Wall clock time and date at job start Tue Mar 31 2020 06:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35623 * 116.99946 * 2 1 4 4 C 1.39153 * 120.50248 * 0.22741 * 3 2 1 5 5 C 1.38306 * 118.62980 * 180.28584 * 4 3 2 6 6 C 1.39947 * 119.59082 * 359.73510 * 5 4 3 7 7 N 1.38909 * 119.49196 * 179.97438 * 6 5 4 8 8 C 1.46494 * 120.00282 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.47113 * 180.02562 * 8 7 6 10 10 H 1.08999 * 110.21909 * 296.93093 * 9 8 7 11 11 C 1.54480 * 110.24246 * 175.00472 * 9 8 7 12 12 C 1.54636 * 101.76021 * 215.58384 * 11 9 8 13 13 C 1.51274 * 104.19536 * 24.79712 * 12 11 9 14 14 O 1.21278 * 124.94072 * 163.70761 * 13 12 11 15 15 N 1.34415 * 110.11935 * 343.75007 * 13 12 11 16 16 N 1.31866 * 121.00976 * 0.02562 * 6 5 4 17 17 C 1.33820 * 121.47168 * 359.97438 * 16 6 5 18 18 C 1.40915 * 119.84833 * 180.02562 * 17 16 6 19 19 H 1.08003 * 119.99559 * 189.03372 * 18 17 16 20 20 C 1.40024 * 120.00310 * 9.03016 * 18 17 16 21 21 N 1.30774 * 120.00196 * 195.85627 * 20 18 17 22 22 Si 1.86798 * 119.99716 * 15.85254 * 20 18 17 23 23 H 1.48508 * 109.47122 * 270.00038 * 22 20 18 24 24 H 1.48498 * 109.47122 * 150.00210 * 22 20 18 25 25 H 1.48506 * 109.47146 * 29.99987 * 22 20 18 26 26 H 1.09002 * 109.47527 * 59.99779 * 1 2 3 27 27 H 1.08999 * 109.47076 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47264 * 299.99490 * 1 2 3 29 29 H 1.08002 * 120.68942 * 359.97438 * 4 3 2 30 30 H 1.07999 * 120.20854 * 179.70213 * 5 4 3 31 31 H 0.97006 * 119.99345 * 180.02562 * 7 6 5 32 32 H 1.08991 * 109.47466 * 300.00507 * 8 7 6 33 33 H 1.09008 * 109.46724 * 60.00549 * 8 7 6 34 34 H 1.09000 * 110.97029 * 333.70259 * 11 9 8 35 35 H 1.09003 * 110.97177 * 97.43465 * 11 9 8 36 36 H 1.09004 * 110.48500 * 143.47858 * 12 11 9 37 37 H 1.09001 * 110.48600 * 266.11954 * 12 11 9 38 38 H 0.97001 * 124.35294 * 179.59466 * 15 13 12 39 39 H 0.96999 * 120.00457 * 354.79117 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 0.0048 5 6 1.9649 3.5932 -0.0015 6 6 3.3642 3.6108 -0.0067 7 7 4.0328 4.8283 -0.0135 8 6 3.2734 6.0811 -0.0146 9 6 4.2425 7.2650 -0.0231 10 1 4.8437 7.2663 0.8861 11 6 3.4633 8.5927 -0.1506 12 6 4.4200 9.4371 -1.0242 13 6 5.2302 8.4110 -1.7852 14 8 5.8926 8.6436 -2.7741 15 7 5.1084 7.2040 -1.2066 16 7 4.0577 2.4892 -0.0063 17 6 3.4544 1.2947 -0.0004 18 6 4.2291 0.1177 0.0004 19 1 3.7538 -0.8417 -0.1417 20 6 5.6151 0.1918 0.1854 21 7 6.3708 -0.8319 -0.1164 22 14 6.3846 1.7531 0.8633 23 1 6.7360 2.6596 -0.2594 24 1 7.6123 1.4096 1.6249 25 1 5.4174 2.4315 1.7631 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.2176 2.3480 0.0081 30 1 1.4099 4.5197 -0.0028 31 1 5.0026 4.8490 -0.0175 32 1 2.6420 6.1224 -0.9020 33 1 2.6493 6.1284 0.8779 34 1 2.5091 8.4382 -0.6544 35 1 3.3164 9.0542 0.8259 36 1 3.8540 10.0639 -1.7133 37 1 5.0698 10.0478 -0.3974 38 1 5.5377 6.3963 -1.5295 39 1 5.9660 -1.6677 -0.3965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164164026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:17 Heat of formation + Delta-G solvation = -74.079010 kcal Electronic energy + Delta-G solvation = -22942.678193 eV Core-core repulsion = 19462.769582 eV Total energy + Delta-G solvation = -3479.908611 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40057 -40.87553 -38.95139 -37.96334 -36.30401 -35.10925 -32.71525 -32.17467 -31.44538 -29.31931 -28.03802 -26.75933 -25.07637 -23.50393 -22.31636 -22.15081 -21.30938 -20.28667 -18.76865 -18.44288 -17.97188 -17.49301 -17.22974 -16.41225 -16.16477 -15.82087 -15.66301 -15.33411 -15.24321 -14.82179 -14.63645 -14.24289 -14.12350 -13.88191 -13.69071 -13.39504 -13.36426 -13.25420 -12.76673 -12.36361 -12.24709 -12.15610 -11.90502 -11.86827 -11.56154 -11.09553 -10.94709 -10.35809 -10.25356 -10.15885 -9.76344 -9.27250 -8.30955 -6.57489 0.73707 1.01930 1.53588 1.57340 1.70456 1.98595 2.25150 2.42862 2.53510 2.68790 2.92852 3.47556 3.53722 3.63887 3.83887 4.13354 4.21881 4.24494 4.34709 4.44676 4.46996 4.49625 4.63842 4.69313 4.73591 4.75373 4.90196 4.92744 5.14622 5.25260 5.31292 5.42615 5.54595 5.67983 5.79136 5.98644 6.03001 6.07863 6.49468 6.61125 6.73199 7.11077 7.19644 7.75411 7.97220 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.004737 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.033864 B = 5908.967949 C = 7224.274569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.344 6.344 3 C -0.091 4.091 4 C -0.095 4.095 5 C -0.317 4.317 6 C 0.398 3.602 7 N -0.738 5.738 8 C 0.127 3.873 9 C 0.119 3.881 10 H 0.105 0.895 11 C -0.110 4.110 12 C -0.145 4.145 13 C 0.505 3.495 14 O -0.598 6.598 15 N -0.729 5.729 16 N -0.617 5.617 17 C 0.262 3.738 18 C -0.501 4.501 19 H 0.060 0.940 20 C 0.018 3.982 21 N -0.830 5.830 22 Si 1.185 2.815 23 H -0.283 1.283 24 H -0.327 1.327 25 H -0.280 1.280 26 H 0.053 0.947 27 H 0.106 0.894 28 H 0.056 0.944 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.393 0.607 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.403 0.597 39 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.432 18.830 4.354 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.259 6.259 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.342 4.342 6 C 0.161 3.839 7 N -0.374 5.374 8 C 0.003 3.997 9 C 0.014 3.986 10 H 0.123 0.877 11 C -0.148 4.148 12 C -0.185 4.185 13 C 0.293 3.707 14 O -0.479 6.479 15 N -0.382 5.382 16 N -0.346 5.346 17 C 0.136 3.864 18 C -0.534 4.534 19 H 0.078 0.922 20 C -0.198 4.198 21 N -0.454 5.454 22 Si 1.015 2.985 23 H -0.210 1.210 24 H -0.260 1.260 25 H -0.207 1.207 26 H 0.071 0.929 27 H 0.124 0.876 28 H 0.074 0.926 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.227 0.773 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.147 0.853 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.241 0.759 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.000 19.588 4.197 21.571 hybrid contribution -1.777 -2.192 -0.981 2.988 sum -9.777 17.396 3.216 20.213 Atomic orbital electron populations 1.23074 0.78495 1.04098 1.01112 1.85891 1.21587 1.27482 1.90924 1.19812 0.92587 0.85071 1.16424 1.21226 0.99601 0.91195 0.99938 1.20755 0.91666 0.98223 1.23593 1.18452 0.89335 0.85450 0.90618 1.44321 1.08129 1.01857 1.83089 1.21864 0.94178 0.80519 1.03164 1.22222 0.91704 0.96180 0.88478 0.87696 1.22714 0.97954 0.90981 1.03173 1.22390 0.98935 0.97094 1.00082 1.21815 0.80401 0.85610 0.82843 1.90725 1.45433 1.83336 1.28425 1.46647 1.50526 1.10931 1.30096 1.66271 1.38134 0.97522 1.32683 1.17777 0.88152 0.90202 0.90306 1.20469 0.94707 0.93466 1.44806 0.92190 1.28569 0.94715 1.06181 0.90362 1.70652 1.40045 1.03993 1.30727 0.81587 0.70977 0.69518 0.76390 1.20960 1.26013 1.20747 0.92880 0.87604 0.92588 0.83881 0.83798 0.77340 0.91619 0.88717 0.88430 0.85274 0.86882 0.85764 0.75920 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.83 113.37 1.11 1.95 16 2 O -0.34 -15.73 9.63 -89.35 -0.86 -16.59 16 3 C -0.09 -4.37 6.74 23.23 0.16 -4.21 16 4 C -0.10 -3.66 9.12 22.51 0.21 -3.46 16 5 C -0.32 -11.31 9.33 22.70 0.21 -11.10 16 6 C 0.40 15.89 7.65 133.45 1.02 16.91 16 7 N -0.74 -21.91 5.51 -344.85 -1.90 -23.81 16 8 C 0.13 2.29 4.52 86.38 0.39 2.68 16 9 C 0.12 1.57 3.62 45.45 0.16 1.73 16 10 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 11 C -0.11 -0.71 6.69 31.65 0.21 -0.50 16 12 C -0.15 -1.59 6.86 30.59 0.21 -1.38 16 13 C 0.50 11.53 8.43 87.90 0.74 12.27 16 14 O -0.60 -20.22 18.03 -3.02 -0.05 -20.27 16 15 N -0.73 -14.87 5.73 -439.45 -2.52 -17.39 16 16 N -0.62 -30.39 5.06 -186.17 -0.94 -31.33 16 17 C 0.26 14.15 6.28 40.23 0.25 14.41 16 18 C -0.50 -29.52 9.29 23.36 0.22 -29.30 16 19 H 0.06 3.74 7.55 -2.91 -0.02 3.72 16 20 C 0.02 1.03 5.51 85.28 0.47 1.50 16 21 N -0.83 -48.15 13.65 21.84 0.30 -47.85 16 22 Si 1.19 57.62 25.93 68.60 1.78 59.40 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.33 -15.53 7.11 99.48 0.71 -14.82 16 25 H -0.28 -13.42 6.55 99.48 0.65 -12.77 16 26 H 0.05 1.45 7.70 -2.39 -0.02 1.43 16 27 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.06 1.51 7.68 -2.39 -0.02 1.49 16 29 H 0.14 4.37 6.44 -2.91 -0.02 4.36 16 30 H 0.14 3.90 6.67 -2.91 -0.02 3.88 16 31 H 0.39 11.85 8.02 -92.70 -0.74 11.11 16 32 H 0.07 1.21 7.86 -2.39 -0.02 1.20 16 33 H 0.09 1.38 7.92 -2.38 -0.02 1.36 16 34 H 0.10 0.51 7.88 -2.39 -0.02 0.49 16 35 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.11 1.05 8.14 -2.38 -0.02 1.04 16 37 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.40 9.68 8.31 -92.71 -0.77 8.91 16 39 H 0.28 15.85 8.73 -92.71 -0.81 15.04 16 Total: -1.00 -78.34 323.61 0.66 -77.69 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.51 Total: 18.66 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.37 Total: 1.51 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -5.06 Total: -120.39 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.91 Total: -36.86 kcal Atomic # 14 Polarization: 57.62 SS G_CDS: 1.78 Total: 59.40 kcal Total: -78.34 0.66 -77.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164164026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.607 kcal (2) G-P(sol) polarization free energy of solvation -78.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds