Wall clock time and date at job start Tue Mar 31 2020 06:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35623 * 116.99946 * 2 1 4 4 C 1.39153 * 120.50248 * 0.22741 * 3 2 1 5 5 C 1.38306 * 118.62980 * 180.28584 * 4 3 2 6 6 C 1.39947 * 119.59082 * 359.73510 * 5 4 3 7 7 N 1.38909 * 119.49196 * 179.97438 * 6 5 4 8 8 C 1.46494 * 120.00282 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.47113 * 180.02562 * 8 7 6 10 10 H 1.08999 * 110.21909 * 296.93093 * 9 8 7 11 11 C 1.54480 * 110.24246 * 175.00472 * 9 8 7 12 12 C 1.54636 * 101.76021 * 215.58384 * 11 9 8 13 13 C 1.51274 * 104.19536 * 24.79712 * 12 11 9 14 14 O 1.21278 * 124.94072 * 163.70761 * 13 12 11 15 15 N 1.34415 * 110.11935 * 343.75007 * 13 12 11 16 16 N 1.31866 * 121.00976 * 0.02562 * 6 5 4 17 17 C 1.33820 * 121.47168 * 359.97438 * 16 6 5 18 18 C 1.40915 * 119.84833 * 180.02562 * 17 16 6 19 19 H 1.08003 * 119.99559 * 189.03372 * 18 17 16 20 20 C 1.40024 * 120.00310 * 9.03016 * 18 17 16 21 21 N 1.30774 * 120.00196 * 195.85627 * 20 18 17 22 22 Si 1.86798 * 119.99716 * 15.85254 * 20 18 17 23 23 H 1.48508 * 109.47122 * 270.00038 * 22 20 18 24 24 H 1.48498 * 109.47122 * 150.00210 * 22 20 18 25 25 H 1.48506 * 109.47146 * 29.99987 * 22 20 18 26 26 H 1.09002 * 109.47527 * 59.99779 * 1 2 3 27 27 H 1.08999 * 109.47076 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47264 * 299.99490 * 1 2 3 29 29 H 1.08002 * 120.68942 * 359.97438 * 4 3 2 30 30 H 1.07999 * 120.20854 * 179.70213 * 5 4 3 31 31 H 0.97006 * 119.99345 * 180.02562 * 7 6 5 32 32 H 1.08991 * 109.47466 * 300.00507 * 8 7 6 33 33 H 1.09008 * 109.46724 * 60.00549 * 8 7 6 34 34 H 1.09000 * 110.97029 * 333.70259 * 11 9 8 35 35 H 1.09003 * 110.97177 * 97.43465 * 11 9 8 36 36 H 1.09004 * 110.48500 * 143.47858 * 12 11 9 37 37 H 1.09001 * 110.48600 * 266.11954 * 12 11 9 38 38 H 0.97001 * 124.35294 * 179.59466 * 15 13 12 39 39 H 0.96999 * 120.00457 * 354.79117 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 0.0048 5 6 1.9649 3.5932 -0.0015 6 6 3.3642 3.6108 -0.0067 7 7 4.0328 4.8283 -0.0135 8 6 3.2734 6.0811 -0.0146 9 6 4.2425 7.2650 -0.0231 10 1 4.8437 7.2663 0.8861 11 6 3.4633 8.5927 -0.1506 12 6 4.4200 9.4371 -1.0242 13 6 5.2302 8.4110 -1.7852 14 8 5.8926 8.6436 -2.7741 15 7 5.1084 7.2040 -1.2066 16 7 4.0577 2.4892 -0.0063 17 6 3.4544 1.2947 -0.0004 18 6 4.2291 0.1177 0.0004 19 1 3.7538 -0.8417 -0.1417 20 6 5.6151 0.1918 0.1854 21 7 6.3708 -0.8319 -0.1164 22 14 6.3846 1.7531 0.8633 23 1 6.7360 2.6596 -0.2594 24 1 7.6123 1.4096 1.6249 25 1 5.4174 2.4315 1.7631 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.2176 2.3480 0.0081 30 1 1.4099 4.5197 -0.0028 31 1 5.0026 4.8490 -0.0175 32 1 2.6420 6.1224 -0.9020 33 1 2.6493 6.1284 0.8779 34 1 2.5091 8.4382 -0.6544 35 1 3.3164 9.0542 0.8259 36 1 3.8540 10.0639 -1.7133 37 1 5.0698 10.0478 -0.3974 38 1 5.5377 6.3963 -1.5295 39 1 5.9660 -1.6677 -0.3965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164164026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:18 Heat of formation + Delta-G solvation = -48.789527 kcal Electronic energy + Delta-G solvation = -22941.581559 eV Core-core repulsion = 19462.769582 eV Total energy + Delta-G solvation = -3478.811977 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52194 -39.20456 -37.51576 -36.75903 -34.76428 -33.41408 -31.50466 -30.92711 -30.05431 -28.07021 -26.55028 -25.06012 -24.13575 -21.93146 -21.37920 -20.83845 -20.20467 -18.36205 -17.59076 -17.02306 -16.81162 -16.36240 -15.67330 -15.10817 -14.83828 -14.61167 -14.28787 -13.88221 -13.72599 -13.60227 -13.43009 -13.10754 -12.87265 -12.51159 -12.30729 -12.18375 -12.07535 -11.88548 -11.48972 -11.34071 -10.92562 -10.74524 -10.58524 -10.14168 -9.99623 -9.67823 -9.26966 -9.17662 -8.76158 -8.53622 -7.89086 -7.29872 -6.65823 -4.62669 2.47376 2.56080 2.76981 3.17670 3.49197 3.59630 3.66945 3.93325 4.17186 4.19908 4.32397 4.42846 4.50885 4.59926 4.82181 4.90518 5.10012 5.36640 5.40819 5.51098 5.58454 5.63315 5.65346 5.71903 5.74765 5.84808 5.92108 6.11166 6.34725 6.42851 6.65082 6.89807 6.96587 7.13021 7.35595 7.50616 7.79757 7.95990 8.08329 8.12291 8.32588 8.50216 8.82393 9.55025 9.97531 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.004737 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.033864 B = 5908.967949 C = 7224.274569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C -0.064 4.064 4 C -0.104 4.104 5 C -0.343 4.343 6 C 0.417 3.583 7 N -0.744 5.744 8 C 0.133 3.867 9 C 0.118 3.882 10 H 0.090 0.910 11 C -0.124 4.124 12 C -0.155 4.155 13 C 0.518 3.482 14 O -0.539 6.539 15 N -0.724 5.724 16 N -0.601 5.601 17 C 0.282 3.718 18 C -0.456 4.456 19 H 0.090 0.910 20 C 0.047 3.953 21 N -0.798 5.798 22 Si 1.146 2.854 23 H -0.288 1.288 24 H -0.329 1.329 25 H -0.279 1.279 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.393 0.607 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.414 0.586 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 14.835 3.088 16.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.224 6.224 3 C -0.111 4.111 4 C -0.128 4.128 5 C -0.370 4.370 6 C 0.182 3.818 7 N -0.382 5.382 8 C 0.006 3.994 9 C 0.012 3.988 10 H 0.108 0.892 11 C -0.163 4.163 12 C -0.196 4.196 13 C 0.304 3.696 14 O -0.416 6.416 15 N -0.380 5.380 16 N -0.330 5.330 17 C 0.157 3.843 18 C -0.488 4.488 19 H 0.109 0.891 20 C -0.175 4.175 21 N -0.420 5.420 22 Si 0.979 3.021 23 H -0.215 1.215 24 H -0.262 1.262 25 H -0.206 1.206 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.227 0.773 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.254 0.746 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.109 15.550 2.904 16.624 hybrid contribution -2.356 -1.177 -0.576 2.696 sum -7.464 14.373 2.328 16.362 Atomic orbital electron populations 1.22731 0.81661 1.01876 0.99798 1.85938 1.18229 1.27531 1.90674 1.19706 0.92927 0.83425 1.15074 1.20750 0.97671 0.92160 1.02262 1.20164 0.91919 0.96738 1.28135 1.17967 0.88194 0.84846 0.90802 1.44068 1.07710 1.01867 1.84531 1.21513 0.93667 0.82072 1.02103 1.22013 0.91981 0.95751 0.89055 0.89187 1.22636 0.98660 0.93385 1.01606 1.22344 0.99040 0.98099 1.00070 1.20891 0.80843 0.84444 0.83425 1.90762 1.42787 1.82335 1.25700 1.46402 1.50685 1.11413 1.29532 1.66373 1.36866 0.96850 1.32887 1.17641 0.86581 0.90068 0.90006 1.20660 0.94079 0.93718 1.40383 0.89149 1.27749 0.94368 1.04720 0.90671 1.70615 1.40141 1.03661 1.27533 0.82089 0.71691 0.71479 0.76811 1.21509 1.26179 1.20566 0.94297 0.89923 0.94236 0.87664 0.88157 0.77307 0.91849 0.91029 0.89386 0.88707 0.87972 0.87746 0.74627 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.83 101.05 0.99 1.58 16 2 O -0.31 -7.05 9.63 -18.57 -0.18 -7.23 16 3 C -0.06 -1.54 6.74 -38.11 -0.26 -1.80 16 4 C -0.10 -2.20 9.12 -39.22 -0.36 -2.55 16 5 C -0.34 -6.93 9.33 -38.92 -0.36 -7.29 16 6 C 0.42 8.90 7.65 -155.26 -1.19 7.71 16 7 N -0.74 -12.26 5.51 -60.35 -0.33 -12.59 16 8 C 0.13 1.53 4.52 -4.04 -0.02 1.51 16 9 C 0.12 1.04 3.62 -67.01 -0.24 0.80 16 10 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 11 C -0.12 -0.75 6.69 -25.09 -0.17 -0.92 16 12 C -0.16 -1.16 6.86 -26.74 -0.18 -1.34 16 13 C 0.52 6.36 8.43 -10.87 -0.09 6.27 16 14 O -0.54 -9.09 18.03 5.56 0.10 -8.99 16 15 N -0.72 -8.18 5.73 -52.77 -0.30 -8.48 16 16 N -0.60 -14.93 5.06 -10.20 -0.05 -14.98 16 17 C 0.28 7.46 6.28 -84.85 -0.53 6.93 16 18 C -0.46 -12.64 9.29 -37.90 -0.35 -12.99 16 19 H 0.09 2.58 7.55 -52.48 -0.40 2.18 16 20 C 0.05 1.29 5.51 -17.33 -0.10 1.19 16 21 N -0.80 -21.75 13.65 55.55 0.76 -21.00 16 22 Si 1.15 27.55 25.93 -169.99 -4.41 23.15 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.33 -7.81 7.11 56.52 0.40 -7.41 16 25 H -0.28 -6.71 6.55 56.52 0.37 -6.34 16 26 H 0.04 0.59 7.70 -51.93 -0.40 0.19 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.59 7.68 -51.93 -0.40 0.19 16 29 H 0.11 1.89 6.44 -52.49 -0.34 1.56 16 30 H 0.10 1.72 6.67 -52.49 -0.35 1.37 16 31 H 0.39 6.37 8.02 -40.82 -0.33 6.04 16 32 H 0.06 0.76 7.86 -51.93 -0.41 0.35 16 33 H 0.07 0.76 7.92 -51.92 -0.41 0.35 16 34 H 0.09 0.50 7.88 -51.93 -0.41 0.09 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.41 5.16 8.31 -40.82 -0.34 4.82 16 39 H 0.29 7.49 8.73 -40.82 -0.36 7.14 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -33.11 323.61 -7.47 -40.57 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.07 Total: 5.59 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.86 Total: -0.92 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.07 Total: -57.04 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.08 Total: -16.23 kcal Atomic # 14 Polarization: 27.55 SS G_CDS: -4.41 Total: 23.15 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.11 -7.47 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164164026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.216 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds