Wall clock time and date at job start Tue Mar 31 2020 06:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34727 * 116.99788 * 2 1 4 4 O 1.21475 * 120.00168 * 359.97438 * 3 2 1 5 5 C 1.47706 * 119.99908 * 180.02562 * 3 2 1 6 6 C 1.39499 * 120.00713 * 180.02562 * 5 3 2 7 7 N 1.32012 * 119.97704 * 179.97438 * 6 5 3 8 8 C 1.32801 * 119.99310 * 0.02562 * 7 6 5 9 9 N 1.38363 * 119.99377 * 179.97438 * 8 7 6 10 10 C 1.46495 * 120.00058 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.35778 * 324.81848 * 10 9 8 12 12 C 1.52957 * 109.41809 * 84.64393 * 10 9 8 13 13 C 1.53662 * 109.32881 * 183.83377 * 12 10 9 14 14 C 1.51263 * 108.30946 * 305.13690 * 13 12 10 15 15 C 1.37874 * 120.85227 * 231.37817 * 14 13 12 16 16 N 1.31514 * 119.99899 * 350.27590 * 15 14 13 17 17 Si 1.86797 * 120.00368 * 170.26983 * 15 14 13 18 18 H 1.48510 * 109.46939 * 60.00084 * 17 15 14 19 19 H 1.48497 * 109.47214 * 300.00370 * 17 15 14 20 20 H 1.48495 * 109.47502 * 180.02562 * 17 15 14 21 21 C 1.51273 * 118.30232 * 51.65687 * 14 13 12 22 22 C 1.52967 * 109.41442 * 204.99488 * 10 9 8 23 23 C 1.39886 * 120.01193 * 0.24279 * 8 7 6 24 24 N 1.31458 * 120.02098 * 359.48581 * 23 8 7 25 25 H 1.09001 * 109.46960 * 299.99892 * 1 2 3 26 26 H 1.09000 * 109.46952 * 60.00402 * 1 2 3 27 27 H 1.09000 * 109.46967 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00928 * 359.97438 * 6 5 3 29 29 H 0.96999 * 119.99981 * 359.97438 * 9 8 7 30 30 H 1.09004 * 109.48211 * 303.68910 * 12 10 9 31 31 H 1.09004 * 109.48454 * 63.70972 * 12 10 9 32 32 H 1.08995 * 109.69178 * 185.52251 * 13 12 10 33 33 H 1.09007 * 109.78224 * 64.81055 * 13 12 10 34 34 H 0.97003 * 119.99773 * 354.32568 * 16 15 14 35 35 H 1.09004 * 109.62364 * 68.10658 * 21 14 13 36 36 H 1.08995 * 109.62818 * 188.49413 * 21 14 13 37 37 H 1.09004 * 109.47594 * 56.31713 * 22 10 9 38 38 H 1.08995 * 109.48415 * 296.27652 * 22 10 9 39 39 H 1.07996 * 119.99021 * 179.72377 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5387 1.2778 -0.0006 6 6 4.1721 2.5207 0.0000 7 7 5.4905 2.5891 0.0000 8 6 6.2131 1.4749 -0.0011 9 7 7.5948 1.5466 -0.0016 10 6 8.3921 0.3176 -0.0022 11 1 7.8838 -0.4431 0.5904 12 6 8.5553 -0.1821 -1.4386 13 6 9.3090 -1.5211 -1.4288 14 6 10.6119 -1.3276 -0.6851 15 6 11.8101 -1.7170 -1.2449 16 7 11.8187 -2.4335 -2.3477 17 14 13.4216 -1.2268 -0.4372 18 1 13.4729 -1.7792 0.9404 19 1 13.5165 0.2540 -0.3805 20 1 14.5563 -1.7651 -1.2295 21 6 10.5659 -0.7018 0.6914 22 6 9.7660 0.6025 0.6069 23 6 5.5775 0.2288 -0.0073 24 7 4.2647 0.1600 -0.0019 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.5841 3.4266 0.0004 29 1 8.0356 2.4106 -0.0016 30 1 7.5724 -0.3227 -1.8885 31 1 9.1181 0.5509 -2.0167 32 1 9.5148 -1.8342 -2.4523 33 1 8.7087 -2.2787 -0.9249 34 1 10.9845 -2.7577 -2.7219 35 1 10.0798 -1.3849 1.3880 36 1 11.5797 -0.4915 1.0320 37 1 9.6412 1.0177 1.6070 38 1 10.3004 1.3167 -0.0194 39 1 6.1654 -0.6771 -0.0126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157049523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:34 Heat of formation + Delta-G solvation = -64.279023 kcal Electronic energy + Delta-G solvation = -22673.659280 eV Core-core repulsion = 19194.175628 eV Total energy + Delta-G solvation = -3479.483652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42225 -41.13736 -39.42737 -37.56493 -36.60765 -35.29279 -33.73278 -31.60825 -31.54225 -29.07697 -28.21876 -26.02393 -25.45584 -23.95249 -23.09989 -22.43059 -21.40056 -19.64259 -19.08631 -18.40480 -18.26085 -17.89713 -17.51264 -16.65096 -16.26962 -16.10501 -15.67453 -15.47327 -15.22759 -14.82329 -14.33646 -14.27343 -14.16904 -13.77231 -13.46904 -12.99593 -12.96320 -12.76496 -12.72075 -12.45933 -12.23235 -12.01042 -11.93516 -11.88472 -11.80913 -11.67133 -11.37156 -11.05219 -10.51673 -10.34826 -10.27445 -9.08912 -8.55792 -6.14257 -0.62610 -0.02220 1.28957 1.53101 1.55522 1.60025 1.78419 1.82751 2.58905 2.63926 3.00824 3.15647 3.20176 3.32716 3.83578 3.86017 3.94325 4.05889 4.29193 4.30978 4.35430 4.45360 4.62799 4.69475 4.77053 4.83732 4.90595 4.94834 5.10439 5.12429 5.20011 5.22084 5.30155 5.51568 5.59318 5.71966 6.03469 6.15406 6.25101 6.28272 6.59248 6.75044 6.76995 7.55504 8.81177 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035640 B = 0.003146 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.447301 B = 8896.859830 C = 9356.788905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.542 3.458 4 O -0.524 6.524 5 C -0.077 4.077 6 C 0.191 3.809 7 N -0.524 5.524 8 C 0.392 3.608 9 N -0.674 5.674 10 C 0.166 3.834 11 H 0.087 0.913 12 C -0.108 4.108 13 C 0.000 4.000 14 C -0.576 4.576 15 C -0.016 4.016 16 N -0.944 5.944 17 Si 1.091 2.909 18 H -0.265 1.265 19 H -0.263 1.263 20 H -0.302 1.302 21 C -0.008 4.008 22 C -0.109 4.109 23 C -0.011 4.011 24 N -0.366 5.366 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.129 0.871 28 H 0.202 0.798 29 H 0.415 0.585 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.010 0.990 33 H 0.009 0.991 34 H 0.259 0.741 35 H 0.024 0.976 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.333 8.101 7.016 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.386 3.614 4 O -0.413 6.413 5 C -0.214 4.214 6 C 0.028 3.972 7 N -0.247 5.247 8 C 0.148 3.852 9 N -0.300 5.300 10 C 0.062 3.938 11 H 0.105 0.895 12 C -0.147 4.147 13 C -0.038 4.038 14 C -0.596 4.596 15 C -0.215 4.215 16 N -0.582 5.582 17 Si 0.915 3.085 18 H -0.191 1.191 19 H -0.189 1.189 20 H -0.229 1.229 21 C -0.046 4.046 22 C -0.147 4.147 23 C -0.186 4.186 24 N -0.082 5.082 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.148 0.852 28 H 0.219 0.781 29 H 0.253 0.747 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.029 0.971 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -13.866 8.162 6.844 17.485 hybrid contribution -1.529 -0.002 -0.419 1.586 sum -15.395 8.160 6.425 18.571 Atomic orbital electron populations 1.23646 0.74115 1.05860 1.02985 1.86675 1.25273 1.31471 1.83212 1.20381 0.87311 0.81793 0.71915 1.90820 1.66181 1.36402 1.47937 1.20625 0.91942 0.91767 1.17115 1.23746 0.89288 0.98096 0.86077 1.68290 1.06747 1.28718 1.20908 1.19858 0.87283 0.91018 0.87056 1.45030 1.00545 1.11006 1.73441 1.21055 0.91777 0.84337 0.96652 0.89539 1.21945 0.98347 0.98542 0.95846 1.19471 0.95065 0.93110 0.96155 1.21600 0.93332 1.41471 1.03154 1.26915 1.05209 0.93845 0.95521 1.70910 1.30504 1.34526 1.22284 0.83256 0.72394 0.77471 0.75378 1.19074 1.18852 1.22944 1.19565 0.96278 0.93372 0.95400 1.21768 0.93578 0.99500 0.99843 1.23458 0.90427 0.97885 1.06855 1.68158 1.06669 1.30563 1.02781 0.91288 0.91422 0.85246 0.78108 0.74715 0.93539 0.93621 0.97138 0.97270 0.92952 0.95805 0.94503 0.90860 0.92208 0.80208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.57 113.37 1.20 1.61 16 2 O -0.35 -8.60 10.39 -56.37 -0.59 -9.18 16 3 C 0.54 14.35 7.94 70.32 0.56 14.91 16 4 O -0.52 -14.47 16.12 19.92 0.32 -14.15 16 5 C -0.08 -2.09 6.74 41.73 0.28 -1.81 16 6 C 0.19 4.65 10.76 84.97 0.91 5.57 16 7 N -0.52 -13.72 10.52 -191.70 -2.02 -15.74 16 8 C 0.39 10.52 7.64 133.34 1.02 11.54 16 9 N -0.67 -17.12 5.22 -324.26 -1.69 -18.81 16 10 C 0.17 4.90 2.04 44.97 0.09 4.99 16 11 H 0.09 2.50 6.47 -2.38 -0.02 2.49 16 12 C -0.11 -3.86 5.40 30.80 0.17 -3.70 16 13 C 0.00 0.01 5.81 30.25 0.18 0.18 16 14 C -0.58 -27.40 5.48 -16.17 -0.09 -27.49 16 15 C -0.02 -0.85 5.45 84.65 0.46 -0.39 16 16 N -0.94 -54.77 13.57 21.45 0.29 -54.48 16 17 Si 1.09 46.34 27.20 68.60 1.87 48.21 16 18 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 19 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 20 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 21 C -0.01 -0.30 5.65 30.11 0.17 -0.13 16 22 C -0.11 -3.35 5.40 30.66 0.17 -3.19 16 23 C -0.01 -0.30 9.93 85.15 0.85 0.54 16 24 N -0.37 -10.74 10.26 -183.82 -1.89 -12.63 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.20 3.87 7.63 -2.91 -0.02 3.84 16 29 H 0.42 9.42 8.72 -92.71 -0.81 8.61 16 30 H 0.05 1.56 7.63 -2.38 -0.02 1.54 16 31 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.01 0.51 6.18 -2.39 -0.01 0.49 16 33 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.26 15.17 6.65 -92.71 -0.62 14.56 16 35 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.04 1.39 5.16 -2.39 -0.01 1.38 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 39 H 0.18 4.78 6.08 -2.91 -0.02 4.76 16 Total: -1.00 -61.28 323.05 2.69 -58.58 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.44 Total: 15.56 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 5.96 Total: 2.63 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -5.30 Total: -101.66 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.26 Total: -23.34 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.87 Total: 48.21 kcal Total: -61.28 2.69 -58.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.694 kcal (2) G-P(sol) polarization free energy of solvation -61.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds