Wall clock time and date at job start Tue Mar 31 2020 06:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00108 * 2 1 4 4 O 1.20826 * 120.00156 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99979 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.33264 * 39.19834 * 5 3 2 7 7 C 1.54904 * 110.37627 * 276.82706 * 5 3 2 8 8 C 1.55141 * 101.65504 * 204.10044 * 7 5 3 9 9 H 1.09004 * 110.85667 * 277.20165 * 8 7 5 10 10 N 1.46503 * 110.70680 * 154.03781 * 8 7 5 11 11 C 1.39075 * 120.00082 * 160.22460 * 10 8 7 12 12 C 1.38746 * 119.66042 * 359.72108 * 11 10 8 13 13 C 1.40777 * 118.67172 * 180.02562 * 12 11 10 14 14 C 1.41552 * 120.99251 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99844 * 330.85644 * 14 13 12 16 16 C 1.40021 * 119.99944 * 150.86223 * 14 13 12 17 17 N 1.30753 * 120.00098 * 161.62343 * 16 14 13 18 18 Si 1.86798 * 120.00339 * 341.61810 * 16 14 13 19 19 H 1.48494 * 109.47228 * 95.39345 * 18 16 14 20 20 H 1.48498 * 109.47344 * 215.39803 * 18 16 14 21 21 H 1.48505 * 109.46663 * 335.39615 * 18 16 14 22 22 C 1.41179 * 118.01384 * 359.97438 * 13 12 11 23 23 C 1.36560 * 119.15002 * 0.02562 * 22 13 12 24 24 N 1.32098 * 121.26211 * 359.71453 * 23 22 13 25 25 C 1.54313 * 103.01868 * 35.65481 * 8 7 5 26 26 N 1.47447 * 107.23239 * 337.71462 * 25 8 7 27 27 H 1.08999 * 109.46876 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47214 * 300.00727 * 1 2 3 29 29 H 1.09005 * 109.46575 * 60.00604 * 1 2 3 30 30 H 1.08999 * 110.99332 * 86.01081 * 7 5 3 31 31 H 1.09003 * 110.99164 * 322.19263 * 7 5 3 32 32 H 0.97004 * 119.99924 * 339.93867 * 10 8 7 33 33 H 1.08004 * 120.66111 * 359.97438 * 12 11 10 34 34 H 0.96997 * 120.00171 * 179.97438 * 17 16 14 35 35 H 1.07998 * 120.42702 * 179.97438 * 22 13 12 36 36 H 1.07997 * 119.37188 * 180.02562 * 23 22 13 37 37 H 1.09002 * 109.89389 * 97.12209 * 25 8 7 38 38 H 1.09002 * 109.88688 * 218.31196 * 25 8 7 39 39 H 1.00899 * 110.99914 * 236.74407 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9863 0.5035 -0.6451 7 6 4.1134 1.1309 1.4426 8 6 5.4874 1.8423 1.3290 9 1 6.2418 1.1670 0.9253 10 7 5.9081 2.3673 2.6304 11 6 7.2468 2.6667 2.8598 12 6 8.1788 2.4599 1.8530 13 6 9.5282 2.7695 2.1078 14 6 10.5200 2.5772 1.1163 15 1 10.3974 1.8034 0.3728 16 6 11.6600 3.3901 1.0994 17 7 12.7248 3.0093 0.4431 18 14 11.6596 5.0186 2.0144 19 1 12.2578 4.8303 3.3604 20 1 12.4563 6.0142 1.2534 21 1 10.2640 5.5060 2.1568 22 6 9.8629 3.2774 3.3819 23 6 8.8760 3.4475 4.3104 24 7 7.6182 3.1513 4.0360 25 6 5.2021 2.9940 0.3424 26 7 4.0118 2.6138 -0.4403 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 4.2379 0.0817 1.7102 31 1 3.4678 1.6407 2.1579 32 1 5.2523 2.5101 3.3308 33 1 7.8752 2.0684 0.8933 34 1 13.5144 3.5726 0.4311 35 1 10.8863 3.5275 3.6194 36 1 9.1279 3.8362 5.2860 37 1 5.0055 3.9139 0.8930 38 1 6.0546 3.1323 -0.3226 39 1 4.2120 2.6208 -1.4293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156248870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:08 Heat of formation + Delta-G solvation = -63.180332 kcal Electronic energy + Delta-G solvation = -22644.618879 eV Core-core repulsion = 19165.182870 eV Total energy + Delta-G solvation = -3479.436009 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.66782 -40.66665 -39.43079 -37.41568 -36.24023 -35.33986 -33.15867 -31.39762 -30.90405 -28.88628 -28.22562 -27.77846 -24.30245 -23.74391 -22.95308 -21.73575 -21.28632 -19.66296 -18.81735 -18.19874 -17.86883 -17.55643 -17.20078 -17.13953 -16.52769 -16.05916 -15.64840 -15.19869 -14.94985 -14.76166 -14.60725 -14.39001 -14.28271 -13.74332 -13.62726 -13.38304 -13.02257 -12.88798 -12.78068 -12.73874 -12.71623 -12.43563 -12.26000 -11.77848 -11.65551 -11.41331 -11.22382 -10.83494 -10.09484 -9.92145 -9.61503 -8.95547 -8.41077 -6.67563 0.77940 0.95567 1.12452 1.29714 1.43580 1.51441 1.59554 2.12881 2.32570 2.68875 3.19337 3.36443 3.54112 3.67740 3.91487 3.95557 4.07607 4.11244 4.21223 4.32550 4.34185 4.54651 4.62205 4.68925 4.71876 4.76958 4.81963 4.86853 4.94930 5.08565 5.28231 5.33537 5.41709 5.55571 5.76468 5.92336 6.21925 6.25233 6.33223 6.64652 6.77855 6.78861 6.90296 7.71724 8.11649 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029552 B = 0.003329 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.258844 B = 8409.148950 C = 8823.662150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.469 3.531 4 O -0.521 6.521 5 C 0.089 3.911 6 H 0.122 0.878 7 C -0.110 4.110 8 C 0.146 3.854 9 H 0.094 0.906 10 N -0.717 5.717 11 C 0.409 3.591 12 C -0.335 4.335 13 C 0.124 3.876 14 C -0.474 4.474 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.836 5.836 18 Si 0.968 3.032 19 H -0.253 1.253 20 H -0.278 1.278 21 H -0.261 1.261 22 C -0.334 4.334 23 C 0.152 3.848 24 N -0.625 5.625 25 C 0.042 3.958 26 N -0.673 5.673 27 H 0.133 0.867 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.402 0.598 33 H 0.113 0.887 34 H 0.297 0.703 35 H 0.107 0.893 36 H 0.159 0.841 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.214 -5.172 -1.135 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.408 6.408 5 C -0.022 4.022 6 H 0.140 0.860 7 C -0.148 4.148 8 C 0.038 3.962 9 H 0.112 0.888 10 N -0.351 5.351 11 C 0.178 3.822 12 C -0.361 4.361 13 C 0.115 3.885 14 C -0.505 4.505 15 H 0.081 0.919 16 C -0.161 4.161 17 N -0.461 5.461 18 Si 0.791 3.209 19 H -0.178 1.178 20 H -0.204 1.204 21 H -0.185 1.185 22 C -0.359 4.359 23 C -0.001 4.001 24 N -0.348 5.348 25 C -0.088 4.088 26 N -0.306 5.306 27 H 0.151 0.849 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.136 0.864 31 H 0.099 0.901 32 H 0.238 0.762 33 H 0.131 0.869 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.177 0.823 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -18.302 -4.465 -0.426 18.844 hybrid contribution 1.321 0.132 -0.825 1.563 sum -16.981 -4.333 -1.252 17.570 Atomic orbital electron populations 1.23532 0.74872 1.05685 1.02368 1.86497 1.24859 1.32626 1.83844 1.23826 0.92015 0.81196 0.71830 1.90655 1.67426 1.37553 1.45142 1.21869 0.87391 0.93555 0.99430 0.86027 1.22852 0.94355 1.03498 0.94087 1.22058 0.96141 0.94359 0.83603 0.88837 1.44099 1.04067 1.72037 1.14881 1.18185 0.85450 0.89336 0.89215 1.21248 0.92505 1.22007 1.00376 1.17881 0.92259 0.86723 0.91598 1.19455 1.01538 1.16878 1.12601 0.91886 1.26792 0.92863 1.02445 0.94016 1.69672 1.02982 1.38172 1.35307 0.85458 0.79650 0.77112 0.78637 1.17821 1.20418 1.18510 1.21634 0.99876 1.18072 0.96291 1.21845 0.87046 0.92849 0.98358 1.66986 1.20269 1.26089 1.21502 1.23049 0.90615 0.98890 0.96285 1.61109 1.34090 1.25492 1.09897 0.84910 0.92241 0.92087 0.86434 0.90059 0.76198 0.86930 0.89243 0.87565 0.82341 0.91664 0.91785 0.82230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.60 10.57 -51.40 -0.54 -7.14 16 3 C 0.47 10.44 7.24 71.24 0.52 10.96 16 4 O -0.52 -15.32 16.34 21.96 0.36 -14.96 16 5 C 0.09 1.69 3.80 44.64 0.17 1.86 16 6 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 7 C -0.11 -2.11 6.09 31.98 0.19 -1.91 16 8 C 0.15 3.69 2.85 46.17 0.13 3.83 16 9 H 0.09 2.46 6.62 -2.39 -0.02 2.44 16 10 N -0.72 -22.53 5.30 -319.13 -1.69 -24.23 16 11 C 0.41 16.77 7.65 132.91 1.02 17.79 16 12 C -0.33 -15.08 9.04 23.01 0.21 -14.87 16 13 C 0.12 6.22 5.13 -21.12 -0.11 6.11 16 14 C -0.47 -25.74 9.63 23.52 0.23 -25.51 16 15 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 16 C 0.06 2.91 5.42 85.29 0.46 3.37 16 17 N -0.84 -44.06 13.92 21.84 0.30 -43.76 16 18 Si 0.97 41.98 24.54 68.60 1.68 43.67 16 19 H -0.25 -10.28 6.70 99.48 0.67 -9.61 16 20 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 21 H -0.26 -11.88 6.85 99.48 0.68 -11.20 16 22 C -0.33 -15.68 7.24 22.60 0.16 -15.52 16 23 C 0.15 6.43 11.10 84.26 0.94 7.37 16 24 N -0.63 -26.77 10.37 -194.47 -2.02 -28.79 16 25 C 0.04 1.09 7.33 86.64 0.64 1.73 16 26 N -0.67 -15.19 6.64 -486.27 -3.23 -18.42 16 27 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 29 H 0.06 0.81 8.13 -2.38 -0.02 0.79 16 30 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 1.68 7.91 -2.39 -0.02 1.66 16 32 H 0.40 11.65 8.64 -92.71 -0.80 10.85 16 33 H 0.11 4.74 6.29 -2.91 -0.02 4.72 16 34 H 0.30 13.99 8.29 -92.71 -0.77 13.22 16 35 H 0.11 4.88 4.76 -2.91 -0.01 4.87 16 36 H 0.16 5.52 8.06 -2.91 -0.02 5.50 16 37 H 0.06 1.99 8.03 -2.39 -0.02 1.97 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.36 6.73 8.91 -89.69 -0.80 5.93 16 Total: -1.00 -66.10 325.83 0.05 -66.05 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.56 Total: 30.82 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 5.75 Total: -3.24 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -6.63 Total: -115.19 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.18 Total: -22.10 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.68 Total: 43.67 kcal Total: -66.10 0.05 -66.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156248870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.868 kcal (2) G-P(sol) polarization free energy of solvation -66.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds