -21.72 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.50 -6.56 -39.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156167103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.282 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds