Wall clock time and date at job start Tue Mar 31 2020 06:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99784 * 2 1 4 4 O 1.20828 * 119.99877 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99958 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.87868 * 41.02911 * 5 3 2 7 7 C 1.54323 * 109.88765 * 279.99969 * 5 3 2 8 8 C 1.55141 * 103.01806 * 218.31076 * 7 5 3 9 9 H 1.08998 * 110.99004 * 277.52769 * 8 7 5 10 10 N 1.46502 * 110.99045 * 153.74822 * 8 7 5 11 11 C 1.39720 * 119.99723 * 158.14550 * 10 8 7 12 12 C 1.39330 * 120.36664 * 359.97438 * 11 10 8 13 13 N 1.31988 * 121.20578 * 180.02562 * 12 11 10 14 14 C 1.31497 * 122.06246 * 359.71257 * 13 12 11 15 15 C 1.40762 * 120.55728 * 0.55567 * 14 13 12 16 16 C 1.41431 * 120.61842 * 179.74526 * 15 14 13 17 17 H 1.08003 * 119.99916 * 23.87368 * 16 15 14 18 18 C 1.39932 * 119.99926 * 203.87198 * 16 15 14 19 19 N 1.30828 * 119.99894 * 27.50186 * 18 16 15 20 20 Si 1.86795 * 119.99876 * 207.22965 * 18 16 15 21 21 H 1.48501 * 109.47328 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47201 * 119.99966 * 20 18 16 23 23 H 1.48500 * 109.47147 * 239.99883 * 20 18 16 24 24 C 1.38661 * 120.35742 * 180.02562 * 11 10 8 25 25 C 1.54903 * 101.68891 * 35.63475 * 8 7 5 26 26 N 1.47439 * 109.88906 * 162.23455 * 5 3 2 27 27 H 1.08997 * 109.46891 * 60.00667 * 1 2 3 28 28 H 1.09000 * 109.46600 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47642 * 300.00144 * 1 2 3 30 30 H 1.09007 * 110.70477 * 99.92936 * 7 5 3 31 31 H 1.08997 * 110.85728 * 336.76668 * 7 5 3 32 32 H 0.96997 * 119.99865 * 338.14646 * 10 8 7 33 33 H 1.08000 * 119.39790 * 0.04213 * 12 11 10 34 34 H 1.07993 * 119.72126 * 180.27003 * 14 13 12 35 35 H 0.97001 * 119.99757 * 3.99055 * 19 18 16 36 36 H 1.08003 * 120.93554 * 359.97438 * 24 11 10 37 37 H 1.09004 * 110.37346 * 81.77615 * 25 8 7 38 38 H 1.09001 * 110.37681 * 204.12081 * 25 8 7 39 39 H 1.00906 * 111.00363 * 356.14517 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9772 0.5220 -0.6720 7 6 4.1032 1.0511 1.4300 8 6 5.2867 2.0503 1.5193 9 1 6.1868 1.6305 1.0702 10 7 5.5330 2.4493 2.9072 11 6 6.7825 2.9529 3.2780 12 6 7.7996 3.0784 2.3341 13 7 8.9862 3.5515 2.6662 14 6 9.2677 3.9316 3.8932 15 6 8.3012 3.8343 4.9120 16 6 8.6043 4.2377 6.2333 17 1 9.3916 4.9551 6.4116 18 6 7.8840 3.7072 7.3093 19 7 7.3465 2.5183 7.2141 20 14 7.6965 4.6936 8.8845 21 1 8.3973 5.9949 8.7402 22 1 6.2553 4.9348 9.1490 23 1 8.2874 3.9355 10.0165 24 6 7.0240 3.3323 4.5896 25 6 4.7546 3.2423 0.6853 26 7 3.9982 2.6197 -0.4226 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 4.4537 0.0264 1.5539 31 1 3.3413 1.2887 2.1723 32 1 4.8288 2.3638 3.5687 33 1 7.6137 2.7833 1.3119 34 1 10.2500 4.3174 4.1222 35 1 7.4956 1.9808 6.4205 36 1 6.2550 3.2461 5.3431 37 1 4.0962 3.8652 1.2908 38 1 5.5837 3.8325 0.2950 39 1 3.2067 3.1880 -0.6846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164308468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:23 Heat of formation + Delta-G solvation = -77.144442 kcal Electronic energy + Delta-G solvation = -22662.123566 eV Core-core repulsion = 19182.082028 eV Total energy + Delta-G solvation = -3480.041538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.99397 -40.60558 -39.43735 -37.66076 -36.36090 -35.79367 -32.08607 -31.42291 -31.09332 -28.75769 -28.15125 -27.30437 -24.33650 -23.77826 -23.14268 -21.84113 -21.39328 -19.86221 -19.14437 -18.37824 -17.72111 -17.59974 -17.34611 -16.85024 -16.45831 -16.06541 -15.73669 -15.00628 -14.86761 -14.70088 -14.66286 -14.39349 -14.22463 -13.91173 -13.53744 -13.46588 -13.09860 -13.01533 -12.87082 -12.75894 -12.55193 -12.28439 -11.97436 -11.92312 -11.67409 -11.61726 -11.27188 -11.04449 -10.07932 -9.95291 -9.82515 -9.27743 -8.30284 -6.55203 0.86740 0.89208 1.01776 1.51892 1.54432 1.66212 1.81340 2.30496 2.35974 2.69201 3.11494 3.32163 3.52839 3.65896 3.68638 3.90302 4.06605 4.16951 4.22699 4.25444 4.27153 4.48705 4.60646 4.65077 4.68607 4.69908 4.77246 4.81604 4.97997 5.08652 5.17508 5.41149 5.51864 5.54180 5.72479 5.90783 6.01775 6.05196 6.41726 6.49009 6.63899 6.82027 6.88507 7.71784 7.96679 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021641 B = 0.003417 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.535481 B = 8191.749309 C = 9060.161648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.453 3.547 4 O -0.537 6.537 5 C 0.091 3.909 6 H 0.150 0.850 7 C -0.127 4.127 8 C 0.152 3.848 9 H 0.102 0.898 10 N -0.732 5.732 11 C 0.208 3.792 12 C -0.110 4.110 13 N -0.444 5.444 14 C -0.080 4.080 15 C 0.061 3.939 16 C -0.537 4.537 17 H 0.079 0.921 18 C 0.008 3.992 19 N -0.803 5.803 20 Si 1.121 2.879 21 H -0.263 1.263 22 H -0.268 1.268 23 H -0.265 1.265 24 C -0.284 4.284 25 C 0.031 3.969 26 N -0.655 5.655 27 H 0.064 0.936 28 H 0.134 0.866 29 H 0.058 0.942 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.397 0.603 33 H 0.147 0.853 34 H 0.126 0.874 35 H 0.285 0.715 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.084 0.916 39 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.210 -6.385 -9.928 17.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C 0.296 3.704 4 O -0.427 6.427 5 C -0.020 4.020 6 H 0.168 0.832 7 C -0.166 4.166 8 C 0.045 3.955 9 H 0.120 0.880 10 N -0.363 5.363 11 C 0.104 3.896 12 C -0.269 4.269 13 N -0.151 5.151 14 C -0.245 4.245 15 C 0.056 3.944 16 C -0.566 4.566 17 H 0.097 0.903 18 C -0.210 4.210 19 N -0.425 5.425 20 Si 0.938 3.062 21 H -0.188 1.188 22 H -0.193 1.193 23 H -0.190 1.190 24 C -0.315 4.315 25 C -0.100 4.100 26 N -0.289 5.289 27 H 0.083 0.917 28 H 0.152 0.848 29 H 0.077 0.923 30 H 0.136 0.864 31 H 0.092 0.908 32 H 0.232 0.768 33 H 0.164 0.836 34 H 0.144 0.856 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.977 -6.409 -9.698 17.422 hybrid contribution -1.113 0.374 -0.023 1.174 sum -14.089 -6.035 -9.721 18.150 Atomic orbital electron populations 1.23597 0.74672 1.05939 1.02506 1.86522 1.25074 1.32203 1.83121 1.24677 0.93196 0.81559 0.70926 1.90658 1.67504 1.37448 1.47048 1.22284 0.85009 0.95776 0.98962 0.83221 1.22944 0.97086 1.02414 0.94182 1.21924 0.98516 0.93235 0.81819 0.88045 1.44330 1.11014 1.71566 1.09345 1.18522 0.86620 0.91381 0.93044 1.21724 0.90044 1.16224 0.98930 1.66825 1.20970 1.06622 1.20678 1.22355 0.99208 1.13448 0.89466 1.18608 0.91414 0.89466 0.94941 1.20795 1.19209 1.24501 0.92078 0.90309 1.28454 0.90003 0.95750 1.06828 1.70529 1.33521 1.07801 1.30687 0.82948 0.78356 0.74849 0.70024 1.18755 1.19260 1.19007 1.20815 0.97674 1.18134 0.94832 1.23360 0.97915 0.97229 0.91482 1.62347 1.27753 1.02801 1.35986 0.91672 0.84792 0.92279 0.86393 0.90831 0.76832 0.83620 0.85596 0.90238 0.88270 0.94244 0.89723 0.82705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.35 -6.23 10.57 -51.44 -0.54 -6.78 16 3 C 0.45 9.44 7.04 71.24 0.50 9.94 16 4 O -0.54 -14.17 15.32 21.96 0.34 -13.83 16 5 C 0.09 1.69 4.01 44.51 0.18 1.87 16 6 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 7 C -0.13 -2.48 6.09 31.78 0.19 -2.29 16 8 C 0.15 3.91 3.05 46.38 0.14 4.05 16 9 H 0.10 2.66 6.55 -2.39 -0.02 2.64 16 10 N -0.73 -24.16 5.39 -312.26 -1.68 -25.85 16 11 C 0.21 9.01 6.66 38.25 0.25 9.27 16 12 C -0.11 -4.86 10.40 84.93 0.88 -3.98 16 13 N -0.44 -22.00 10.33 -193.06 -1.99 -23.99 16 14 C -0.08 -4.19 10.97 85.36 0.94 -3.25 16 15 C 0.06 3.28 5.32 -21.21 -0.11 3.16 16 16 C -0.54 -28.46 9.00 23.47 0.21 -28.25 16 17 H 0.08 4.07 7.98 -2.91 -0.02 4.04 16 18 C 0.01 0.38 4.93 85.25 0.42 0.80 16 19 N -0.80 -41.77 12.38 21.82 0.27 -41.50 16 20 Si 1.12 41.83 30.01 68.60 2.06 43.89 16 21 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 22 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 23 H -0.27 -9.34 7.11 99.48 0.71 -8.64 16 24 C -0.28 -14.23 7.95 23.04 0.18 -14.05 16 25 C 0.03 0.80 7.27 86.76 0.63 1.43 16 26 N -0.65 -14.48 7.34 -486.10 -3.57 -18.05 16 27 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 28 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 30 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.07 1.51 7.70 -2.39 -0.02 1.49 16 32 H 0.40 12.53 8.56 -92.71 -0.79 11.74 16 33 H 0.15 5.57 6.24 -2.91 -0.02 5.55 16 34 H 0.13 6.27 8.06 -2.91 -0.02 6.24 16 35 H 0.29 15.54 6.71 -92.71 -0.62 14.92 16 36 H 0.10 5.12 6.58 -2.91 -0.02 5.10 16 37 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.35 8.18 7.17 -89.69 -0.64 7.54 16 Total: -1.00 -63.35 328.42 0.30 -63.05 By element: Atomic # 1 Polarization: 43.02 SS G_CDS: -0.19 Total: 42.83 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 5.62 Total: -19.77 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -6.98 Total: -109.39 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.21 Total: -20.61 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.06 Total: 43.89 kcal Total: -63.35 0.30 -63.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164308468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.092 kcal (2) G-P(sol) polarization free energy of solvation -63.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds