Wall clock time and date at job start Tue Mar 31 2020 07:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38675 * 119.27784 * 2 1 4 4 C 1.38016 * 119.62681 * 180.02562 * 3 2 1 5 5 C 1.40997 * 118.28200 * 359.97438 * 4 3 2 6 6 C 1.41018 * 120.70614 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00050 * 150.30798 * 6 5 4 8 8 C 1.39943 * 120.00042 * 330.30690 * 6 5 4 9 9 N 1.30869 * 120.00413 * 161.85860 * 8 6 5 10 10 Si 1.86806 * 119.99790 * 341.86243 * 8 6 5 11 11 H 1.48495 * 109.47356 * 95.39602 * 10 8 6 12 12 H 1.48505 * 109.46665 * 215.39730 * 10 8 6 13 13 H 1.48497 * 109.47150 * 335.39293 * 10 8 6 14 14 C 1.41710 * 118.58844 * 359.97438 * 5 4 3 15 15 N 1.38092 * 119.90399 * 179.97438 * 14 5 4 16 16 C 1.47477 * 110.99964 * 180.02562 * 15 14 5 17 17 C 1.53507 * 87.99826 * 138.66845 * 16 15 14 18 18 N 1.46898 * 114.17537 * 220.35567 * 17 16 15 19 19 C 1.47483 * 111.00205 * 275.97725 * 18 17 16 20 20 C 1.53519 * 87.92926 * 221.29208 * 19 18 17 21 21 F 1.39902 * 114.33875 * 139.68253 * 20 19 18 22 22 C 1.47478 * 111.00461 * 180.02562 * 18 17 16 23 23 C 1.47486 * 110.99748 * 275.97055 * 15 14 5 24 24 N 1.31978 * 119.27511 * 180.27109 * 2 1 3 25 25 H 1.08998 * 109.47060 * 90.00341 * 1 2 3 26 26 H 1.09002 * 109.47184 * 209.99869 * 1 2 3 27 27 H 1.08998 * 109.46866 * 329.99948 * 1 2 3 28 28 H 1.08000 * 120.18550 * 0.03933 * 3 2 1 29 29 H 1.08001 * 120.85732 * 180.02562 * 4 3 2 30 30 H 0.97001 * 120.00415 * 180.02562 * 9 8 6 31 31 H 1.09004 * 113.48137 * 253.46912 * 16 15 14 32 32 H 1.09007 * 113.47736 * 23.87742 * 16 15 14 33 33 H 1.08999 * 114.16920 * 87.65161 * 17 16 15 34 34 H 1.08992 * 113.47486 * 336.05566 * 19 18 17 35 35 H 1.09000 * 113.47480 * 106.52749 * 19 18 17 36 36 H 1.08995 * 114.17011 * 272.37775 * 20 19 18 37 37 H 1.09003 * 113.47616 * 253.47153 * 22 18 17 38 38 H 1.08998 * 113.47594 * 23.93888 * 22 18 17 39 39 H 1.08996 * 113.47507 * 336.06143 * 23 15 14 40 40 H 1.08994 * 113.47341 * 106.47224 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5653 1.2180 -0.0005 5 6 4.2409 -0.0195 -0.0005 6 6 5.6502 -0.0706 -0.0005 7 1 6.1604 -0.9021 0.4628 8 6 6.3876 0.9561 -0.6009 9 7 7.6539 1.1097 -0.3083 10 14 5.5643 2.1076 -1.8198 11 1 5.1148 3.3351 -1.1153 12 1 6.5317 2.4744 -2.8852 13 1 4.3921 1.4286 -2.4281 14 6 3.4737 -1.2110 0.0006 15 7 4.1073 -2.4379 0.0001 16 6 3.1266 -3.5393 0.0009 17 6 4.0218 -4.2654 -1.0130 18 7 3.2854 -4.9488 -2.0847 19 6 2.8397 -6.2859 -1.6503 20 6 3.2371 -6.8080 -3.0382 21 9 3.8607 -8.0603 -3.0263 22 6 4.2102 -5.6215 -3.0158 23 6 4.4755 -2.8420 -1.3697 24 7 2.1524 -1.1512 -0.0054 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6364 2.1398 0.0006 29 1 4.1136 2.1485 -0.0001 30 1 8.1649 1.8217 -0.7242 31 1 3.0509 -4.0528 0.9594 32 1 2.1547 -3.2556 -0.4031 33 1 4.7989 -4.8817 -0.5611 34 1 3.4402 -6.7022 -0.8415 35 1 1.7691 -6.3444 -1.4545 36 1 2.4502 -6.7261 -3.7879 37 1 4.3014 -5.1168 -3.9776 38 1 5.1763 -5.8606 -2.5713 39 1 3.8638 -2.3726 -2.1401 40 1 5.5434 -2.7634 -1.5733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163758778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:55 Heat of formation + Delta-G solvation = 67.083025 kcal Electronic energy + Delta-G solvation = -23326.125353 eV Core-core repulsion = 19864.710777 eV Total energy + Delta-G solvation = -3461.414576 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.75217 -40.68102 -39.10562 -37.42803 -34.20384 -31.93632 -31.37015 -28.92278 -27.98109 -26.46011 -25.68629 -25.05272 -23.45736 -21.61102 -20.68101 -20.21399 -19.39120 -17.50053 -17.06149 -16.65045 -15.85127 -15.73343 -15.53612 -14.96830 -14.77794 -14.09316 -13.76952 -13.63704 -13.38745 -13.35078 -12.87576 -12.79158 -12.51192 -12.41414 -12.04138 -12.02901 -11.62217 -11.51144 -11.31720 -11.07883 -10.81588 -10.53655 -10.49425 -10.28706 -10.03002 -9.97497 -9.50770 -9.11033 -8.90568 -8.40843 -8.17978 -7.37007 -7.09954 -4.54966 2.28357 2.54855 2.98693 3.08356 3.19070 3.80676 3.83762 3.90508 4.21277 4.35841 4.56094 4.63031 4.76190 5.15891 5.21628 5.24685 5.35901 5.42428 5.50329 5.54107 5.81638 5.82718 5.84116 5.96259 6.07567 6.09749 6.19940 6.24680 6.25804 6.34434 6.38184 6.47268 6.60862 6.73043 6.84854 6.96151 7.06298 7.37541 7.43213 7.71642 8.03792 8.25029 8.57816 8.62533 9.31277 9.90360 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.005018 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.797492 B = 5578.654368 C = 6717.342349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.007 4.007 3 C -0.125 4.125 4 C -0.208 4.208 5 C 0.059 3.941 6 C -0.410 4.410 7 H 0.104 0.896 8 C 0.082 3.918 9 N -0.794 5.794 10 Si 0.907 3.093 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.247 1.247 14 C 0.163 3.837 15 N -0.396 5.396 16 C 0.026 3.974 17 C 0.004 3.996 18 N -0.450 5.450 19 C -0.021 4.021 20 C 0.057 3.943 21 F -0.206 7.206 22 C -0.023 4.023 23 C 0.038 3.962 24 N -0.477 5.477 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.288 0.712 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.659 -8.602 -4.935 11.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.144 4.144 3 C -0.146 4.146 4 C -0.234 4.234 5 C 0.053 3.947 6 C -0.438 4.438 7 H 0.122 0.878 8 C -0.138 4.138 9 N -0.417 5.417 10 Si 0.734 3.266 11 H -0.194 1.194 12 H -0.214 1.214 13 H -0.170 1.170 14 C -0.074 4.074 15 N -0.116 5.116 16 C -0.104 4.104 17 C -0.105 4.105 18 N -0.173 5.173 19 C -0.150 4.150 20 C 0.020 3.980 21 F -0.187 7.187 22 C -0.152 4.152 23 C -0.090 4.090 24 N -0.189 5.189 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.807 -8.656 -4.616 11.940 hybrid contribution 0.488 1.039 -0.555 1.275 sum -6.319 -7.617 -5.170 11.166 Atomic orbital electron populations 1.20273 0.91205 1.01018 1.00570 1.20052 0.94777 0.87960 1.11646 1.21307 0.94655 0.97404 1.01188 1.21264 0.93765 0.97238 1.11093 1.18065 0.94366 0.90108 0.92205 1.19427 0.89321 1.06111 1.28987 0.87794 1.26245 0.94767 0.96379 0.96452 1.69704 1.08899 1.28284 1.34798 0.86361 0.79921 0.80288 0.80060 1.19428 1.21420 1.17023 1.19863 0.87393 0.91124 1.09002 1.66212 1.25126 0.99392 1.20863 1.23627 0.97493 0.91515 0.97723 1.24015 0.97136 0.95736 0.93624 1.69077 1.24317 1.12625 1.11281 1.24419 1.03669 0.90605 0.96337 1.23297 0.96431 0.78294 0.99930 1.92806 1.84136 1.44163 1.97571 1.24445 0.96601 0.93866 1.00333 1.23609 1.02029 0.91421 0.91930 1.66676 1.09691 1.29940 1.12546 0.93085 0.92502 0.92797 0.87876 0.87224 0.90185 0.91039 0.87980 0.89868 0.90088 0.88491 0.86088 0.88496 0.89965 0.90881 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.15 36.00 0.37 -0.86 16 2 C -0.01 -0.16 6.79 -82.37 -0.56 -0.72 16 3 C -0.13 -2.71 9.69 -39.50 -0.38 -3.10 16 4 C -0.21 -4.96 7.28 -38.62 -0.28 -5.24 16 5 C 0.06 1.49 5.12 -106.47 -0.55 0.94 16 6 C -0.41 -10.71 8.97 -37.89 -0.34 -11.05 16 7 H 0.10 2.90 7.86 -52.49 -0.41 2.49 16 8 C 0.08 2.06 5.42 -17.32 -0.09 1.97 16 9 N -0.79 -20.25 13.93 55.55 0.77 -19.48 16 10 Si 0.91 20.04 24.53 -169.99 -4.17 15.87 16 11 H -0.27 -5.74 6.70 56.52 0.38 -5.36 16 12 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.25 -5.68 6.85 56.52 0.39 -5.29 16 14 C 0.16 3.87 5.88 -155.02 -0.91 2.96 16 15 N -0.40 -8.47 5.72 -182.14 -1.04 -9.51 16 16 C 0.03 0.46 7.17 -7.61 -0.05 0.40 16 17 C 0.00 0.06 3.00 -67.42 -0.20 -0.14 16 18 N -0.45 -6.01 6.37 -236.36 -1.50 -7.52 16 19 C -0.02 -0.23 7.61 -7.59 -0.06 -0.29 16 20 C 0.06 0.58 6.02 -26.22 -0.16 0.42 16 21 F -0.21 -2.41 17.45 2.25 0.04 -2.37 16 22 C -0.02 -0.26 7.62 -7.62 -0.06 -0.32 16 23 C 0.04 0.72 7.25 -7.56 -0.05 0.67 16 24 N -0.48 -10.90 8.08 -8.11 -0.07 -10.96 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 28 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.11 2.56 4.80 -52.49 -0.25 2.31 16 30 H 0.29 6.63 8.30 -40.82 -0.34 6.29 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.10 1.98 6.65 -51.93 -0.35 1.64 16 33 H 0.08 1.22 7.89 -51.93 -0.41 0.81 16 34 H 0.08 0.87 7.84 -51.93 -0.41 0.46 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.92 7.81 -51.93 -0.41 0.52 16 39 H 0.07 1.48 7.89 -51.93 -0.41 1.07 16 40 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -27.72 326.86 -9.99 -37.71 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.61 Total: 5.68 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -3.33 Total: -14.35 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -1.84 Total: -47.47 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.17 Total: 15.87 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.72 -9.99 -37.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163758778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.792 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds