Wall clock time and date at job start Tue Mar 31 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36848 * 119.99862 * 2 1 4 4 H 1.07994 * 119.99748 * 205.86338 * 3 2 1 5 5 C 1.38891 * 120.00158 * 25.87046 * 3 2 1 6 6 N 1.31510 * 119.99983 * 12.29170 * 5 3 2 7 7 Si 1.86801 * 120.00050 * 192.29841 * 5 3 2 8 8 H 1.48494 * 109.47428 * 59.99450 * 7 5 3 9 9 H 1.48501 * 109.47011 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47039 * 299.99188 * 7 5 3 11 11 C 1.38362 * 120.00164 * 179.97438 * 2 1 3 12 12 C 1.39465 * 119.54860 * 185.00054 * 11 2 1 13 13 C 1.36869 * 119.37789 * 180.02562 * 12 11 2 14 14 C 1.40359 * 118.49143 * 0.02562 * 13 12 11 15 15 C 1.47546 * 120.47459 * 179.72081 * 14 13 12 16 16 O 1.21589 * 119.99996 * 213.27503 * 15 14 13 17 17 N 1.34777 * 119.99630 * 33.27613 * 15 14 13 18 18 C 1.47154 * 120.98381 * 5.40893 * 17 15 14 19 19 C 1.53721 * 108.15956 * 129.43611 * 18 17 15 20 20 O 1.42959 * 109.14399 * 52.53850 * 19 18 17 21 21 C 1.42962 * 114.17147 * 297.28603 * 20 19 18 22 22 C 1.47148 * 120.98164 * 185.70034 * 17 15 14 23 23 C 1.39639 * 119.05471 * 359.97438 * 14 13 12 24 24 N 1.31605 * 120.52957 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.47019 * 264.78960 * 1 2 3 26 26 H 1.09001 * 109.47086 * 24.79132 * 1 2 3 27 27 H 1.09004 * 109.46897 * 144.79293 * 1 2 3 28 28 H 0.96999 * 119.99585 * 180.02562 * 6 5 3 29 29 H 1.08007 * 120.31029 * 0.02562 * 12 11 2 30 30 H 1.07997 * 120.75986 * 179.97438 * 13 12 11 31 31 H 1.08993 * 109.68495 * 249.21434 * 18 17 15 32 32 H 1.09001 * 109.67923 * 9.77292 * 18 17 15 33 33 H 1.08999 * 109.65367 * 292.57523 * 19 18 17 34 34 H 1.08994 * 109.48164 * 172.40238 * 19 18 17 35 35 H 1.09004 * 109.51212 * 302.66371 * 21 20 19 36 36 H 1.08999 * 109.55419 * 182.52968 * 21 20 19 37 37 H 1.09005 * 109.68382 * 350.23189 * 22 17 15 38 38 H 1.09001 * 109.68793 * 110.78727 * 22 17 15 39 39 H 1.08008 * 119.73605 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1852 0.0000 4 1 3.1480 1.2320 -0.4080 5 6 1.5591 2.3277 0.5248 6 7 0.4560 2.2315 1.2343 7 14 2.3324 4.0011 0.2229 8 1 2.3880 4.2645 -1.2375 9 1 1.5155 5.0504 0.8839 10 1 3.7080 4.0189 0.7818 11 6 2.1568 -1.1982 0.0005 12 6 3.5474 -1.1895 0.1063 13 6 4.2283 -2.3768 0.1059 14 6 3.4954 -3.5689 -0.0023 15 6 4.1853 -4.8731 -0.0133 16 8 3.7354 -5.7933 -0.6684 17 7 5.3142 -5.0443 0.7027 18 6 5.8133 -3.9857 1.5948 19 6 6.0891 -4.6103 2.9720 20 8 6.9333 -5.7523 2.8083 21 6 6.3528 -6.8030 2.0319 22 6 6.0875 -6.2928 0.6108 23 6 2.1044 -3.5028 -0.1048 24 7 1.4882 -2.3399 -0.1006 25 1 -0.3633 -0.0933 1.0235 26 1 -0.3633 0.9330 -0.4309 27 1 -0.3633 -0.8397 -0.5925 28 1 0.0437 3.0295 1.6004 29 1 4.0820 -0.2545 0.1877 30 1 5.3051 -2.3960 0.1863 31 1 6.7333 -3.5662 1.1880 32 1 5.0623 -3.2014 1.6898 33 1 5.1487 -4.9155 3.4311 34 1 6.5852 -3.8790 3.6100 35 1 5.4134 -7.1161 2.4876 36 1 7.0386 -7.6493 1.9928 37 1 5.5183 -7.0371 0.0539 38 1 7.0348 -6.1017 0.1066 39 1 1.5295 -4.4134 -0.1882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:20 Heat of formation + Delta-G solvation = -28.424423 kcal Electronic energy + Delta-G solvation = -23220.650992 eV Core-core repulsion = 19742.722113 eV Total energy + Delta-G solvation = -3477.928880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67393 -40.51462 -39.13258 -37.72214 -35.85799 -34.13073 -33.37515 -32.24709 -30.97777 -28.81259 -28.53407 -26.37451 -25.35336 -24.15534 -23.45225 -22.46592 -20.61410 -19.55324 -18.39156 -18.28489 -17.53743 -16.99165 -16.80018 -16.58454 -16.50426 -16.00751 -15.60337 -15.53149 -15.37401 -15.20019 -14.82442 -14.27677 -14.05948 -13.82402 -13.50827 -13.27699 -13.09999 -12.96390 -12.77710 -12.62191 -12.50266 -12.31118 -12.13766 -11.70352 -11.36192 -11.19539 -10.95474 -10.60257 -10.48606 -10.08579 -9.56526 -8.78701 -8.41536 -5.95023 0.22692 0.71948 1.43916 1.47843 1.55264 1.86549 1.99451 2.18352 2.83010 2.85577 2.89108 3.29783 3.67431 3.78608 3.83390 3.98082 4.10980 4.19549 4.27836 4.31363 4.47265 4.55397 4.60030 4.67996 4.75903 4.76901 4.86643 4.89960 4.94281 5.08303 5.18436 5.24225 5.28013 5.45129 5.49117 5.75106 6.07575 6.11015 6.32565 6.47795 7.07985 7.18552 7.20052 7.74093 8.55792 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024606 B = 0.003842 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.648981 B = 7285.349482 C = 7961.485238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.138 3.862 2 N -0.421 5.421 3 C -0.339 4.339 4 H 0.109 0.891 5 C -0.004 4.004 6 N -0.890 5.890 7 Si 1.001 2.999 8 H -0.266 1.266 9 H -0.280 1.280 10 H -0.259 1.259 11 C 0.352 3.648 12 C -0.259 4.259 13 C 0.007 3.993 14 C -0.327 4.327 15 C 0.585 3.415 16 O -0.591 6.591 17 N -0.616 5.616 18 C 0.060 3.940 19 C 0.048 3.952 20 O -0.391 6.391 21 C 0.052 3.948 22 C 0.075 3.925 23 C 0.210 3.790 24 N -0.593 5.593 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.277 0.723 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.130 0.870 35 H 0.049 0.951 36 H 0.132 0.868 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.846 -8.362 2.872 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.106 5.106 3 C -0.467 4.467 4 H 0.126 0.874 5 C -0.208 4.208 6 N -0.524 5.524 7 Si 0.823 3.177 8 H -0.191 1.191 9 H -0.205 1.205 10 H -0.183 1.183 11 C 0.110 3.890 12 C -0.285 4.285 13 C -0.018 4.018 14 C -0.339 4.339 15 C 0.378 3.622 16 O -0.473 6.473 17 N -0.350 5.350 18 C -0.062 4.062 19 C -0.030 4.030 20 O -0.309 6.309 21 C -0.025 4.025 22 C -0.047 4.047 23 C 0.044 3.956 24 N -0.314 5.314 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.152 0.848 30 H 0.175 0.825 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.147 0.853 35 H 0.068 0.932 36 H 0.149 0.851 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.553 -8.272 2.678 13.674 hybrid contribution 0.231 0.806 -0.136 0.849 sum 10.784 -7.466 2.542 13.360 Atomic orbital electron populations 1.21179 0.79888 0.99698 0.99763 1.42725 1.05568 1.02170 1.60183 1.20017 1.02718 0.84662 1.39333 0.87391 1.26386 0.96840 1.03850 0.93710 1.70154 1.20123 1.31787 1.30373 0.84859 0.78533 0.75429 0.78872 1.19115 1.20541 1.18313 1.19053 0.89961 0.85957 0.94015 1.20988 0.92819 0.99682 1.15019 1.21295 1.00194 0.89910 0.90398 1.19934 0.95253 0.93164 1.25581 1.18150 0.79402 0.87008 0.77658 1.90672 1.66776 1.44407 1.45429 1.48049 1.24722 1.17921 1.44286 1.23127 1.01461 0.90985 0.90622 1.23191 0.95410 0.88698 0.95670 1.87929 1.43082 1.27408 1.72522 1.23058 0.99746 0.90636 0.89073 1.22393 0.96497 0.86702 0.99115 1.22400 0.91081 0.94146 0.87972 1.67221 1.40465 0.97704 1.26042 0.94787 0.92238 0.93226 0.91301 0.84818 0.82482 0.88620 0.87772 0.93199 0.85258 0.93249 0.85059 0.89189 0.89485 0.83075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.65 8.70 127.77 1.11 7.77 16 2 N -0.42 -20.84 3.09 -541.29 -1.67 -22.52 16 3 C -0.34 -16.52 8.81 84.07 0.74 -15.78 16 4 H 0.11 4.94 6.40 -2.91 -0.02 4.92 16 5 C 0.00 -0.17 5.04 84.90 0.43 0.26 16 6 N -0.89 -44.83 10.91 21.66 0.24 -44.59 16 7 Si 1.00 36.97 29.57 68.60 2.03 39.00 16 8 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 9 H -0.28 -10.27 7.11 99.48 0.71 -9.56 16 10 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 11 C 0.35 16.31 7.33 133.27 0.98 17.28 16 12 C -0.26 -10.29 9.19 22.24 0.20 -10.09 16 13 C 0.01 0.22 7.46 22.47 0.17 0.39 16 14 C -0.33 -11.84 5.36 -19.97 -0.11 -11.95 16 15 C 0.59 20.02 7.43 86.70 0.64 20.66 16 16 O -0.59 -23.66 16.26 -4.00 -0.07 -23.73 16 17 N -0.62 -16.20 3.01 -820.26 -2.47 -18.68 16 18 C 0.06 1.26 4.95 86.50 0.43 1.69 16 19 C 0.05 0.88 7.00 72.22 0.51 1.39 16 20 O -0.39 -7.87 10.74 -148.98 -1.60 -9.47 16 21 C 0.05 0.92 6.99 72.08 0.50 1.42 16 22 C 0.08 1.60 6.65 86.36 0.57 2.18 16 23 C 0.21 8.45 10.77 85.07 0.92 9.36 16 24 N -0.59 -26.83 9.13 -192.26 -1.75 -28.59 16 25 H 0.03 1.71 7.85 -2.38 -0.02 1.69 16 26 H 0.06 2.91 6.82 -2.39 -0.02 2.89 16 27 H 0.05 2.26 7.45 -2.39 -0.02 2.24 16 28 H 0.28 13.13 8.31 -92.71 -0.77 12.36 16 29 H 0.13 5.13 6.29 -2.91 -0.02 5.11 16 30 H 0.16 4.00 5.84 -2.91 -0.02 3.99 16 31 H 0.10 1.65 7.96 -2.39 -0.02 1.63 16 32 H 0.10 2.44 4.58 -2.39 -0.01 2.43 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 2.14 7.06 -2.38 -0.02 2.12 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.15 5.68 7.98 -2.91 -0.02 5.66 16 Total: -1.00 -61.88 316.97 2.87 -59.01 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 1.08 Total: 24.97 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 7.10 Total: 24.58 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -5.67 Total: -114.37 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.67 Total: -33.19 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Total: -61.88 2.87 -59.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.585 kcal (2) G-P(sol) polarization free energy of solvation -61.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds