Wall clock time and date at job start Tue Mar 31 2020 06:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34719 * 116.99749 * 2 1 4 4 O 1.21471 * 120.00600 * 359.97438 * 3 2 1 5 5 C 1.47744 * 119.99463 * 180.27457 * 3 2 1 6 6 C 1.40125 * 120.09541 * 179.72186 * 5 3 2 7 7 C 1.38273 * 117.99109 * 179.97438 * 6 5 3 8 8 C 1.39615 * 118.03248 * 359.97438 * 7 6 5 9 9 N 1.38470 * 120.04040 * 179.97438 * 8 7 6 10 10 C 1.46493 * 120.00285 * 0.02562 * 9 8 7 11 11 H 1.09004 * 109.41582 * 324.99222 * 10 9 8 12 12 C 1.52956 * 109.41611 * 84.85257 * 10 9 8 13 13 C 1.53242 * 109.39813 * 183.77431 * 12 10 9 14 14 C 1.51264 * 108.48440 * 305.26327 * 13 12 10 15 15 C 1.37878 * 120.85135 * 231.36274 * 14 13 12 16 16 N 1.31514 * 120.00329 * 348.89107 * 15 14 13 17 17 Si 1.86798 * 119.99790 * 168.88170 * 15 14 13 18 18 H 1.48497 * 109.47255 * 354.66413 * 17 15 14 19 19 H 1.48503 * 109.47020 * 114.66577 * 17 15 14 20 20 H 1.48502 * 109.47113 * 234.66471 * 17 15 14 21 21 C 1.51266 * 118.30007 * 51.39369 * 14 13 12 22 22 C 1.52963 * 109.41390 * 205.13567 * 10 9 8 23 23 N 1.32878 * 119.91231 * 0.02562 * 8 7 6 24 24 N 1.28363 * 122.16066 * 359.72084 * 23 8 7 25 25 H 1.09001 * 109.47106 * 59.99909 * 1 2 3 26 26 H 1.09000 * 109.47692 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46877 * 300.00194 * 1 2 3 28 28 H 1.07998 * 121.00220 * 359.95432 * 6 5 3 29 29 H 1.07993 * 120.98174 * 180.02562 * 7 6 5 30 30 H 0.97002 * 119.99771 * 180.02562 * 9 8 7 31 31 H 1.08996 * 109.48565 * 303.68353 * 12 10 9 32 32 H 1.08997 * 109.48412 * 63.72572 * 12 10 9 33 33 H 1.09010 * 109.61822 * 185.58752 * 13 12 10 34 34 H 1.09001 * 109.84808 * 65.08173 * 13 12 10 35 35 H 0.96994 * 120.00421 * 179.97438 * 16 15 14 36 36 H 1.08999 * 109.63314 * 188.93755 * 21 14 13 37 37 H 1.08998 * 109.62920 * 68.35907 * 21 14 13 38 38 H 1.08993 * 109.48344 * 296.27193 * 22 10 9 39 39 H 1.09005 * 109.48008 * 56.31191 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5390 1.2776 -0.0061 6 6 4.1772 2.5251 -0.0120 7 6 5.5598 2.5466 -0.0171 8 6 6.2351 1.3246 -0.0155 9 7 7.6195 1.2977 -0.0209 10 6 8.3766 2.5518 -0.0278 11 1 7.8406 3.2954 -0.6178 12 6 8.5343 3.0585 1.4068 13 6 9.2435 4.4168 1.3917 14 6 10.5463 4.2693 0.6375 15 6 11.7350 4.6985 1.1888 16 7 11.7265 5.4358 2.2778 17 14 13.3575 4.2323 0.3891 18 1 13.1038 3.2993 -0.7380 19 1 14.0269 5.4555 -0.1219 20 1 14.2316 3.5717 1.3914 21 6 10.5117 3.6395 -0.7374 22 6 9.7550 2.3103 -0.6454 23 7 5.5475 0.1876 -0.0097 24 7 4.2641 0.1652 -0.0002 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.6065 3.4419 -0.0129 29 1 6.1012 3.4810 -0.0213 30 1 8.0881 0.4484 -0.0202 31 1 7.5509 3.1680 1.8638 32 1 9.1250 2.3451 1.9814 33 1 9.4465 4.7350 2.4144 34 1 8.6152 5.1569 0.8961 35 1 12.5627 5.7374 2.6658 36 1 11.5294 3.4582 -1.0829 37 1 9.9993 4.3050 -1.4322 38 1 10.3162 1.6150 -0.0212 39 1 9.6372 1.8890 -1.6438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:53 Heat of formation + Delta-G solvation = -31.560085 kcal Electronic energy + Delta-G solvation = -22589.508648 eV Core-core repulsion = 19111.443796 eV Total energy + Delta-G solvation = -3478.064852 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.20260 -40.11463 -38.02494 -36.62294 -35.00957 -33.11065 -32.36309 -30.69068 -29.89473 -28.17126 -27.16535 -25.07814 -24.07492 -22.31231 -21.73011 -21.29032 -19.82475 -18.62032 -17.62976 -17.42644 -16.78105 -16.58273 -16.28858 -15.09305 -14.92708 -14.64202 -14.53401 -13.97969 -13.58882 -13.45260 -13.22546 -13.06545 -12.56653 -12.38819 -12.34211 -12.00253 -11.71539 -11.57176 -11.19535 -10.96793 -10.90719 -10.74194 -10.63534 -10.41129 -10.31263 -10.15008 -9.67990 -9.53625 -9.18847 -8.89586 -8.55755 -7.96035 -6.26281 -4.17178 0.55261 0.84611 2.33875 2.42647 3.03640 3.16271 3.24245 3.27361 3.66352 4.11595 4.25019 4.52131 4.60742 4.74598 4.90624 4.94791 4.98421 5.00733 5.27060 5.30077 5.55335 5.59612 5.75702 5.79666 5.93473 6.12372 6.23454 6.32129 6.44086 6.53481 6.60279 6.79910 6.92194 7.14087 7.20402 7.42834 7.50461 7.53978 7.62043 7.65740 8.20286 8.69038 8.79915 9.38719 10.82924 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.043582 B = 0.003007 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.307480 B = 9309.928742 C = 9653.132575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.337 6.337 3 C 0.541 3.459 4 O -0.508 6.508 5 C -0.050 4.050 6 C -0.021 4.021 7 C -0.188 4.188 8 C 0.374 3.626 9 N -0.686 5.686 10 C 0.151 3.849 11 H 0.078 0.922 12 C -0.122 4.122 13 C 0.014 3.986 14 C -0.496 4.496 15 C 0.079 3.921 16 N -0.882 5.882 17 Si 0.879 3.121 18 H -0.256 1.256 19 H -0.282 1.282 20 H -0.285 1.285 21 C -0.021 4.021 22 C -0.114 4.114 23 N -0.314 5.314 24 N -0.134 5.134 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.408 0.592 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.007 0.993 35 H 0.265 0.735 36 H 0.047 0.953 37 H 0.020 0.980 38 H 0.060 0.940 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.958 -7.591 -4.807 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.252 6.252 3 C 0.383 3.617 4 O -0.394 6.394 5 C -0.198 4.198 6 C -0.048 4.048 7 C -0.221 4.221 8 C 0.131 3.869 9 N -0.312 5.312 10 C 0.048 3.952 11 H 0.096 0.904 12 C -0.161 4.161 13 C -0.024 4.024 14 C -0.515 4.515 15 C -0.125 4.125 16 N -0.518 5.518 17 Si 0.707 3.293 18 H -0.181 1.181 19 H -0.208 1.208 20 H -0.211 1.211 21 C -0.059 4.059 22 C -0.152 4.152 23 N -0.172 5.172 24 N 0.016 4.984 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.176 0.824 29 H 0.178 0.822 30 H 0.244 0.756 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.895 -8.586 -4.659 16.985 hybrid contribution 0.902 1.059 -0.225 1.409 sum -12.993 -7.528 -4.884 15.790 Atomic orbital electron populations 1.23326 0.76160 1.03883 1.02562 1.86681 1.23149 1.31791 1.83601 1.20334 0.87363 0.81675 0.72313 1.90847 1.65933 1.36092 1.46577 1.21092 0.92070 0.92477 1.14200 1.22030 0.94111 0.98209 0.90486 1.21936 0.94196 0.99263 1.06713 1.20367 0.87718 0.91518 0.87333 1.45273 1.00688 1.11281 1.73954 1.21402 0.92252 0.82710 0.98803 0.90446 1.22149 0.98800 1.01553 0.93590 1.19334 0.93709 0.89892 0.99462 1.19976 0.92526 1.38943 1.00037 1.24857 0.98710 0.94070 0.94822 1.69886 1.27356 1.33314 1.21270 0.86751 0.83687 0.79142 0.79736 1.18093 1.20815 1.21127 1.19919 0.96885 0.91611 0.97474 1.21888 0.93975 1.01440 0.97916 1.73292 1.00073 1.22593 1.21226 1.73072 0.99321 1.25007 1.00989 0.91810 0.87859 0.91791 0.82358 0.82159 0.75586 0.94700 0.92469 0.92402 0.97500 0.92455 0.93486 0.96142 0.92164 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.34 -4.20 10.39 -40.54 -0.42 -4.62 16 3 C 0.54 7.46 7.94 34.62 0.27 7.73 16 4 O -0.51 -7.47 16.17 -19.24 -0.31 -7.78 16 5 C -0.05 -0.71 6.83 -82.86 -0.57 -1.28 16 6 C -0.02 -0.27 9.71 -38.86 -0.38 -0.65 16 7 C -0.19 -2.53 8.88 -39.05 -0.35 -2.88 16 8 C 0.37 5.54 7.71 -154.95 -1.20 4.35 16 9 N -0.69 -9.85 5.22 -53.88 -0.28 -10.13 16 10 C 0.15 2.43 2.05 -67.98 -0.14 2.29 16 11 H 0.08 1.22 6.47 -51.93 -0.34 0.88 16 12 C -0.12 -2.25 5.43 -26.63 -0.14 -2.40 16 13 C 0.01 0.31 5.93 -27.48 -0.16 0.15 16 14 C -0.50 -11.82 5.48 -98.93 -0.54 -12.36 16 15 C 0.08 2.01 5.44 -17.82 -0.10 1.92 16 16 N -0.88 -23.98 12.82 55.43 0.71 -23.26 16 17 Si 0.88 19.37 27.95 -169.99 -4.75 14.61 16 18 H -0.26 -5.31 5.58 56.52 0.32 -4.99 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.02 -0.43 5.65 -27.49 -0.16 -0.58 16 22 C -0.11 -1.94 5.40 -26.63 -0.14 -2.09 16 23 N -0.31 -5.02 11.55 31.21 0.36 -4.66 16 24 N -0.13 -2.13 11.30 33.31 0.38 -1.75 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.16 1.70 7.71 -52.49 -0.40 1.30 16 29 H 0.16 2.01 6.28 -52.49 -0.33 1.68 16 30 H 0.41 5.40 8.72 -40.82 -0.36 5.05 16 31 H 0.03 0.60 7.75 -51.93 -0.40 0.20 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.46 7.19 -51.92 -0.37 1.08 16 34 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.05 0.97 4.36 -51.93 -0.23 0.75 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -28.07 324.15 -6.99 -35.06 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.03 Total: 2.09 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.53 Total: -4.45 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 1.17 Total: -39.80 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.73 Total: -12.40 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.75 Total: 14.61 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.07 -6.99 -35.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.498 kcal (2) G-P(sol) polarization free energy of solvation -28.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds