Wall clock time and date at job start Tue Mar 31 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36909 * 119.99628 * 2 1 4 4 H 1.08002 * 119.99662 * 214.95594 * 3 2 1 5 5 C 1.39017 * 120.00273 * 34.95572 * 3 2 1 6 6 N 1.31376 * 119.99921 * 5.19482 * 5 3 2 7 7 Si 1.86802 * 119.99958 * 185.19372 * 5 3 2 8 8 H 1.48502 * 109.47125 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46918 * 120.00021 * 7 5 3 10 10 H 1.48501 * 109.46889 * 240.00115 * 7 5 3 11 11 C 1.34779 * 120.00188 * 180.02562 * 2 1 3 12 12 O 1.21607 * 119.99882 * 5.46040 * 11 2 1 13 13 C 1.47615 * 119.99889 * 185.46511 * 11 2 1 14 14 C 1.41293 * 125.96071 * 175.08269 * 13 11 2 15 15 C 1.35022 * 107.75657 * 180.02562 * 14 13 11 16 16 N 1.36341 * 107.79859 * 359.89567 * 15 14 13 17 17 N 1.32155 * 125.96254 * 355.08042 * 13 11 2 18 18 C 1.46901 * 123.73184 * 180.14333 * 16 15 14 19 19 C 1.53158 * 107.56334 * 345.26803 * 18 16 15 20 20 C 1.53286 * 113.48477 * 272.85013 * 19 18 16 21 21 C 1.53869 * 86.95576 * 220.25320 * 20 19 18 22 22 C 1.53287 * 113.47828 * 174.89375 * 19 18 16 23 23 C 1.52834 * 112.69602 * 43.87996 * 19 18 16 24 24 O 1.36000 * 128.02036 * 179.76544 * 15 14 13 25 25 H 1.08999 * 109.47092 * 264.99669 * 1 2 3 26 26 H 1.08996 * 109.47271 * 24.99920 * 1 2 3 27 27 H 1.09006 * 109.46985 * 145.00574 * 1 2 3 28 28 H 0.97000 * 119.99963 * 179.97438 * 6 5 3 29 29 H 1.08003 * 126.11833 * 0.05121 * 14 13 11 30 30 H 1.08998 * 109.83991 * 225.75168 * 18 16 15 31 31 H 1.09007 * 109.89061 * 104.81321 * 18 16 15 32 32 H 1.08991 * 113.63800 * 334.77347 * 20 19 18 33 33 H 1.09006 * 113.63233 * 105.74404 * 20 19 18 34 34 H 1.08999 * 113.60604 * 270.47983 * 21 20 19 35 35 H 1.09002 * 113.67262 * 139.62543 * 21 20 19 36 36 H 1.09005 * 113.63620 * 254.27257 * 22 19 18 37 37 H 1.09001 * 113.63282 * 25.23201 * 22 19 18 38 38 H 1.09007 * 109.52323 * 59.18513 * 23 19 18 39 39 H 1.09001 * 109.52218 * 179.37255 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1857 0.0000 4 1 3.0833 1.2701 -0.5359 5 6 1.6424 2.2810 0.6898 6 7 0.5612 2.1514 1.4247 7 14 2.4985 3.9371 0.5716 8 1 3.6851 3.8190 -0.3135 9 1 1.5597 4.9406 0.0087 10 1 2.9310 4.3685 1.9252 11 6 2.1389 -1.1672 -0.0005 12 8 1.5350 -2.2179 -0.1012 13 6 3.6100 -1.1701 0.1212 14 6 4.4311 -2.3145 0.2325 15 6 5.7115 -1.8955 0.3231 16 7 5.7089 -0.5332 0.2692 17 7 4.3889 -0.1027 0.1452 18 6 6.9251 0.2881 0.3355 19 6 8.0616 -0.6085 0.8358 20 6 8.1627 -0.6711 2.3641 21 6 9.6898 -0.6179 2.1832 22 6 9.4293 0.0836 0.8387 23 6 8.0696 -1.9809 0.1633 24 8 6.8339 -2.6531 0.4492 25 1 -0.3633 -0.0896 1.0237 26 1 -0.3633 0.9313 -0.4343 27 1 -0.3633 -0.8419 -0.5894 28 1 0.2077 2.9156 1.9063 29 1 4.0948 -3.3408 0.2428 30 1 6.7750 1.1162 1.0282 31 1 7.1667 0.6737 -0.6551 32 1 7.7512 0.2048 2.8655 33 1 7.8053 -1.6098 2.7875 34 1 10.1516 -1.5999 2.0809 35 1 10.1953 0.0133 2.9141 36 1 10.0891 -0.2489 0.0373 37 1 9.3695 1.1692 0.9165 38 1 8.1763 -1.8578 -0.9145 39 1 8.9022 -2.5700 0.5477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156167103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:23 Heat of formation + Delta-G solvation = 29.327116 kcal Electronic energy + Delta-G solvation = -23861.980938 eV Core-core repulsion = 20386.556353 eV Total energy + Delta-G solvation = -3475.424585 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.87848 -40.92154 -39.83884 -38.44472 -36.76513 -34.14831 -33.47175 -31.06623 -29.61188 -28.60564 -27.46560 -26.75994 -26.55603 -24.40540 -23.12850 -21.79760 -20.90989 -19.74476 -19.14823 -18.21637 -17.64615 -17.21966 -16.81453 -16.52605 -16.31092 -15.99109 -15.96344 -15.64895 -15.41592 -15.03889 -14.61316 -14.37483 -14.07495 -13.60868 -13.40065 -13.20421 -13.16320 -12.82992 -12.64487 -12.61085 -12.52047 -12.34566 -12.04092 -11.69261 -11.39129 -11.35485 -11.24939 -11.02991 -10.69068 -10.03483 -9.61562 -9.40127 -8.33692 -6.04028 0.53565 1.19044 1.28502 1.42781 1.46418 1.58234 1.99910 2.29867 2.55257 2.91447 3.13247 3.16954 3.24978 3.49570 3.52497 3.85340 3.87005 4.19890 4.23100 4.33570 4.42355 4.48994 4.55008 4.58951 4.77247 4.79597 4.82172 4.87630 4.91841 4.98100 5.10117 5.14508 5.20843 5.22745 5.38510 5.42671 5.61412 5.84823 6.34040 6.49400 6.57452 7.08588 7.47498 7.87082 8.71828 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.005607 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.449164 B = 4992.966034 C = 6273.892841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.434 5.434 3 C -0.332 4.332 4 H 0.116 0.884 5 C -0.002 4.002 6 N -0.899 5.899 7 Si 0.992 3.008 8 H -0.257 1.257 9 H -0.272 1.272 10 H -0.279 1.279 11 C 0.511 3.489 12 O -0.628 6.628 13 C 0.056 3.944 14 C -0.267 4.267 15 C 0.271 3.729 16 N -0.400 5.400 17 N -0.236 5.236 18 C 0.133 3.867 19 C -0.145 4.145 20 C -0.139 4.139 21 C -0.127 4.127 22 C -0.099 4.099 23 C 0.069 3.931 24 O -0.293 6.293 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.273 0.727 29 H 0.153 0.847 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.138 -0.341 -0.537 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.150 5.150 3 C -0.461 4.461 4 H 0.133 0.867 5 C -0.205 4.205 6 N -0.537 5.537 7 Si 0.815 3.185 8 H -0.180 1.180 9 H -0.197 1.197 10 H -0.205 1.205 11 C 0.299 3.701 12 O -0.516 6.516 13 C -0.110 4.110 14 C -0.297 4.297 15 C 0.104 3.896 16 N -0.197 5.197 17 N -0.065 5.065 18 C 0.014 3.986 19 C -0.147 4.147 20 C -0.176 4.176 21 C -0.164 4.164 22 C -0.137 4.137 23 C -0.005 4.005 24 O -0.201 6.201 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.171 0.829 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 21.896 0.330 -0.458 21.903 hybrid contribution -0.505 0.017 0.281 0.579 sum 21.391 0.347 -0.177 21.394 Atomic orbital electron populations 1.21204 0.80066 0.99808 1.00108 1.43732 1.06308 1.05190 1.59797 1.20357 1.07484 0.86956 1.31292 0.86719 1.26410 0.96735 1.03756 0.93597 1.70062 1.22507 1.32702 1.28388 0.84885 0.78742 0.76646 0.78224 1.18049 1.19737 1.20490 1.17539 0.85156 0.83791 0.83571 1.90566 1.69353 1.32362 1.59336 1.21799 0.94135 0.91475 1.03609 1.20186 0.88755 0.99786 1.20970 1.19185 0.88564 0.82172 0.99728 1.50055 1.06934 1.04084 1.58638 1.78277 0.85611 1.19600 1.22992 1.22356 0.78102 0.93791 1.04348 1.22777 0.97121 0.96450 0.98331 1.22989 0.99223 1.02257 0.93153 1.22862 0.93791 1.02149 0.97572 1.22793 0.91068 1.00815 0.99052 1.23226 0.83867 0.92206 1.01236 1.86560 1.12654 1.35265 1.85572 0.94181 0.91579 0.93714 0.91717 0.82891 0.88228 0.87869 0.90240 0.92457 0.88404 0.89783 0.88168 0.88124 0.89608 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.94 8.71 127.77 1.11 8.05 16 2 N -0.43 -24.62 2.97 -662.44 -1.97 -26.59 16 3 C -0.33 -18.25 8.09 84.09 0.68 -17.56 16 4 H 0.12 6.25 5.71 -2.91 -0.02 6.23 16 5 C 0.00 -0.12 5.18 84.95 0.44 0.32 16 6 N -0.90 -49.44 11.15 21.67 0.24 -49.20 16 7 Si 0.99 41.32 29.56 68.60 2.03 43.35 16 8 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 9 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 10 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 11 C 0.51 29.04 7.63 86.72 0.66 29.70 16 12 O -0.63 -37.55 16.53 -4.05 -0.07 -37.62 16 13 C 0.06 2.83 6.85 42.32 0.29 3.12 16 14 C -0.27 -11.80 10.59 22.28 0.24 -11.57 16 15 C 0.27 9.95 7.56 83.25 0.63 10.58 16 16 N -0.40 -14.58 4.08 -457.38 -1.87 -16.45 16 17 N -0.24 -11.04 9.33 -48.21 -0.45 -11.49 16 18 C 0.13 3.24 6.63 86.36 0.57 3.81 16 19 C -0.15 -2.45 0.84 -51.99 -0.04 -2.49 16 20 C -0.14 -2.43 7.19 30.98 0.22 -2.21 16 21 C -0.13 -1.21 7.74 31.18 0.24 -0.96 16 22 C -0.10 -0.88 7.23 30.98 0.22 -0.66 16 23 C 0.07 1.18 6.11 71.93 0.44 1.62 16 24 O -0.29 -8.39 10.59 -93.55 -0.99 -9.38 16 25 H 0.04 2.19 7.73 -2.39 -0.02 2.17 16 26 H 0.07 3.42 7.29 -2.39 -0.02 3.40 16 27 H 0.04 2.24 7.50 -2.38 -0.02 2.23 16 28 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.15 6.57 8.06 -2.91 -0.02 6.54 16 30 H 0.10 2.40 7.85 -2.39 -0.02 2.39 16 31 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.08 1.54 7.89 -2.39 -0.02 1.52 16 33 H 0.06 1.22 8.09 -2.38 -0.02 1.20 16 34 H 0.10 0.68 7.63 -2.39 -0.02 0.66 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 0.50 8.09 -2.38 -0.02 0.48 16 37 H 0.10 0.80 8.09 -2.39 -0.02 0.78 16 38 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.15 1.54 7.34 -2.39 -0.02 1.52 16 Total: -1.00 -73.33 319.92 3.70 -69.63 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.07 Total: 15.96 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 5.71 Total: 21.77 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -4.04 Total: -103.72 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -1.06 Total: -47.00 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -73.33 3.70 -69.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156167103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.958 kcal (2) G-P(sol) polarization free energy of solvation -73.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds