Wall clock time and date at job start Tue Mar 31 2020 07:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38675 * 119.27784 * 2 1 4 4 C 1.38016 * 119.62681 * 180.02562 * 3 2 1 5 5 C 1.40997 * 118.28200 * 359.97438 * 4 3 2 6 6 C 1.41018 * 120.70614 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00050 * 150.30798 * 6 5 4 8 8 C 1.39943 * 120.00042 * 330.30690 * 6 5 4 9 9 N 1.30869 * 120.00413 * 161.85860 * 8 6 5 10 10 Si 1.86806 * 119.99790 * 341.86243 * 8 6 5 11 11 H 1.48495 * 109.47356 * 95.39602 * 10 8 6 12 12 H 1.48505 * 109.46665 * 215.39730 * 10 8 6 13 13 H 1.48497 * 109.47150 * 335.39293 * 10 8 6 14 14 C 1.41710 * 118.58844 * 359.97438 * 5 4 3 15 15 N 1.38092 * 119.90399 * 179.97438 * 14 5 4 16 16 C 1.47477 * 110.99964 * 180.02562 * 15 14 5 17 17 C 1.53507 * 87.99826 * 138.66845 * 16 15 14 18 18 N 1.46898 * 114.17537 * 220.35567 * 17 16 15 19 19 C 1.47483 * 111.00205 * 275.97725 * 18 17 16 20 20 C 1.53519 * 87.92926 * 221.29208 * 19 18 17 21 21 F 1.39902 * 114.33875 * 139.68253 * 20 19 18 22 22 C 1.47478 * 111.00461 * 180.02562 * 18 17 16 23 23 C 1.47486 * 110.99748 * 275.97055 * 15 14 5 24 24 N 1.31978 * 119.27511 * 180.27109 * 2 1 3 25 25 H 1.08998 * 109.47060 * 90.00341 * 1 2 3 26 26 H 1.09002 * 109.47184 * 209.99869 * 1 2 3 27 27 H 1.08998 * 109.46866 * 329.99948 * 1 2 3 28 28 H 1.08000 * 120.18550 * 0.03933 * 3 2 1 29 29 H 1.08001 * 120.85732 * 180.02562 * 4 3 2 30 30 H 0.97001 * 120.00415 * 180.02562 * 9 8 6 31 31 H 1.09004 * 113.48137 * 253.46912 * 16 15 14 32 32 H 1.09007 * 113.47736 * 23.87742 * 16 15 14 33 33 H 1.08999 * 114.16920 * 87.65161 * 17 16 15 34 34 H 1.08992 * 113.47486 * 336.05566 * 19 18 17 35 35 H 1.09000 * 113.47480 * 106.52749 * 19 18 17 36 36 H 1.08995 * 114.17011 * 272.37775 * 20 19 18 37 37 H 1.09003 * 113.47616 * 253.47153 * 22 18 17 38 38 H 1.08998 * 113.47594 * 23.93888 * 22 18 17 39 39 H 1.08996 * 113.47507 * 336.06143 * 23 15 14 40 40 H 1.08994 * 113.47341 * 106.47224 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5653 1.2180 -0.0005 5 6 4.2409 -0.0195 -0.0005 6 6 5.6502 -0.0706 -0.0005 7 1 6.1604 -0.9021 0.4628 8 6 6.3876 0.9561 -0.6009 9 7 7.6539 1.1097 -0.3083 10 14 5.5643 2.1076 -1.8198 11 1 5.1148 3.3351 -1.1153 12 1 6.5317 2.4744 -2.8852 13 1 4.3921 1.4286 -2.4281 14 6 3.4737 -1.2110 0.0006 15 7 4.1073 -2.4379 0.0001 16 6 3.1266 -3.5393 0.0009 17 6 4.0218 -4.2654 -1.0130 18 7 3.2854 -4.9488 -2.0847 19 6 2.8397 -6.2859 -1.6503 20 6 3.2371 -6.8080 -3.0382 21 9 3.8607 -8.0603 -3.0263 22 6 4.2102 -5.6215 -3.0158 23 6 4.4755 -2.8420 -1.3697 24 7 2.1524 -1.1512 -0.0054 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6364 2.1398 0.0006 29 1 4.1136 2.1485 -0.0001 30 1 8.1649 1.8217 -0.7242 31 1 3.0509 -4.0528 0.9594 32 1 2.1547 -3.2556 -0.4031 33 1 4.7989 -4.8817 -0.5611 34 1 3.4402 -6.7022 -0.8415 35 1 1.7691 -6.3444 -1.4545 36 1 2.4502 -6.7261 -3.7879 37 1 4.3014 -5.1168 -3.9776 38 1 5.1763 -5.8606 -2.5713 39 1 3.8638 -2.3726 -2.1401 40 1 5.5434 -2.7634 -1.5733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163758778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:54 Heat of formation + Delta-G solvation = 47.769178 kcal Electronic energy + Delta-G solvation = -23326.962865 eV Core-core repulsion = 19864.710777 eV Total energy + Delta-G solvation = -3462.252088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.62545 -42.13277 -40.45699 -38.91475 -36.04001 -33.65264 -33.05666 -30.26017 -29.62733 -27.55034 -27.06547 -26.37836 -25.14196 -23.29820 -22.20148 -21.27398 -20.79448 -19.38147 -18.39645 -17.56619 -17.54178 -17.24507 -16.70034 -16.28066 -16.18113 -15.49806 -15.39865 -15.20398 -14.73774 -14.64008 -14.29298 -14.06494 -13.92234 -13.68277 -13.64093 -13.44861 -13.12592 -12.99314 -12.84430 -12.59838 -12.35449 -12.11002 -11.91739 -11.49287 -11.48141 -11.34427 -11.30795 -10.60205 -10.21461 -10.13234 -9.93936 -9.11965 -8.96472 -6.47205 0.50419 0.71765 1.20021 1.32288 1.41088 2.04087 2.53532 2.72029 2.95711 3.16431 3.28860 3.36892 3.46458 3.76469 3.89200 4.06278 4.14786 4.20443 4.33778 4.44011 4.51100 4.55159 4.58373 4.64790 4.69579 4.73772 4.77012 4.87383 4.90363 4.95603 4.99552 5.06173 5.14606 5.16143 5.20988 5.28588 5.61247 5.65423 5.90592 5.98489 6.18038 6.33015 6.69137 6.79093 7.52323 8.10149 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.005018 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.797492 B = 5578.654368 C = 6717.342349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.001 4.001 3 C -0.134 4.134 4 C -0.216 4.216 5 C 0.034 3.966 6 C -0.439 4.439 7 H 0.067 0.933 8 C 0.051 3.949 9 N -0.834 5.834 10 Si 0.959 3.041 11 H -0.253 1.253 12 H -0.273 1.273 13 H -0.263 1.263 14 C 0.156 3.844 15 N -0.423 5.423 16 C 0.030 3.970 17 C 0.035 3.965 18 N -0.465 5.465 19 C -0.021 4.021 20 C 0.071 3.929 21 F -0.213 7.213 22 C -0.028 4.028 23 C 0.040 3.960 24 N -0.488 5.488 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.142 0.858 29 H 0.112 0.888 30 H 0.296 0.704 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.144 0.856 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 -8.762 -5.834 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.138 4.138 3 C -0.154 4.154 4 C -0.242 4.242 5 C 0.028 3.972 6 C -0.469 4.469 7 H 0.085 0.915 8 C -0.165 4.165 9 N -0.459 5.459 10 Si 0.782 3.218 11 H -0.178 1.178 12 H -0.199 1.199 13 H -0.187 1.187 14 C -0.079 4.079 15 N -0.143 5.143 16 C -0.099 4.099 17 C -0.075 4.075 18 N -0.188 5.188 19 C -0.150 4.150 20 C 0.034 3.966 21 F -0.194 7.194 22 C -0.157 4.157 23 C -0.088 4.088 24 N -0.200 5.200 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.160 0.840 29 H 0.130 0.870 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.162 0.838 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.471 -8.836 -5.510 14.076 hybrid contribution 1.112 0.995 -0.231 1.510 sum -8.358 -7.842 -5.741 12.818 Atomic orbital electron populations 1.20383 0.87414 1.02754 1.02209 1.21055 0.97374 0.87543 1.07869 1.21735 0.93911 0.99289 1.00464 1.21480 0.95097 0.96788 1.10857 1.18284 0.94230 0.91493 0.93213 1.19194 0.90026 1.06131 1.31513 0.91504 1.26787 0.95105 0.97331 0.97284 1.69723 1.09928 1.29771 1.36473 0.85585 0.78689 0.78954 0.78524 1.17846 1.19918 1.18735 1.20163 0.87908 0.91765 1.08055 1.66140 1.26321 0.99531 1.22271 1.23581 0.96669 0.90735 0.98877 1.23727 0.96355 0.94215 0.93186 1.69056 1.24651 1.14196 1.10929 1.24501 1.04496 0.88921 0.97052 1.23310 0.96114 0.77271 0.99890 1.92797 1.84379 1.44650 1.97590 1.24537 0.96665 0.94366 1.00091 1.23490 1.01032 0.93897 0.90343 1.66875 1.09101 1.30757 1.13292 0.91331 0.91963 0.89948 0.84048 0.87045 0.89320 0.90189 0.89083 0.88873 0.89797 0.87191 0.83822 0.87811 0.89991 0.92544 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.06 10.15 71.24 0.72 -1.34 16 2 C 0.00 -0.02 6.79 42.64 0.29 0.27 16 3 C -0.13 -5.48 9.69 22.32 0.22 -5.26 16 4 C -0.22 -10.21 7.28 22.89 0.17 -10.04 16 5 C 0.03 1.75 5.12 -21.06 -0.11 1.64 16 6 C -0.44 -24.21 8.97 23.37 0.21 -24.00 16 7 H 0.07 4.04 7.86 -2.91 -0.02 4.02 16 8 C 0.05 2.68 5.42 85.25 0.46 3.14 16 9 N -0.83 -44.28 13.93 21.83 0.30 -43.97 16 10 Si 0.96 41.64 24.53 68.60 1.68 43.32 16 11 H -0.25 -10.28 6.70 99.48 0.67 -9.62 16 12 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 13 H -0.26 -11.97 6.85 99.48 0.68 -11.29 16 14 C 0.16 7.56 5.88 134.05 0.79 8.34 16 15 N -0.42 -18.60 5.72 -730.18 -4.18 -22.78 16 16 C 0.03 1.08 7.17 83.54 0.60 1.68 16 17 C 0.03 1.06 3.00 45.38 0.14 1.20 16 18 N -0.47 -11.74 6.37 -901.71 -5.74 -17.49 16 19 C -0.02 -0.41 7.61 83.54 0.64 0.23 16 20 C 0.07 1.25 6.02 30.93 0.19 1.43 16 21 F -0.21 -4.51 17.45 44.97 0.78 -3.72 16 22 C -0.03 -0.58 7.62 83.53 0.64 0.06 16 23 C 0.04 1.58 7.25 83.56 0.61 2.18 16 24 N -0.49 -21.86 8.08 -179.57 -1.45 -23.31 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.08 1.99 8.07 -2.39 -0.02 1.97 16 28 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 29 H 0.11 5.13 4.80 -2.91 -0.01 5.11 16 30 H 0.30 14.07 8.30 -92.71 -0.77 13.30 16 31 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 32 H 0.09 3.48 6.65 -2.38 -0.02 3.46 16 33 H 0.09 2.67 7.89 -2.39 -0.02 2.65 16 34 H 0.08 1.62 7.84 -2.39 -0.02 1.60 16 35 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.08 1.73 7.81 -2.39 -0.02 1.72 16 39 H 0.06 2.36 7.89 -2.39 -0.02 2.34 16 40 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -61.87 326.86 -2.07 -63.95 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.98 Total: 24.48 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 5.55 Total: -20.47 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -11.07 Total: -107.55 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.78 Total: -3.72 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.68 Total: 43.32 kcal Total: -61.87 -2.07 -63.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163758778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.714 kcal (2) G-P(sol) polarization free energy of solvation -61.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds