Wall clock time and date at job start Tue Mar 31 2020 06:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00108 * 2 1 4 4 O 1.20826 * 120.00156 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99979 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.33264 * 39.19834 * 5 3 2 7 7 C 1.54904 * 110.37627 * 276.82706 * 5 3 2 8 8 C 1.55141 * 101.65504 * 204.10044 * 7 5 3 9 9 H 1.09004 * 110.85667 * 277.20165 * 8 7 5 10 10 N 1.46503 * 110.70680 * 154.03781 * 8 7 5 11 11 C 1.39075 * 120.00082 * 160.22460 * 10 8 7 12 12 C 1.38746 * 119.66042 * 359.72108 * 11 10 8 13 13 C 1.40777 * 118.67172 * 180.02562 * 12 11 10 14 14 C 1.41552 * 120.99251 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99844 * 330.85644 * 14 13 12 16 16 C 1.40021 * 119.99944 * 150.86223 * 14 13 12 17 17 N 1.30753 * 120.00098 * 161.62343 * 16 14 13 18 18 Si 1.86798 * 120.00339 * 341.61810 * 16 14 13 19 19 H 1.48494 * 109.47228 * 95.39345 * 18 16 14 20 20 H 1.48498 * 109.47344 * 215.39803 * 18 16 14 21 21 H 1.48505 * 109.46663 * 335.39615 * 18 16 14 22 22 C 1.41179 * 118.01384 * 359.97438 * 13 12 11 23 23 C 1.36560 * 119.15002 * 0.02562 * 22 13 12 24 24 N 1.32098 * 121.26211 * 359.71453 * 23 22 13 25 25 C 1.54313 * 103.01868 * 35.65481 * 8 7 5 26 26 N 1.47447 * 107.23239 * 337.71462 * 25 8 7 27 27 H 1.08999 * 109.46876 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47214 * 300.00727 * 1 2 3 29 29 H 1.09005 * 109.46575 * 60.00604 * 1 2 3 30 30 H 1.08999 * 110.99332 * 86.01081 * 7 5 3 31 31 H 1.09003 * 110.99164 * 322.19263 * 7 5 3 32 32 H 0.97004 * 119.99924 * 339.93867 * 10 8 7 33 33 H 1.08004 * 120.66111 * 359.97438 * 12 11 10 34 34 H 0.96997 * 120.00171 * 179.97438 * 17 16 14 35 35 H 1.07998 * 120.42702 * 179.97438 * 22 13 12 36 36 H 1.07997 * 119.37188 * 180.02562 * 23 22 13 37 37 H 1.09002 * 109.89389 * 97.12209 * 25 8 7 38 38 H 1.09002 * 109.88688 * 218.31196 * 25 8 7 39 39 H 1.00899 * 110.99914 * 236.74407 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9863 0.5035 -0.6451 7 6 4.1134 1.1309 1.4426 8 6 5.4874 1.8423 1.3290 9 1 6.2418 1.1670 0.9253 10 7 5.9081 2.3673 2.6304 11 6 7.2468 2.6667 2.8598 12 6 8.1788 2.4599 1.8530 13 6 9.5282 2.7695 2.1078 14 6 10.5200 2.5772 1.1163 15 1 10.3974 1.8034 0.3728 16 6 11.6600 3.3901 1.0994 17 7 12.7248 3.0093 0.4431 18 14 11.6596 5.0186 2.0144 19 1 12.2578 4.8303 3.3604 20 1 12.4563 6.0142 1.2534 21 1 10.2640 5.5060 2.1568 22 6 9.8629 3.2774 3.3819 23 6 8.8760 3.4475 4.3104 24 7 7.6182 3.1513 4.0360 25 6 5.2021 2.9940 0.3424 26 7 4.0118 2.6138 -0.4403 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 4.2379 0.0817 1.7102 31 1 3.4678 1.6407 2.1579 32 1 5.2523 2.5101 3.3308 33 1 7.8752 2.0684 0.8933 34 1 13.5144 3.5726 0.4311 35 1 10.8863 3.5275 3.6194 36 1 9.1279 3.8362 5.2860 37 1 5.0055 3.9139 0.8930 38 1 6.0546 3.1323 -0.3226 39 1 4.2120 2.6208 -1.4293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156248870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:08 Heat of formation + Delta-G solvation = -41.232908 kcal Electronic energy + Delta-G solvation = -22643.667167 eV Core-core repulsion = 19165.182870 eV Total energy + Delta-G solvation = -3478.484297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.73381 -39.18011 -38.16892 -36.46508 -34.65089 -33.68097 -31.32069 -30.37996 -29.58765 -27.79895 -27.14137 -25.93190 -23.33470 -22.19155 -21.23107 -20.54487 -20.24368 -18.11767 -17.67852 -17.15698 -16.61989 -16.40393 -15.99830 -15.60683 -15.16129 -14.32652 -14.24757 -13.85250 -13.71885 -13.48598 -13.26977 -13.00632 -12.91655 -12.67683 -12.37475 -12.29223 -11.87549 -11.76768 -11.44908 -11.33069 -11.04193 -10.98743 -10.79514 -10.64163 -10.41680 -9.80653 -9.44250 -9.27526 -8.63642 -8.23552 -8.12304 -7.05412 -6.81155 -4.71117 2.05510 2.39760 2.57406 2.76115 3.09734 3.19261 3.30636 3.65507 3.93463 4.14150 4.32138 4.50322 4.59590 4.74436 4.85293 4.86858 4.93169 5.09046 5.20767 5.26686 5.46084 5.56298 5.67023 5.74733 5.90431 6.13418 6.17502 6.39910 6.51628 6.51966 6.64716 6.65726 7.05354 7.09293 7.21407 7.55502 7.67678 7.71323 7.90865 8.20662 8.42829 8.53408 8.71154 9.45628 9.96241 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029552 B = 0.003329 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.258844 B = 8409.148950 C = 8823.662150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.465 3.535 4 O -0.483 6.483 5 C 0.088 3.912 6 H 0.092 0.908 7 C -0.121 4.121 8 C 0.151 3.849 9 H 0.095 0.905 10 N -0.730 5.730 11 C 0.406 3.594 12 C -0.325 4.325 13 C 0.138 3.862 14 C -0.442 4.442 15 H 0.091 0.909 16 C 0.088 3.912 17 N -0.801 5.801 18 Si 0.916 3.084 19 H -0.268 1.268 20 H -0.291 1.291 21 H -0.246 1.246 22 C -0.315 4.315 23 C 0.150 3.850 24 N -0.621 5.621 25 C 0.033 3.967 26 N -0.663 5.663 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.394 0.606 33 H 0.104 0.896 34 H 0.287 0.713 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.719 -4.832 -2.009 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.305 3.695 4 O -0.367 6.367 5 C -0.024 4.024 6 H 0.110 0.890 7 C -0.160 4.160 8 C 0.042 3.958 9 H 0.113 0.887 10 N -0.365 5.365 11 C 0.177 3.823 12 C -0.351 4.351 13 C 0.130 3.870 14 C -0.472 4.472 15 H 0.109 0.891 16 C -0.133 4.133 17 N -0.425 5.425 18 Si 0.743 3.257 19 H -0.194 1.194 20 H -0.219 1.219 21 H -0.169 1.169 22 C -0.340 4.340 23 C -0.002 4.002 24 N -0.344 5.344 25 C -0.097 4.097 26 N -0.295 5.295 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.229 0.771 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.142 0.858 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.774 -4.084 -1.274 17.311 hybrid contribution 1.094 0.125 -0.566 1.238 sum -15.681 -3.959 -1.840 16.277 Atomic orbital electron populations 1.23236 0.76457 1.03550 1.02511 1.86505 1.23306 1.33754 1.84475 1.23624 0.91636 0.81287 0.72959 1.90664 1.66549 1.36277 1.43203 1.21757 0.87973 0.93541 0.99115 0.88997 1.22902 0.96539 1.02588 0.93933 1.21884 0.94690 0.94186 0.85053 0.88748 1.44025 1.05701 1.73213 1.13516 1.17987 0.83885 0.90525 0.89939 1.21102 0.92833 1.21840 0.99365 1.17677 0.91602 0.86363 0.91347 1.19466 0.99794 1.16042 1.11891 0.89075 1.26188 0.93425 1.00261 0.93402 1.69659 1.02248 1.36781 1.33786 0.86238 0.80473 0.80271 0.78737 1.19411 1.21859 1.16869 1.21529 0.99187 1.17027 0.96263 1.21318 0.87513 0.94066 0.97336 1.66818 1.20133 1.26194 1.21212 1.23287 0.90186 0.99827 0.96418 1.61205 1.34944 1.24155 1.09205 0.88158 0.91955 0.91991 0.88757 0.89627 0.77101 0.87845 0.90236 0.87713 0.85779 0.89518 0.91323 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.76 10.57 -39.25 -0.41 -4.17 16 3 C 0.46 5.61 7.24 36.00 0.26 5.87 16 4 O -0.48 -7.35 16.34 -18.75 -0.31 -7.66 16 5 C 0.09 0.94 3.80 -67.34 -0.26 0.68 16 6 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 7 C -0.12 -1.32 6.09 -24.59 -0.15 -1.47 16 8 C 0.15 2.03 2.85 -66.11 -0.19 1.85 16 9 H 0.09 1.32 6.62 -51.93 -0.34 0.98 16 10 N -0.73 -12.11 5.30 -52.22 -0.28 -12.39 16 11 C 0.41 8.59 7.65 -154.98 -1.19 7.40 16 12 C -0.32 -7.35 9.04 -38.43 -0.35 -7.70 16 13 C 0.14 3.46 5.13 -106.56 -0.55 2.91 16 14 C -0.44 -11.61 9.63 -37.65 -0.36 -11.98 16 15 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 16 C 0.09 2.24 5.42 -17.34 -0.09 2.15 16 17 N -0.80 -20.69 13.92 55.55 0.77 -19.91 16 18 Si 0.92 20.48 24.54 -169.99 -4.17 16.30 16 19 H -0.27 -5.78 6.70 56.52 0.38 -5.41 16 20 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.25 -5.72 6.85 56.52 0.39 -5.33 16 22 C -0.32 -7.54 7.24 -39.07 -0.28 -7.82 16 23 C 0.15 3.33 11.10 -18.04 -0.20 3.13 16 24 N -0.62 -13.91 10.37 -12.82 -0.13 -14.04 16 25 C 0.03 0.44 7.33 -2.84 -0.02 0.42 16 26 N -0.66 -7.96 6.64 -105.05 -0.70 -8.66 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 0.99 7.91 -51.93 -0.41 0.57 16 32 H 0.39 6.14 8.64 -40.82 -0.35 5.79 16 33 H 0.10 2.17 6.29 -52.48 -0.33 1.84 16 34 H 0.29 6.70 8.29 -40.82 -0.34 6.36 16 35 H 0.11 2.46 4.76 -52.49 -0.25 2.21 16 36 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 37 H 0.09 1.34 8.03 -51.93 -0.42 0.92 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.35 3.51 8.91 -39.29 -0.35 3.16 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -30.50 325.83 -7.63 -38.13 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.01 Total: 10.69 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.31 Total: -3.21 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.33 Total: -55.00 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.72 Total: -11.83 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.17 Total: 16.30 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.50 -7.63 -38.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156248870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.099 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds