Wall clock time and date at job start Tue Mar 31 2020 07:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31594 * 1 3 3 Si 1.86809 * 119.99883 * 2 1 4 4 H 1.48495 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46717 * 299.99822 * 3 2 1 6 6 H 1.48498 * 109.46828 * 59.99821 * 3 2 1 7 7 C 1.38780 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99909 * 180.02562 * 7 2 1 9 9 N 1.36884 * 119.99775 * 0.02562 * 7 2 1 10 10 C 1.39026 * 119.99857 * 180.27730 * 9 7 2 11 11 C 1.39722 * 120.08106 * 359.44578 * 10 9 7 12 12 C 1.38308 * 117.96874 * 179.73847 * 11 10 9 13 13 C 1.39622 * 117.98046 * 0.52830 * 12 11 10 14 14 N 1.39195 * 120.07133 * 179.75259 * 13 12 11 15 15 C 1.46852 * 110.99643 * 304.18675 * 14 13 12 16 16 C 1.53037 * 109.52398 * 174.15968 * 15 14 13 17 17 C 1.53120 * 109.27922 * 59.17777 * 16 15 14 18 18 C 1.50692 * 109.52269 * 182.43887 * 17 16 15 19 19 N 1.34783 * 120.00355 * 299.68575 * 18 17 16 20 20 O 1.21284 * 119.99744 * 119.68201 * 18 17 16 21 21 C 1.53119 * 109.15781 * 302.34717 * 17 16 15 22 22 C 1.46847 * 111.00535 * 179.97438 * 14 13 12 23 23 N 1.32394 * 119.86744 * 359.72532 * 13 12 11 24 24 N 1.28351 * 122.17691 * 359.97438 * 23 13 12 25 25 H 0.96999 * 120.00192 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99795 * 359.97438 * 9 7 2 27 27 H 1.08005 * 121.01591 * 359.97438 * 11 10 9 28 28 H 1.08001 * 121.00887 * 180.25911 * 12 11 10 29 29 H 1.09003 * 109.46362 * 294.17590 * 15 14 13 30 30 H 1.09001 * 109.46300 * 54.14209 * 15 14 13 31 31 H 1.08995 * 109.50379 * 299.23777 * 16 15 14 32 32 H 1.09000 * 109.50126 * 179.11787 * 16 15 14 33 33 H 1.09004 * 109.51757 * 62.25071 * 17 16 15 34 34 H 0.96999 * 119.99280 * 359.97438 * 19 18 17 35 35 H 0.96995 * 119.99774 * 179.97438 * 19 18 17 36 36 H 1.08994 * 109.50646 * 297.70763 * 21 17 16 37 37 H 1.09009 * 109.49679 * 177.59228 * 21 17 16 38 38 H 1.09002 * 109.45808 * 305.84835 * 22 14 13 39 39 H 1.08997 * 109.46049 * 65.81909 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7099 1.3466 0.0006 5 1 1.8912 2.3964 -1.2126 6 1 1.8911 2.3965 1.2125 7 6 2.0099 -1.2018 0.0005 8 1 3.0899 -1.2017 0.0010 9 7 1.3255 -2.3873 0.0005 10 6 2.0207 -3.5913 0.0069 11 6 3.4179 -3.5932 0.0016 12 6 4.0649 -4.8156 0.0139 13 6 3.2816 -5.9713 0.0194 14 7 3.8874 -7.2245 0.0265 15 6 4.8109 -7.3689 -1.1061 16 6 5.5644 -8.6955 -0.9857 17 6 4.5579 -9.8493 -0.9733 18 6 5.2900 -11.1543 -0.7947 19 7 6.2086 -11.5413 -1.7019 20 8 5.0525 -11.8563 0.1653 21 6 3.5783 -9.6492 0.1864 22 6 2.8823 -8.2950 0.0320 23 7 1.9613 -5.8730 0.0184 24 7 1.3604 -4.7388 0.0130 25 1 -0.4850 0.8400 -0.0004 26 1 0.3555 -2.3873 0.0005 27 1 3.9757 -2.6684 -0.0078 28 1 5.1433 -4.8743 0.0147 29 1 4.2468 -7.3550 -2.0387 30 1 5.5239 -6.5445 -1.1009 31 1 6.1397 -8.7045 -0.0600 32 1 6.2383 -8.8096 -1.8348 33 1 4.0093 -9.8642 -1.9152 34 1 6.3982 -10.9800 -2.4698 35 1 6.6801 -12.3812 -1.5866 36 1 4.1223 -9.6732 1.1305 37 1 2.8331 -10.4447 0.1746 38 1 2.1947 -8.1432 0.8640 39 1 2.3272 -8.2768 -0.9058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163177785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:01 Heat of formation + Delta-G solvation = 25.069261 kcal Electronic energy + Delta-G solvation = -22573.981506 eV Core-core repulsion = 19130.665038 eV Total energy + Delta-G solvation = -3443.316468 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.49553 -39.75464 -38.01545 -35.73364 -34.12882 -33.40984 -32.33755 -31.42551 -30.71732 -28.60355 -25.83965 -24.54719 -24.04450 -22.43457 -21.81200 -20.86700 -19.69981 -18.16876 -17.73457 -17.06369 -16.86595 -16.55535 -16.06275 -15.20197 -14.80324 -14.66948 -14.48582 -14.13639 -13.75618 -13.58315 -13.43937 -13.19350 -12.99056 -12.53997 -12.24079 -11.80066 -11.61773 -11.47662 -11.19173 -10.99235 -10.77070 -10.63274 -10.58103 -10.52687 -10.24367 -9.97079 -9.92234 -9.58010 -9.20341 -8.66793 -8.24088 -7.05598 -6.76682 -3.97814 1.90653 2.16849 2.44682 3.03226 3.05494 3.09587 3.30277 3.83049 3.96218 4.45444 4.53524 4.60892 4.70118 4.77848 5.03619 5.09147 5.17983 5.34660 5.45318 5.51187 5.53439 5.56448 5.74222 5.75232 5.88356 5.93484 6.01485 6.07689 6.29348 6.35904 6.51726 6.53723 6.69660 6.94463 7.06686 7.07171 7.34897 7.53391 7.76180 8.04560 8.52288 9.03876 9.23921 10.05716 10.39180 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.047707 B = 0.002817 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.773150 B = 9935.956394 C =10345.524550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.307 4.307 8 H 0.105 0.895 9 N -0.518 5.518 10 C 0.287 3.713 11 C -0.176 4.176 12 C -0.084 4.084 13 C 0.114 3.886 14 N -0.460 5.460 15 C 0.059 3.941 16 C -0.105 4.105 17 C -0.111 4.111 18 C 0.523 3.477 19 N -0.859 5.859 20 O -0.542 6.542 21 C -0.098 4.098 22 C 0.068 3.932 23 N -0.226 5.226 24 N -0.338 5.338 25 H 0.279 0.721 26 H 0.408 0.592 27 H 0.137 0.863 28 H 0.127 0.873 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.401 0.599 35 H 0.399 0.601 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.432 -13.708 -5.549 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.438 4.438 8 H 0.123 0.877 9 N -0.127 5.127 10 C 0.038 3.962 11 C -0.212 4.212 12 C -0.114 4.114 13 C -0.130 4.130 14 N -0.182 5.182 15 C -0.069 4.069 16 C -0.143 4.143 17 C -0.133 4.133 18 C 0.309 3.691 19 N -0.422 5.422 20 O -0.418 6.418 21 C -0.136 4.136 22 C -0.060 4.060 23 N -0.074 5.074 24 N -0.198 5.198 25 H 0.089 0.911 26 H 0.244 0.756 27 H 0.155 0.845 28 H 0.145 0.855 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.229 0.771 35 H 0.229 0.771 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.838 -14.313 -4.435 18.493 hybrid contribution 1.305 1.637 -1.071 2.352 sum 12.143 -12.676 -5.506 18.397 Atomic orbital electron populations 1.69714 1.06108 1.29019 1.46406 1.25386 0.95810 1.00143 0.96608 0.85681 0.79351 0.80398 0.78247 1.19001 1.20288 1.20259 1.19774 0.93064 0.82140 1.48774 0.87723 1.40709 1.08875 1.00691 1.62396 1.19875 0.89805 0.88528 0.97945 1.21519 0.93840 0.98353 1.07441 1.21389 0.99831 0.91269 0.98891 1.20507 0.91233 0.90012 1.11256 1.59336 1.18315 1.00119 1.40415 1.22186 0.95583 0.97410 0.91744 1.21590 0.96879 0.92810 1.03010 1.21459 0.97718 0.91935 1.02159 1.20749 0.79046 0.87611 0.81742 1.43930 1.43632 1.26520 1.28148 1.90744 1.64935 1.55653 1.30427 1.21494 0.97733 0.96705 0.97700 1.21918 0.92928 0.88592 1.02531 1.72527 1.07758 1.18046 1.09028 1.72626 1.29524 0.92945 1.24724 0.91084 0.75614 0.84515 0.85473 0.94205 0.89972 0.90288 0.91071 0.88576 0.77094 0.77104 0.90320 0.90743 0.89252 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.66 13.05 55.49 0.72 -21.93 16 2 C 0.03 0.65 5.50 -17.45 -0.10 0.55 16 3 Si 0.94 18.68 29.55 -169.99 -5.02 13.66 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.31 -7.50 9.55 -15.10 -0.14 -7.65 16 8 H 0.11 2.38 5.70 -52.49 -0.30 2.08 16 9 N -0.52 -12.83 5.45 -11.02 -0.06 -12.89 16 10 C 0.29 6.69 7.71 -154.77 -1.19 5.49 16 11 C -0.18 -3.58 9.41 -39.00 -0.37 -3.95 16 12 C -0.08 -1.50 9.28 -39.04 -0.36 -1.87 16 13 C 0.11 2.13 6.48 -154.65 -1.00 1.13 16 14 N -0.46 -6.95 4.69 -173.01 -0.81 -7.76 16 15 C 0.06 0.68 5.25 -3.83 -0.02 0.66 16 16 C -0.10 -0.91 5.26 -26.65 -0.14 -1.05 16 17 C -0.11 -1.06 2.59 -91.65 -0.24 -1.29 16 18 C 0.52 5.30 7.43 -10.99 -0.08 5.22 16 19 N -0.86 -5.08 8.78 31.22 0.27 -4.80 16 20 O -0.54 -7.88 16.81 5.55 0.09 -7.78 16 21 C -0.10 -1.18 4.68 -26.65 -0.12 -1.31 16 22 C 0.07 0.97 4.66 -3.84 -0.02 0.96 16 23 N -0.23 -4.88 9.87 31.28 0.31 -4.57 16 24 N -0.34 -8.04 11.53 31.26 0.36 -7.68 16 25 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 26 H 0.41 10.54 8.01 -40.82 -0.33 10.21 16 27 H 0.14 2.60 6.05 -52.48 -0.32 2.28 16 28 H 0.13 1.83 7.21 -52.49 -0.38 1.45 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.89 6.73 -51.93 -0.35 0.54 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.41 7.66 -51.93 -0.40 0.01 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 1.24 8.32 -40.82 -0.34 0.91 16 35 H 0.40 2.00 8.93 -40.82 -0.36 1.64 16 36 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 37 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.09 1.44 7.72 -51.93 -0.40 1.04 16 39 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -30.43 322.23 -7.91 -38.33 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -4.84 Total: 13.68 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -3.79 Total: -3.11 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.80 Total: -59.63 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.43 -7.91 -38.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163177785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.403 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds