Wall clock time and date at job start Tue Mar 31 2020 06:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36848 * 119.99862 * 2 1 4 4 H 1.07994 * 119.99748 * 205.86338 * 3 2 1 5 5 C 1.38891 * 120.00158 * 25.87046 * 3 2 1 6 6 N 1.31510 * 119.99983 * 12.29170 * 5 3 2 7 7 Si 1.86801 * 120.00050 * 192.29841 * 5 3 2 8 8 H 1.48494 * 109.47428 * 59.99450 * 7 5 3 9 9 H 1.48501 * 109.47011 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47039 * 299.99188 * 7 5 3 11 11 C 1.38362 * 120.00164 * 179.97438 * 2 1 3 12 12 C 1.39465 * 119.54860 * 185.00054 * 11 2 1 13 13 C 1.36869 * 119.37789 * 180.02562 * 12 11 2 14 14 C 1.40359 * 118.49143 * 0.02562 * 13 12 11 15 15 C 1.47546 * 120.47459 * 179.72081 * 14 13 12 16 16 O 1.21589 * 119.99996 * 213.27503 * 15 14 13 17 17 N 1.34777 * 119.99630 * 33.27613 * 15 14 13 18 18 C 1.47154 * 120.98381 * 5.40893 * 17 15 14 19 19 C 1.53721 * 108.15956 * 129.43611 * 18 17 15 20 20 O 1.42959 * 109.14399 * 52.53850 * 19 18 17 21 21 C 1.42962 * 114.17147 * 297.28603 * 20 19 18 22 22 C 1.47148 * 120.98164 * 185.70034 * 17 15 14 23 23 C 1.39639 * 119.05471 * 359.97438 * 14 13 12 24 24 N 1.31605 * 120.52957 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.47019 * 264.78960 * 1 2 3 26 26 H 1.09001 * 109.47086 * 24.79132 * 1 2 3 27 27 H 1.09004 * 109.46897 * 144.79293 * 1 2 3 28 28 H 0.96999 * 119.99585 * 180.02562 * 6 5 3 29 29 H 1.08007 * 120.31029 * 0.02562 * 12 11 2 30 30 H 1.07997 * 120.75986 * 179.97438 * 13 12 11 31 31 H 1.08993 * 109.68495 * 249.21434 * 18 17 15 32 32 H 1.09001 * 109.67923 * 9.77292 * 18 17 15 33 33 H 1.08999 * 109.65367 * 292.57523 * 19 18 17 34 34 H 1.08994 * 109.48164 * 172.40238 * 19 18 17 35 35 H 1.09004 * 109.51212 * 302.66371 * 21 20 19 36 36 H 1.08999 * 109.55419 * 182.52968 * 21 20 19 37 37 H 1.09005 * 109.68382 * 350.23189 * 22 17 15 38 38 H 1.09001 * 109.68793 * 110.78727 * 22 17 15 39 39 H 1.08008 * 119.73605 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1852 0.0000 4 1 3.1480 1.2320 -0.4080 5 6 1.5591 2.3277 0.5248 6 7 0.4560 2.2315 1.2343 7 14 2.3324 4.0011 0.2229 8 1 2.3880 4.2645 -1.2375 9 1 1.5155 5.0504 0.8839 10 1 3.7080 4.0189 0.7818 11 6 2.1568 -1.1982 0.0005 12 6 3.5474 -1.1895 0.1063 13 6 4.2283 -2.3768 0.1059 14 6 3.4954 -3.5689 -0.0023 15 6 4.1853 -4.8731 -0.0133 16 8 3.7354 -5.7933 -0.6684 17 7 5.3142 -5.0443 0.7027 18 6 5.8133 -3.9857 1.5948 19 6 6.0891 -4.6103 2.9720 20 8 6.9333 -5.7523 2.8083 21 6 6.3528 -6.8030 2.0319 22 6 6.0875 -6.2928 0.6108 23 6 2.1044 -3.5028 -0.1048 24 7 1.4882 -2.3399 -0.1006 25 1 -0.3633 -0.0933 1.0235 26 1 -0.3633 0.9330 -0.4309 27 1 -0.3633 -0.8397 -0.5925 28 1 0.0437 3.0295 1.6004 29 1 4.0820 -0.2545 0.1877 30 1 5.3051 -2.3960 0.1863 31 1 6.7333 -3.5662 1.1880 32 1 5.0623 -3.2014 1.6898 33 1 5.1487 -4.9155 3.4311 34 1 6.5852 -3.8790 3.6100 35 1 5.4134 -7.1161 2.4876 36 1 7.0386 -7.6493 1.9928 37 1 5.5183 -7.0371 0.0539 38 1 7.0348 -6.1017 0.1066 39 1 1.5295 -4.4134 -0.1882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166800719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:21 Heat of formation + Delta-G solvation = -11.281738 kcal Electronic energy + Delta-G solvation = -23219.907630 eV Core-core repulsion = 19742.722113 eV Total energy + Delta-G solvation = -3477.185517 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31374 -39.07074 -37.86882 -36.04504 -34.63705 -32.52495 -31.88287 -31.06357 -29.40753 -27.65437 -26.78007 -24.78176 -24.26111 -22.72521 -22.05789 -21.00047 -19.35259 -17.86597 -17.06051 -16.69728 -16.33898 -15.80613 -15.46710 -15.31916 -15.20865 -14.78996 -14.30571 -14.00007 -13.85350 -13.72673 -13.22433 -12.94954 -12.71821 -12.19334 -12.18010 -11.86054 -11.68091 -11.52092 -11.39418 -11.37162 -10.97601 -10.75082 -10.73584 -10.62130 -10.18651 -9.68363 -9.42005 -9.00712 -8.82180 -8.51232 -8.33759 -7.08177 -6.70586 -4.14954 1.81810 2.32610 2.96521 3.00708 3.02412 3.10230 3.42861 3.72489 3.76369 4.51790 4.53375 4.69027 4.87818 4.95147 4.97858 5.05943 5.18518 5.35830 5.46359 5.47457 5.55155 5.58294 5.70810 5.78342 5.87446 6.14344 6.16788 6.51696 6.60946 6.68214 6.76459 6.83645 6.97463 6.98962 7.06651 7.11325 7.39482 7.62853 7.77340 8.19447 8.61166 8.78996 8.90641 9.44521 10.24890 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024606 B = 0.003842 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.648981 B = 7285.349482 C = 7961.485238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.391 5.391 3 C -0.318 4.318 4 H 0.103 0.897 5 C 0.037 3.963 6 N -0.853 5.853 7 Si 0.935 3.065 8 H -0.269 1.269 9 H -0.279 1.279 10 H -0.268 1.268 11 C 0.364 3.636 12 C -0.248 4.248 13 C -0.015 4.015 14 C -0.340 4.340 15 C 0.587 3.413 16 O -0.561 6.561 17 N -0.622 5.622 18 C 0.065 3.935 19 C 0.046 3.954 20 O -0.384 6.384 21 C 0.049 3.951 22 C 0.079 3.921 23 C 0.226 3.774 24 N -0.574 5.574 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.277 0.723 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.837 -7.658 2.538 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.073 5.073 3 C -0.446 4.446 4 H 0.121 0.879 5 C -0.171 4.171 6 N -0.485 5.485 7 Si 0.760 3.240 8 H -0.194 1.194 9 H -0.204 1.204 10 H -0.193 1.193 11 C 0.120 3.880 12 C -0.274 4.274 13 C -0.039 4.039 14 C -0.353 4.353 15 C 0.381 3.619 16 O -0.441 6.441 17 N -0.357 5.357 18 C -0.058 4.058 19 C -0.032 4.032 20 O -0.303 6.303 21 C -0.029 4.029 22 C -0.044 4.044 23 C 0.057 3.943 24 N -0.294 5.294 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.489 -7.508 2.326 10.856 hybrid contribution 1.021 0.922 -0.049 1.377 sum 8.510 -6.586 2.277 10.999 Atomic orbital electron populations 1.21480 0.79472 1.00292 1.01205 1.42635 1.05616 1.01704 1.57328 1.19742 1.02173 0.84165 1.38555 0.87908 1.25547 0.96475 1.00819 0.94268 1.70051 1.18577 1.31096 1.28807 0.85849 0.79216 0.79807 0.79144 1.19365 1.20415 1.19251 1.18617 0.88772 0.85983 0.94585 1.20839 0.93726 0.98399 1.14413 1.20969 0.98491 0.91487 0.92999 1.19661 0.95547 0.91900 1.28158 1.18320 0.78433 0.87890 0.77292 1.90677 1.65635 1.43885 1.43883 1.47992 1.25871 1.16457 1.45404 1.22948 1.01088 0.91729 0.90066 1.23126 0.95295 0.88358 0.96371 1.87922 1.42779 1.27096 1.72467 1.22965 0.99083 0.90199 0.90622 1.22173 0.96478 0.88069 0.97714 1.22124 0.89979 0.94392 0.87781 1.67238 1.39551 0.97201 1.25397 0.92758 0.91206 0.93530 0.91221 0.85460 0.86298 0.90929 0.86673 0.92504 0.87743 0.92698 0.88009 0.88228 0.91267 0.84013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.73 8.70 59.85 0.52 3.25 16 2 N -0.39 -9.42 3.09 -122.44 -0.38 -9.80 16 3 C -0.32 -7.61 8.81 -15.07 -0.13 -7.75 16 4 H 0.10 2.34 6.40 -52.49 -0.34 2.01 16 5 C 0.04 0.87 5.04 -17.45 -0.09 0.79 16 6 N -0.85 -20.81 10.91 55.49 0.61 -20.21 16 7 Si 0.93 18.00 29.57 -169.99 -5.03 12.98 16 8 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 9 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 10 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 11 C 0.36 8.36 7.33 -155.27 -1.14 7.22 16 12 C -0.25 -5.05 9.19 -39.62 -0.36 -5.42 16 13 C -0.01 -0.26 7.46 -39.28 -0.29 -0.55 16 14 C -0.34 -6.43 5.36 -104.78 -0.56 -6.99 16 15 C 0.59 10.61 7.43 -12.47 -0.09 10.52 16 16 O -0.56 -11.58 16.26 5.29 0.09 -11.50 16 17 N -0.62 -9.10 3.01 -173.24 -0.52 -9.62 16 18 C 0.06 0.80 4.95 -3.31 -0.02 0.78 16 19 C 0.05 0.51 7.00 37.53 0.26 0.77 16 20 O -0.38 -4.59 10.74 -35.23 -0.38 -4.97 16 21 C 0.05 0.51 6.99 37.31 0.26 0.77 16 22 C 0.08 0.96 6.65 -3.53 -0.02 0.94 16 23 C 0.23 4.57 10.77 -17.13 -0.18 4.39 16 24 N -0.57 -12.83 9.13 -12.12 -0.11 -12.94 16 25 H 0.05 1.30 7.85 -51.93 -0.41 0.89 16 26 H 0.07 1.62 6.82 -51.93 -0.35 1.27 16 27 H 0.05 1.01 7.45 -51.93 -0.39 0.62 16 28 H 0.28 6.37 8.31 -40.82 -0.34 6.03 16 29 H 0.13 2.52 6.29 -52.48 -0.33 2.19 16 30 H 0.12 1.76 5.84 -52.49 -0.31 1.45 16 31 H 0.07 0.81 7.96 -51.93 -0.41 0.39 16 32 H 0.12 1.54 4.58 -51.93 -0.24 1.31 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.29 7.06 -51.93 -0.37 0.92 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.14 2.66 7.98 -52.48 -0.42 2.24 16 LS Contribution 316.97 15.07 4.78 4.78 Total: -1.00 -28.36 316.97 -7.60 -35.97 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.81 Total: 6.59 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -1.85 Total: 8.72 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.41 Total: -52.56 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.29 Total: -16.47 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.36 -7.60 -35.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.683 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds