Wall clock time and date at job start Tue Mar 31 2020 06:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34719 * 116.99749 * 2 1 4 4 O 1.21471 * 120.00600 * 359.97438 * 3 2 1 5 5 C 1.47744 * 119.99463 * 180.27457 * 3 2 1 6 6 C 1.40125 * 120.09541 * 179.72186 * 5 3 2 7 7 C 1.38273 * 117.99109 * 179.97438 * 6 5 3 8 8 C 1.39615 * 118.03248 * 359.97438 * 7 6 5 9 9 N 1.38470 * 120.04040 * 179.97438 * 8 7 6 10 10 C 1.46493 * 120.00285 * 0.02562 * 9 8 7 11 11 H 1.09004 * 109.41582 * 324.99222 * 10 9 8 12 12 C 1.52956 * 109.41611 * 84.85257 * 10 9 8 13 13 C 1.53242 * 109.39813 * 183.77431 * 12 10 9 14 14 C 1.51264 * 108.48440 * 305.26327 * 13 12 10 15 15 C 1.37878 * 120.85135 * 231.36274 * 14 13 12 16 16 N 1.31514 * 120.00329 * 348.89107 * 15 14 13 17 17 Si 1.86798 * 119.99790 * 168.88170 * 15 14 13 18 18 H 1.48497 * 109.47255 * 354.66413 * 17 15 14 19 19 H 1.48503 * 109.47020 * 114.66577 * 17 15 14 20 20 H 1.48502 * 109.47113 * 234.66471 * 17 15 14 21 21 C 1.51266 * 118.30007 * 51.39369 * 14 13 12 22 22 C 1.52963 * 109.41390 * 205.13567 * 10 9 8 23 23 N 1.32878 * 119.91231 * 0.02562 * 8 7 6 24 24 N 1.28363 * 122.16066 * 359.72084 * 23 8 7 25 25 H 1.09001 * 109.47106 * 59.99909 * 1 2 3 26 26 H 1.09000 * 109.47692 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46877 * 300.00194 * 1 2 3 28 28 H 1.07998 * 121.00220 * 359.95432 * 6 5 3 29 29 H 1.07993 * 120.98174 * 180.02562 * 7 6 5 30 30 H 0.97002 * 119.99771 * 180.02562 * 9 8 7 31 31 H 1.08996 * 109.48565 * 303.68353 * 12 10 9 32 32 H 1.08997 * 109.48412 * 63.72572 * 12 10 9 33 33 H 1.09010 * 109.61822 * 185.58752 * 13 12 10 34 34 H 1.09001 * 109.84808 * 65.08173 * 13 12 10 35 35 H 0.96994 * 120.00421 * 179.97438 * 16 15 14 36 36 H 1.08999 * 109.63314 * 188.93755 * 21 14 13 37 37 H 1.08998 * 109.62920 * 68.35907 * 21 14 13 38 38 H 1.08993 * 109.48344 * 296.27193 * 22 10 9 39 39 H 1.09005 * 109.48008 * 56.31191 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5390 1.2776 -0.0061 6 6 4.1772 2.5251 -0.0120 7 6 5.5598 2.5466 -0.0171 8 6 6.2351 1.3246 -0.0155 9 7 7.6195 1.2977 -0.0209 10 6 8.3766 2.5518 -0.0278 11 1 7.8406 3.2954 -0.6178 12 6 8.5343 3.0585 1.4068 13 6 9.2435 4.4168 1.3917 14 6 10.5463 4.2693 0.6375 15 6 11.7350 4.6985 1.1888 16 7 11.7265 5.4358 2.2778 17 14 13.3575 4.2323 0.3891 18 1 13.1038 3.2993 -0.7380 19 1 14.0269 5.4555 -0.1219 20 1 14.2316 3.5717 1.3914 21 6 10.5117 3.6395 -0.7374 22 6 9.7550 2.3103 -0.6454 23 7 5.5475 0.1876 -0.0097 24 7 4.2641 0.1652 -0.0002 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.6065 3.4419 -0.0129 29 1 6.1012 3.4810 -0.0213 30 1 8.0881 0.4484 -0.0202 31 1 7.5509 3.1680 1.8638 32 1 9.1250 2.3451 1.9814 33 1 9.4465 4.7350 2.4144 34 1 8.6152 5.1569 0.8961 35 1 12.5627 5.7374 2.6658 36 1 11.5294 3.4582 -1.0829 37 1 9.9993 4.3050 -1.4322 38 1 10.3162 1.6150 -0.0212 39 1 9.6372 1.8890 -1.6438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:52 Heat of formation + Delta-G solvation = -48.070275 kcal Electronic energy + Delta-G solvation = -22590.224583 eV Core-core repulsion = 19111.443796 eV Total energy + Delta-G solvation = -3478.780788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.30010 -41.14655 -39.39635 -37.61231 -36.44563 -34.20683 -33.98785 -31.98926 -31.48460 -29.28733 -28.33500 -26.24369 -25.18711 -23.81814 -23.23197 -22.51279 -21.25608 -19.75885 -18.70658 -18.53548 -17.97438 -17.80503 -17.54414 -16.39647 -16.30037 -16.13443 -15.61466 -15.04908 -14.89341 -14.73988 -14.33535 -14.31576 -14.14165 -13.98310 -13.47166 -13.16310 -13.10831 -12.84830 -12.75633 -12.57518 -12.10302 -11.90032 -11.81552 -11.80605 -11.70889 -11.39126 -11.20209 -10.89424 -10.75860 -10.59203 -10.42304 -9.16143 -8.16521 -6.09043 -0.54523 -0.22610 1.26980 1.40458 1.46203 1.48862 1.52881 1.88699 2.43227 2.55501 3.05996 3.12575 3.46462 3.53735 3.73920 3.89793 3.96705 4.16038 4.30519 4.37209 4.41368 4.52650 4.68983 4.72698 4.76081 4.86118 4.92420 4.98400 5.04691 5.14859 5.18431 5.20345 5.32992 5.61409 5.64393 5.78918 5.84821 5.89303 6.33460 6.45106 6.53741 6.98282 7.49007 7.56182 8.94271 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.043582 B = 0.003007 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.307480 B = 9309.928742 C = 9653.132575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.348 6.348 3 C 0.543 3.457 4 O -0.520 6.520 5 C -0.052 4.052 6 C -0.014 4.014 7 C -0.186 4.186 8 C 0.367 3.633 9 N -0.681 5.681 10 C 0.166 3.834 11 H 0.088 0.912 12 C -0.110 4.110 13 C 0.011 3.989 14 C -0.499 4.499 15 C 0.021 3.979 16 N -0.931 5.931 17 Si 0.930 3.070 18 H -0.229 1.229 19 H -0.288 1.288 20 H -0.294 1.294 21 C -0.024 4.024 22 C -0.108 4.108 23 N -0.330 5.330 24 N -0.154 5.154 25 H 0.069 0.931 26 H 0.133 0.867 27 H 0.067 0.933 28 H 0.181 0.819 29 H 0.173 0.827 30 H 0.414 0.586 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.019 0.981 34 H 0.008 0.992 35 H 0.261 0.739 36 H 0.046 0.954 37 H 0.029 0.971 38 H 0.057 0.943 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.203 -8.756 -6.536 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C 0.386 3.614 4 O -0.408 6.408 5 C -0.202 4.202 6 C -0.042 4.042 7 C -0.219 4.219 8 C 0.124 3.876 9 N -0.308 5.308 10 C 0.062 3.938 11 H 0.106 0.894 12 C -0.149 4.149 13 C -0.027 4.027 14 C -0.518 4.518 15 C -0.178 4.178 16 N -0.570 5.570 17 Si 0.756 3.244 18 H -0.153 1.153 19 H -0.214 1.214 20 H -0.221 1.221 21 C -0.062 4.062 22 C -0.147 4.147 23 N -0.188 5.188 24 N -0.002 5.002 25 H 0.087 0.913 26 H 0.151 0.849 27 H 0.086 0.914 28 H 0.198 0.802 29 H 0.190 0.810 30 H 0.252 0.748 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.166 -9.804 -6.416 19.165 hybrid contribution 1.099 1.427 0.328 1.830 sum -14.067 -8.377 -6.088 17.468 Atomic orbital electron populations 1.23686 0.73822 1.06080 1.03050 1.86665 1.25492 1.31065 1.83082 1.20261 0.87173 0.81945 0.72066 1.90836 1.66129 1.36518 1.47332 1.21359 0.92575 0.92786 1.13470 1.22273 0.94043 0.98536 0.89312 1.22100 0.94478 0.99206 1.06069 1.20443 0.87728 0.91830 0.87588 1.44951 1.00504 1.10845 1.74490 1.21074 0.92344 0.83608 0.96783 0.89366 1.21929 0.98559 0.98778 0.95651 1.19287 0.94107 0.92203 0.97139 1.20658 0.92615 1.37098 1.01431 1.25635 1.02010 0.94594 0.95526 1.70032 1.27622 1.35884 1.23503 0.85938 0.80007 0.78979 0.79445 1.15288 1.21423 1.22100 1.19932 0.97692 0.93313 0.95287 1.21756 0.93812 0.99422 0.99689 1.73226 1.00278 1.23338 1.21917 1.73026 0.99400 1.25870 1.01947 0.91257 0.84910 0.91382 0.80170 0.80978 0.74839 0.93465 0.93842 0.96208 0.97360 0.93005 0.93525 0.95246 0.92390 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -8.11 10.39 -56.28 -0.58 -8.69 16 3 C 0.54 14.10 7.94 70.34 0.56 14.66 16 4 O -0.52 -14.39 16.17 19.93 0.32 -14.07 16 5 C -0.05 -1.41 6.83 41.97 0.29 -1.13 16 6 C -0.01 -0.34 9.71 22.74 0.22 -0.12 16 7 C -0.19 -4.51 8.88 22.61 0.20 -4.31 16 8 C 0.37 10.05 7.71 133.22 1.03 11.08 16 9 N -0.68 -17.75 5.22 -324.36 -1.69 -19.45 16 10 C 0.17 4.87 2.05 44.97 0.09 4.96 16 11 H 0.09 2.47 6.47 -2.39 -0.02 2.45 16 12 C -0.11 -3.93 5.43 30.66 0.17 -3.76 16 13 C 0.01 0.48 5.93 30.11 0.18 0.66 16 14 C -0.50 -23.56 5.48 -16.17 -0.09 -23.65 16 15 C 0.02 1.07 5.44 84.65 0.46 1.53 16 16 N -0.93 -52.46 12.82 21.45 0.28 -52.19 16 17 Si 0.93 39.74 27.95 68.60 1.92 41.66 16 18 H -0.23 -8.71 5.58 99.48 0.56 -8.16 16 19 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 C -0.02 -0.93 5.65 30.11 0.17 -0.76 16 22 C -0.11 -3.36 5.40 30.66 0.17 -3.20 16 23 N -0.33 -10.02 11.55 -55.17 -0.64 -10.66 16 24 N -0.15 -4.66 11.30 -48.54 -0.55 -5.21 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.18 3.36 7.71 -2.91 -0.02 3.34 16 29 H 0.17 3.77 6.28 -2.91 -0.02 3.75 16 30 H 0.41 9.91 8.72 -92.71 -0.81 9.10 16 31 H 0.05 1.56 7.75 -2.39 -0.02 1.54 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.02 1.01 7.19 -2.38 -0.02 1.00 16 34 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 35 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 36 H 0.05 1.79 4.36 -2.39 -0.01 1.78 16 37 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -61.17 324.15 3.82 -57.35 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.13 Total: 13.71 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 4.64 Total: -2.45 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -2.60 Total: -87.51 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.26 Total: -22.76 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.92 Total: 41.66 kcal Total: -61.17 3.82 -57.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.279 kcal (2) G-P(sol) polarization free energy of solvation -61.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds