Wall clock time and date at job start Tue Mar 31 2020 07:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31594 * 1 3 3 Si 1.86809 * 119.99883 * 2 1 4 4 H 1.48495 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46717 * 299.99822 * 3 2 1 6 6 H 1.48498 * 109.46828 * 59.99821 * 3 2 1 7 7 C 1.38780 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99909 * 180.02562 * 7 2 1 9 9 N 1.36884 * 119.99775 * 0.02562 * 7 2 1 10 10 C 1.39026 * 119.99857 * 180.27730 * 9 7 2 11 11 C 1.39722 * 120.08106 * 359.44578 * 10 9 7 12 12 C 1.38308 * 117.96874 * 179.73847 * 11 10 9 13 13 C 1.39622 * 117.98046 * 0.52830 * 12 11 10 14 14 N 1.39195 * 120.07133 * 179.75259 * 13 12 11 15 15 C 1.46852 * 110.99643 * 304.18675 * 14 13 12 16 16 C 1.53037 * 109.52398 * 174.15968 * 15 14 13 17 17 C 1.53120 * 109.27922 * 59.17777 * 16 15 14 18 18 C 1.50692 * 109.52269 * 182.43887 * 17 16 15 19 19 N 1.34783 * 120.00355 * 299.68575 * 18 17 16 20 20 O 1.21284 * 119.99744 * 119.68201 * 18 17 16 21 21 C 1.53119 * 109.15781 * 302.34717 * 17 16 15 22 22 C 1.46847 * 111.00535 * 179.97438 * 14 13 12 23 23 N 1.32394 * 119.86744 * 359.72532 * 13 12 11 24 24 N 1.28351 * 122.17691 * 359.97438 * 23 13 12 25 25 H 0.96999 * 120.00192 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99795 * 359.97438 * 9 7 2 27 27 H 1.08005 * 121.01591 * 359.97438 * 11 10 9 28 28 H 1.08001 * 121.00887 * 180.25911 * 12 11 10 29 29 H 1.09003 * 109.46362 * 294.17590 * 15 14 13 30 30 H 1.09001 * 109.46300 * 54.14209 * 15 14 13 31 31 H 1.08995 * 109.50379 * 299.23777 * 16 15 14 32 32 H 1.09000 * 109.50126 * 179.11787 * 16 15 14 33 33 H 1.09004 * 109.51757 * 62.25071 * 17 16 15 34 34 H 0.96999 * 119.99280 * 359.97438 * 19 18 17 35 35 H 0.96995 * 119.99774 * 179.97438 * 19 18 17 36 36 H 1.08994 * 109.50646 * 297.70763 * 21 17 16 37 37 H 1.09009 * 109.49679 * 177.59228 * 21 17 16 38 38 H 1.09002 * 109.45808 * 305.84835 * 22 14 13 39 39 H 1.08997 * 109.46049 * 65.81909 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7099 1.3466 0.0006 5 1 1.8912 2.3964 -1.2126 6 1 1.8911 2.3965 1.2125 7 6 2.0099 -1.2018 0.0005 8 1 3.0899 -1.2017 0.0010 9 7 1.3255 -2.3873 0.0005 10 6 2.0207 -3.5913 0.0069 11 6 3.4179 -3.5932 0.0016 12 6 4.0649 -4.8156 0.0139 13 6 3.2816 -5.9713 0.0194 14 7 3.8874 -7.2245 0.0265 15 6 4.8109 -7.3689 -1.1061 16 6 5.5644 -8.6955 -0.9857 17 6 4.5579 -9.8493 -0.9733 18 6 5.2900 -11.1543 -0.7947 19 7 6.2086 -11.5413 -1.7019 20 8 5.0525 -11.8563 0.1653 21 6 3.5783 -9.6492 0.1864 22 6 2.8823 -8.2950 0.0320 23 7 1.9613 -5.8730 0.0184 24 7 1.3604 -4.7388 0.0130 25 1 -0.4850 0.8400 -0.0004 26 1 0.3555 -2.3873 0.0005 27 1 3.9757 -2.6684 -0.0078 28 1 5.1433 -4.8743 0.0147 29 1 4.2468 -7.3550 -2.0387 30 1 5.5239 -6.5445 -1.1009 31 1 6.1397 -8.7045 -0.0600 32 1 6.2383 -8.8096 -1.8348 33 1 4.0093 -9.8642 -1.9152 34 1 6.3982 -10.9800 -2.4698 35 1 6.6801 -12.3812 -1.5866 36 1 4.1223 -9.6732 1.1305 37 1 2.8331 -10.4447 0.1746 38 1 2.1947 -8.1432 0.8640 39 1 2.3272 -8.2768 -0.9058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163177785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:00 Heat of formation + Delta-G solvation = 1.853267 kcal Electronic energy + Delta-G solvation = -22574.988227 eV Core-core repulsion = 19130.665038 eV Total energy + Delta-G solvation = -3444.323189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.82326 -40.88768 -39.21626 -37.36290 -35.12839 -34.40042 -34.02497 -32.87420 -31.77056 -30.17057 -27.23669 -26.03667 -25.40145 -23.63604 -23.23301 -21.89266 -20.59698 -19.81524 -18.78335 -18.41913 -17.97325 -17.70766 -17.47701 -16.34330 -16.28482 -15.86822 -15.60244 -15.37436 -15.28190 -14.81839 -14.66723 -14.36494 -14.10414 -13.91072 -13.49759 -13.30728 -13.11056 -12.61168 -12.51123 -12.29997 -12.17492 -12.10175 -11.94536 -11.68128 -11.47245 -11.13757 -10.90018 -10.79236 -10.58348 -10.24925 -9.80491 -8.68981 -8.52654 -5.83062 0.28933 0.58065 1.44738 1.49594 1.59077 1.68098 2.21882 2.61349 2.64353 2.84708 3.07108 3.28981 3.67417 3.76331 3.89778 3.96457 4.09115 4.21927 4.29084 4.37593 4.41374 4.44798 4.57257 4.68517 4.75185 4.85077 4.93036 4.99124 5.12370 5.16944 5.20711 5.30195 5.37630 5.43311 5.77412 5.96686 6.09095 6.30445 6.52261 6.71670 7.30039 7.41397 7.42180 8.37915 8.66204 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.047707 B = 0.002817 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.773150 B = 9935.956394 C =10345.524550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.026 4.026 3 Si 1.007 2.993 4 H -0.248 1.248 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.321 4.321 8 H 0.119 0.881 9 N -0.548 5.548 10 C 0.278 3.722 11 C -0.178 4.178 12 C -0.072 4.072 13 C 0.137 3.863 14 N -0.463 5.463 15 C 0.053 3.947 16 C -0.095 4.095 17 C -0.107 4.107 18 C 0.525 3.475 19 N -0.835 5.835 20 O -0.593 6.593 21 C -0.090 4.090 22 C 0.073 3.927 23 N -0.260 5.260 24 N -0.375 5.375 25 H 0.278 0.722 26 H 0.393 0.607 27 H 0.152 0.848 28 H 0.175 0.825 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.418 0.582 35 H 0.407 0.593 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.442 -14.823 -6.968 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.227 4.227 3 Si 0.829 3.171 4 H -0.171 1.171 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.451 4.451 8 H 0.136 0.864 9 N -0.159 5.159 10 C 0.030 3.970 11 C -0.213 4.213 12 C -0.101 4.101 13 C -0.109 4.109 14 N -0.185 5.185 15 C -0.073 4.073 16 C -0.133 4.133 17 C -0.129 4.129 18 C 0.310 3.690 19 N -0.399 5.399 20 O -0.474 6.474 21 C -0.129 4.129 22 C -0.055 4.055 23 N -0.105 5.105 24 N -0.232 5.232 25 H 0.087 0.913 26 H 0.227 0.773 27 H 0.170 0.830 28 H 0.193 0.807 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.250 0.750 35 H 0.238 0.762 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.915 -15.510 -5.906 22.314 hybrid contribution 0.242 1.569 -0.643 1.713 sum 15.156 -13.941 -6.550 21.609 Atomic orbital electron populations 1.69841 1.07782 1.29552 1.49230 1.26342 0.96526 1.03353 0.96438 0.84648 0.78858 0.75890 0.77675 1.17128 1.20428 1.20615 1.20155 0.93711 0.82356 1.48877 0.86366 1.40734 1.08158 1.01318 1.65716 1.20264 0.91224 0.88217 0.97269 1.21794 0.92621 1.00131 1.06755 1.21850 1.02025 0.89645 0.96606 1.21102 0.90667 0.92131 1.06977 1.59376 1.18193 0.98536 1.42391 1.22405 0.95019 0.99869 0.90031 1.21595 0.96574 0.90397 1.04728 1.21417 0.97532 0.92326 1.01588 1.20759 0.79379 0.87303 0.81558 1.43721 1.41823 1.26819 1.27507 1.90738 1.66772 1.57109 1.32761 1.21352 0.98129 0.94933 0.98455 1.21833 0.92769 0.89621 1.01229 1.72503 1.09496 1.17285 1.11213 1.72571 1.30982 0.93644 1.26049 0.91300 0.77304 0.83005 0.80744 0.93901 0.88247 0.90802 0.86724 0.86595 0.75004 0.76205 0.91823 0.90953 0.91904 0.94221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.05 13.05 21.64 0.28 -49.77 16 2 C -0.03 -1.31 5.50 84.86 0.47 -0.84 16 3 Si 1.01 38.56 29.55 68.60 2.03 40.59 16 4 H -0.25 -8.63 7.11 99.48 0.71 -7.93 16 5 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 6 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 7 C -0.32 -15.99 9.55 84.03 0.80 -15.18 16 8 H 0.12 5.32 5.70 -2.91 -0.02 5.30 16 9 N -0.55 -28.22 5.45 -188.77 -1.03 -29.25 16 10 C 0.28 13.17 7.71 133.20 1.03 14.20 16 11 C -0.18 -6.95 9.41 22.65 0.21 -6.74 16 12 C -0.07 -2.33 9.28 22.62 0.21 -2.12 16 13 C 0.14 4.87 6.48 133.12 0.86 5.73 16 14 N -0.46 -12.81 4.69 -701.29 -3.29 -16.10 16 15 C 0.05 0.99 5.25 86.32 0.45 1.45 16 16 C -0.09 -1.19 5.26 30.65 0.16 -1.03 16 17 C -0.11 -1.68 2.59 -11.46 -0.03 -1.71 16 18 C 0.52 9.09 7.43 87.65 0.65 9.74 16 19 N -0.83 -6.54 8.78 -173.53 -1.52 -8.07 16 20 O -0.59 -16.48 16.81 -3.04 -0.05 -16.53 16 21 C -0.09 -2.06 4.68 30.64 0.14 -1.92 16 22 C 0.07 2.03 4.66 86.32 0.40 2.44 16 23 N -0.26 -11.27 9.87 -54.97 -0.54 -11.82 16 24 N -0.38 -18.30 11.53 -55.00 -0.63 -18.93 16 25 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 26 H 0.39 21.71 8.01 -92.71 -0.74 20.97 16 27 H 0.15 5.42 6.05 -2.91 -0.02 5.40 16 28 H 0.18 4.00 7.21 -2.91 -0.02 3.97 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 1.57 6.73 -2.39 -0.02 1.55 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 0.54 7.66 -2.39 -0.02 0.52 16 33 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.42 0.44 8.32 -92.71 -0.77 -0.33 16 35 H 0.41 2.65 8.93 -92.71 -0.83 1.82 16 36 H 0.06 1.66 8.04 -2.39 -0.02 1.64 16 37 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.06 2.07 7.72 -2.39 -0.02 2.05 16 39 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 Total: -1.00 -70.85 322.23 -0.61 -71.46 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: -1.22 Total: 34.40 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.36 Total: 4.01 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -6.73 Total: -133.94 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.05 Total: -16.53 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -70.85 -0.61 -71.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163177785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.312 kcal (2) G-P(sol) polarization free energy of solvation -70.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds