Wall clock time and date at job start Tue Mar 31 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 117.00042 * 2 1 4 4 O 1.20821 * 119.99622 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99843 * 180.02562 * 3 2 1 6 6 N 1.46502 * 110.67093 * 328.32365 * 5 3 2 7 7 C 1.38798 * 120.00271 * 297.67530 * 6 5 3 8 8 C 1.40084 * 120.75844 * 5.45461 * 7 6 5 9 9 N 1.31658 * 119.13588 * 179.71063 * 8 7 6 10 10 C 1.33598 * 120.79330 * 0.57653 * 9 8 7 11 11 C 1.41152 * 119.17646 * 179.67316 * 10 9 8 12 12 H 1.07995 * 120.00274 * 180.02562 * 11 10 9 13 13 C 1.40045 * 119.99450 * 0.02679 * 11 10 9 14 14 N 1.30726 * 120.00342 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99840 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.46967 * 59.99817 * 15 13 11 17 17 H 1.48502 * 109.47332 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47427 * 300.00016 * 15 13 11 19 19 N 1.33601 * 121.65578 * 359.70276 * 10 9 8 20 20 C 1.31657 * 120.79252 * 359.97438 * 19 10 9 21 21 C 1.54884 * 110.91938 * 91.67583 * 5 3 2 22 22 C 1.54258 * 104.19815 * 156.32880 * 21 5 3 23 23 C 1.53873 * 106.59789 * 336.38910 * 22 21 5 24 24 C 1.54256 * 106.59903 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47103 * 300.00435 * 1 2 3 27 27 H 1.08999 * 109.47292 * 60.00156 * 1 2 3 28 28 H 0.97001 * 119.99734 * 117.67844 * 6 5 3 29 29 H 1.07999 * 120.42896 * 359.97438 * 8 7 6 30 30 H 0.96996 * 120.00273 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.43407 * 179.97438 * 20 19 10 32 32 H 1.09004 * 110.48307 * 37.64635 * 21 5 3 33 33 H 1.09006 * 110.48631 * 275.00977 * 21 5 3 34 34 H 1.08998 * 110.03300 * 217.10651 * 22 21 5 35 35 H 1.08997 * 110.03436 * 95.67726 * 22 21 5 36 36 H 1.09007 * 110.03330 * 119.28865 * 23 22 21 37 37 H 1.09002 * 110.03029 * 240.66231 * 23 22 21 38 38 H 1.08998 * 110.49114 * 142.29226 * 24 23 22 39 39 H 1.09008 * 110.48915 * 264.92973 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1441 0.1368 0.7187 7 6 3.8761 -0.0391 2.0692 8 6 2.9668 0.7941 2.7336 9 7 2.7323 0.5950 4.0138 10 6 3.3579 -0.3793 4.6803 11 6 3.0858 -0.5579 6.0538 12 1 3.5842 -1.3411 6.6056 13 6 2.1694 0.2804 6.7008 14 7 1.5664 1.2287 6.0329 15 14 1.8087 0.0436 8.5182 16 1 3.0616 0.2122 9.2976 17 1 0.8118 1.0515 8.9605 18 1 1.2665 -1.3206 8.7417 19 7 4.2350 -1.1884 4.0796 20 6 4.5128 -1.0504 2.8001 21 6 4.1158 1.3463 -1.4469 22 6 5.4972 2.0156 -1.2942 23 6 5.4529 2.8212 0.0160 24 6 4.0463 2.6128 0.6141 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 4.7139 -0.4937 0.2512 29 1 2.4616 1.5866 2.2017 30 1 0.9320 1.8096 6.4811 31 1 5.2232 -1.7075 2.3205 32 1 3.4638 1.9555 -2.0730 33 1 4.2211 0.3451 -1.8649 34 1 5.6843 2.6822 -2.1361 35 1 6.2764 1.2555 -1.2390 36 1 6.2106 2.4520 0.7072 37 1 5.6194 3.8786 -0.1900 38 1 4.1009 2.5364 1.7000 39 1 3.3827 3.4264 0.3210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167713848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:27 Heat of formation + Delta-G solvation = -32.125572 kcal Electronic energy + Delta-G solvation = -24068.072013 eV Core-core repulsion = 20589.982640 eV Total energy + Delta-G solvation = -3478.089373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.74154 -38.95925 -37.97960 -36.07551 -34.27562 -33.09186 -31.75313 -29.78597 -28.77565 -28.14655 -27.11017 -25.18984 -23.06640 -22.40834 -21.48541 -20.36377 -19.40498 -17.81950 -17.59807 -16.77917 -16.57116 -15.81993 -15.62866 -15.18708 -15.00630 -14.44360 -14.21468 -13.71260 -13.36971 -13.07186 -12.91111 -12.61120 -12.29415 -12.05232 -11.91003 -11.48941 -11.31200 -11.23753 -11.21281 -11.16210 -11.02665 -10.57362 -10.51313 -10.49610 -10.38505 -10.22454 -9.72086 -9.38681 -9.17041 -8.92552 -7.27007 -6.85116 -6.40617 -4.39351 2.39612 2.70802 2.87325 3.04445 3.12562 3.15690 3.22171 3.95293 4.00044 4.46678 4.51696 4.76784 4.82098 5.19484 5.29715 5.37898 5.41712 5.43499 5.44924 5.62095 5.71352 5.74283 5.76149 5.84480 5.90724 5.98136 5.99358 6.13857 6.25883 6.33668 6.37496 6.47331 6.66374 7.06370 7.13039 7.34321 7.90249 8.14122 8.25872 8.43641 8.56538 8.73706 9.20185 10.23489 10.39382 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.005035 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.689261 B = 5559.687754 C = 6015.892658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.341 6.341 3 C 0.461 3.539 4 O -0.515 6.515 5 C 0.199 3.801 6 N -0.721 5.721 7 C -0.042 4.042 8 C 0.102 3.898 9 N -0.475 5.475 10 C 0.371 3.629 11 C -0.412 4.412 12 H 0.089 0.911 13 C 0.068 3.932 14 N -0.724 5.724 15 Si 0.915 3.085 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.265 1.265 19 N -0.566 5.566 20 C 0.112 3.888 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.129 4.129 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.393 0.607 29 H 0.120 0.880 30 H 0.273 0.727 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 1.317 -13.577 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.256 6.256 3 C 0.302 3.698 4 O -0.403 6.403 5 C 0.108 3.892 6 N -0.360 5.360 7 C -0.146 4.146 8 C -0.074 4.074 9 N -0.192 5.192 10 C 0.130 3.870 11 C -0.448 4.448 12 H 0.107 0.893 13 C -0.157 4.157 14 N -0.347 5.347 15 Si 0.739 3.261 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.189 1.189 19 N -0.285 5.285 20 C -0.062 4.062 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.168 4.168 25 H 0.115 0.885 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.227 0.773 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.978 1.784 -12.481 12.763 hybrid contribution -0.195 -0.089 -0.411 0.464 sum 1.783 1.695 -12.893 13.125 Atomic orbital electron populations 1.23231 0.77319 1.03371 1.02173 1.86611 1.22525 1.33259 1.83211 1.24615 0.92557 0.81380 0.71246 1.90633 1.66975 1.36554 1.46115 1.20700 0.84242 0.90009 0.94294 1.43294 1.57618 1.28367 1.06674 1.19066 1.06003 1.04247 0.85317 1.22710 0.94696 0.97295 0.92718 1.69288 1.24787 1.20164 1.04938 1.19809 0.87078 0.85652 0.94436 1.19073 1.20296 1.14085 0.91377 0.89304 1.26016 0.95013 0.94270 1.00416 1.70135 1.16968 1.11128 1.36465 0.86272 0.78943 0.79014 0.81851 1.18921 1.20327 1.18939 1.68566 1.20597 1.30227 1.09131 1.22164 0.97868 0.95430 0.90756 1.22545 0.97525 1.02116 0.93150 1.22078 0.96131 0.99249 0.98017 1.22021 0.97044 0.99849 0.96365 1.22843 0.96731 0.94850 1.02345 0.88501 0.91762 0.92455 0.77284 0.86248 0.91624 0.85462 0.90065 0.90113 0.91453 0.91309 0.91325 0.91619 0.89484 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 101.05 1.07 1.55 16 2 O -0.34 -5.95 10.23 -39.27 -0.40 -6.35 16 3 C 0.46 8.12 4.37 36.00 0.16 8.27 16 4 O -0.52 -9.97 15.47 -18.75 -0.29 -10.26 16 5 C 0.20 3.01 0.71 -130.99 -0.09 2.92 16 6 N -0.72 -11.66 5.01 -44.83 -0.22 -11.88 16 7 C -0.04 -0.89 6.19 -83.32 -0.52 -1.41 16 8 C 0.10 2.50 8.60 -16.93 -0.15 2.36 16 9 N -0.48 -13.43 7.84 -12.49 -0.10 -13.53 16 10 C 0.37 10.62 7.35 -158.22 -1.16 9.46 16 11 C -0.41 -11.56 9.35 -37.80 -0.35 -11.91 16 12 H 0.09 2.40 7.85 -52.49 -0.41 1.98 16 13 C 0.07 1.78 5.50 -17.35 -0.10 1.69 16 14 N -0.72 -19.76 11.41 55.55 0.63 -19.12 16 15 Si 0.92 19.18 29.56 -169.99 -5.02 14.15 16 16 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 17 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 19 N -0.57 -14.97 10.34 -12.49 -0.13 -15.10 16 20 C 0.11 2.51 11.20 -16.93 -0.19 2.32 16 21 C -0.12 -1.27 5.81 -25.08 -0.15 -1.42 16 22 C -0.12 -1.14 6.78 -25.62 -0.17 -1.31 16 23 C -0.12 -1.37 6.78 -25.62 -0.17 -1.54 16 24 C -0.13 -1.98 5.03 -25.09 -0.13 -2.10 16 25 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.06 1.03 8.13 -51.93 -0.42 0.60 16 27 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.39 5.34 8.53 -40.82 -0.35 4.99 16 29 H 0.12 2.86 4.70 -52.49 -0.25 2.62 16 30 H 0.27 6.77 8.29 -40.82 -0.34 6.43 16 31 H 0.13 2.35 8.06 -52.48 -0.42 1.93 16 32 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 33 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.61 5.76 -51.93 -0.30 1.31 16 39 H 0.08 1.31 7.25 -51.92 -0.38 0.93 16 LS Contribution 322.94 15.07 4.87 4.87 Total: -1.00 -32.44 322.94 -7.65 -40.09 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.03 Total: 8.27 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -1.95 Total: 8.86 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.18 Total: -59.64 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.69 Total: -16.62 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.44 -7.65 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167713848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.969 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds