Wall clock time and date at job start Tue Mar 31 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99784 * 2 1 4 4 O 1.20828 * 119.99877 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99958 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.87868 * 41.02911 * 5 3 2 7 7 C 1.54323 * 109.88765 * 279.99969 * 5 3 2 8 8 C 1.55141 * 103.01806 * 218.31076 * 7 5 3 9 9 H 1.08998 * 110.99004 * 277.52769 * 8 7 5 10 10 N 1.46502 * 110.99045 * 153.74822 * 8 7 5 11 11 C 1.39720 * 119.99723 * 158.14550 * 10 8 7 12 12 C 1.39330 * 120.36664 * 359.97438 * 11 10 8 13 13 N 1.31988 * 121.20578 * 180.02562 * 12 11 10 14 14 C 1.31497 * 122.06246 * 359.71257 * 13 12 11 15 15 C 1.40762 * 120.55728 * 0.55567 * 14 13 12 16 16 C 1.41431 * 120.61842 * 179.74526 * 15 14 13 17 17 H 1.08003 * 119.99916 * 23.87368 * 16 15 14 18 18 C 1.39932 * 119.99926 * 203.87198 * 16 15 14 19 19 N 1.30828 * 119.99894 * 27.50186 * 18 16 15 20 20 Si 1.86795 * 119.99876 * 207.22965 * 18 16 15 21 21 H 1.48501 * 109.47328 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47201 * 119.99966 * 20 18 16 23 23 H 1.48500 * 109.47147 * 239.99883 * 20 18 16 24 24 C 1.38661 * 120.35742 * 180.02562 * 11 10 8 25 25 C 1.54903 * 101.68891 * 35.63475 * 8 7 5 26 26 N 1.47439 * 109.88906 * 162.23455 * 5 3 2 27 27 H 1.08997 * 109.46891 * 60.00667 * 1 2 3 28 28 H 1.09000 * 109.46600 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47642 * 300.00144 * 1 2 3 30 30 H 1.09007 * 110.70477 * 99.92936 * 7 5 3 31 31 H 1.08997 * 110.85728 * 336.76668 * 7 5 3 32 32 H 0.96997 * 119.99865 * 338.14646 * 10 8 7 33 33 H 1.08000 * 119.39790 * 0.04213 * 12 11 10 34 34 H 1.07993 * 119.72126 * 180.27003 * 14 13 12 35 35 H 0.97001 * 119.99757 * 3.99055 * 19 18 16 36 36 H 1.08003 * 120.93554 * 359.97438 * 24 11 10 37 37 H 1.09004 * 110.37346 * 81.77615 * 25 8 7 38 38 H 1.09001 * 110.37681 * 204.12081 * 25 8 7 39 39 H 1.00906 * 111.00363 * 356.14517 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9772 0.5220 -0.6720 7 6 4.1032 1.0511 1.4300 8 6 5.2867 2.0503 1.5193 9 1 6.1868 1.6305 1.0702 10 7 5.5330 2.4493 2.9072 11 6 6.7825 2.9529 3.2780 12 6 7.7996 3.0784 2.3341 13 7 8.9862 3.5515 2.6662 14 6 9.2677 3.9316 3.8932 15 6 8.3012 3.8343 4.9120 16 6 8.6043 4.2377 6.2333 17 1 9.3916 4.9551 6.4116 18 6 7.8840 3.7072 7.3093 19 7 7.3465 2.5183 7.2141 20 14 7.6965 4.6936 8.8845 21 1 8.3973 5.9949 8.7402 22 1 6.2553 4.9348 9.1490 23 1 8.2874 3.9355 10.0165 24 6 7.0240 3.3323 4.5896 25 6 4.7546 3.2423 0.6853 26 7 3.9982 2.6197 -0.4226 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 4.4537 0.0264 1.5539 31 1 3.3413 1.2887 2.1723 32 1 4.8288 2.3638 3.5687 33 1 7.6137 2.7833 1.3119 34 1 10.2500 4.3174 4.1222 35 1 7.4956 1.9808 6.4205 36 1 6.2550 3.2461 5.3431 37 1 4.0962 3.8652 1.2908 38 1 5.5837 3.8325 0.2950 39 1 3.2067 3.1880 -0.6846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164308468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:24 Heat of formation + Delta-G solvation = -56.907313 kcal Electronic energy + Delta-G solvation = -22661.246018 eV Core-core repulsion = 19182.082028 eV Total energy + Delta-G solvation = -3479.163990 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.09147 -39.07394 -38.11516 -36.72487 -34.71510 -34.10314 -30.42045 -30.29253 -29.64701 -27.84152 -26.86923 -25.42526 -23.33729 -22.10124 -21.46323 -20.67360 -20.23690 -18.41246 -17.88488 -17.40828 -16.76177 -16.28217 -15.74194 -15.33254 -15.20397 -14.64509 -14.16969 -14.02297 -13.58532 -13.49351 -13.26589 -13.07616 -12.85925 -12.60407 -12.25182 -12.17299 -11.82766 -11.64330 -11.57356 -11.33768 -11.17964 -11.14494 -10.76263 -10.63078 -10.48041 -9.86314 -9.70420 -9.21217 -8.83308 -8.14921 -8.01669 -7.34658 -6.62573 -4.57304 1.77916 2.31798 2.71559 2.92166 3.10972 3.25090 3.30771 3.64854 3.93779 4.16237 4.30433 4.51628 4.52702 4.62466 4.75053 4.82210 4.88887 5.15313 5.17430 5.23369 5.55042 5.57371 5.61278 5.90582 5.96921 6.00975 6.14995 6.35511 6.41834 6.53838 6.66573 6.92284 7.02591 7.33775 7.35304 7.41413 7.66581 7.81137 7.95514 8.22011 8.25001 8.66432 8.74788 9.63694 9.93091 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021641 B = 0.003417 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.535481 B = 8191.749309 C = 9060.161648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.450 3.550 4 O -0.508 6.508 5 C 0.088 3.912 6 H 0.125 0.875 7 C -0.138 4.138 8 C 0.158 3.842 9 H 0.100 0.900 10 N -0.744 5.744 11 C 0.194 3.806 12 C -0.111 4.111 13 N -0.435 5.435 14 C -0.052 4.052 15 C 0.082 3.918 16 C -0.508 4.508 17 H 0.081 0.919 18 C 0.040 3.960 19 N -0.789 5.789 20 Si 1.070 2.930 21 H -0.275 1.275 22 H -0.275 1.275 23 H -0.277 1.277 24 C -0.267 4.267 25 C 0.025 3.975 26 N -0.658 5.658 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.391 0.609 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.301 0.699 36 H 0.110 0.890 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 -5.384 -9.310 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.269 6.269 3 C 0.292 3.708 4 O -0.396 6.396 5 C -0.023 4.023 6 H 0.142 0.858 7 C -0.177 4.177 8 C 0.050 3.950 9 H 0.118 0.882 10 N -0.376 5.376 11 C 0.093 3.907 12 C -0.269 4.269 13 N -0.142 5.142 14 C -0.218 4.218 15 C 0.077 3.923 16 C -0.536 4.536 17 H 0.099 0.901 18 C -0.183 4.183 19 N -0.411 5.411 20 Si 0.893 3.107 21 H -0.199 1.199 22 H -0.200 1.200 23 H -0.203 1.203 24 C -0.296 4.296 25 C -0.106 4.106 26 N -0.292 5.292 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.226 0.774 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.621 -5.375 -9.048 15.678 hybrid contribution -1.412 0.158 -0.020 1.421 sum -13.033 -5.216 -9.068 16.712 Atomic orbital electron populations 1.23309 0.76229 1.03875 1.02625 1.86534 1.23558 1.33170 1.83679 1.24600 0.92977 0.81566 0.71678 1.90662 1.66858 1.36459 1.45608 1.22164 0.85232 0.96107 0.98829 0.85771 1.22996 0.98567 1.02206 0.93899 1.21736 0.97166 0.92223 0.83920 0.88206 1.44280 1.12681 1.73009 1.07627 1.18553 0.85037 0.92927 0.94202 1.21232 0.90615 1.17414 0.97645 1.66821 1.19900 1.06461 1.20977 1.22287 0.98827 1.11620 0.89031 1.18323 0.90591 0.89030 0.94403 1.20588 1.18069 1.23599 0.91372 0.90057 1.27076 0.91297 0.95780 1.04190 1.70416 1.32250 1.07135 1.31325 0.83578 0.77897 0.75720 0.73461 1.19929 1.20012 1.20289 1.20840 0.98198 1.16812 0.93798 1.23529 0.98201 0.97574 0.91260 1.62337 1.27691 1.02250 1.36920 0.91805 0.87892 0.91837 0.88532 0.90593 0.77448 0.86384 0.85849 0.88573 0.87191 0.93083 0.88837 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.57 10.57 -39.26 -0.41 -3.99 16 3 C 0.45 5.17 7.04 36.01 0.25 5.43 16 4 O -0.51 -7.05 15.32 -18.75 -0.29 -7.34 16 5 C 0.09 0.94 4.01 -67.88 -0.27 0.67 16 6 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 7 C -0.14 -1.54 6.09 -24.91 -0.15 -1.69 16 8 C 0.16 2.20 3.05 -65.79 -0.20 2.00 16 9 H 0.10 1.45 6.55 -51.93 -0.34 1.11 16 10 N -0.74 -12.77 5.39 -50.05 -0.27 -13.04 16 11 C 0.19 4.24 6.66 -83.70 -0.56 3.69 16 12 C -0.11 -2.52 10.40 -17.08 -0.18 -2.69 16 13 N -0.43 -10.77 10.33 -12.37 -0.13 -10.90 16 14 C -0.05 -1.31 10.97 -16.74 -0.18 -1.50 16 15 C 0.08 2.14 5.32 -106.69 -0.57 1.58 16 16 C -0.51 -13.10 9.00 -37.73 -0.34 -13.44 16 17 H 0.08 2.03 7.98 -52.48 -0.42 1.62 16 18 C 0.04 0.98 4.93 -17.35 -0.09 0.89 16 19 N -0.79 -20.21 12.38 55.55 0.69 -19.52 16 20 Si 1.07 20.94 30.01 -169.99 -5.10 15.84 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 24 C -0.27 -6.57 7.95 -38.39 -0.31 -6.88 16 25 C 0.02 0.34 7.27 -2.28 -0.02 0.32 16 26 N -0.66 -7.93 7.34 -105.00 -0.77 -8.70 16 27 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.87 7.70 -51.93 -0.40 0.47 16 32 H 0.39 6.41 8.56 -40.82 -0.35 6.06 16 33 H 0.12 2.39 6.24 -52.49 -0.33 2.06 16 34 H 0.12 2.96 8.06 -52.49 -0.42 2.54 16 35 H 0.30 7.96 6.71 -40.82 -0.27 7.69 16 36 H 0.11 2.77 6.58 -52.48 -0.35 2.43 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.35 4.35 7.17 -39.29 -0.28 4.07 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -29.07 328.42 -7.79 -36.86 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -4.91 Total: 16.15 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.54 Total: -10.30 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.48 Total: -52.16 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.70 Total: -11.33 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.10 Total: 15.84 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.07 -7.79 -36.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164308468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.048 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds