Wall clock time and date at job start Tue Mar 31 2020 06:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 117.00042 * 2 1 4 4 O 1.20821 * 119.99622 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99843 * 180.02562 * 3 2 1 6 6 N 1.46502 * 110.67093 * 328.32365 * 5 3 2 7 7 C 1.38798 * 120.00271 * 297.67530 * 6 5 3 8 8 C 1.40084 * 120.75844 * 5.45461 * 7 6 5 9 9 N 1.31658 * 119.13588 * 179.71063 * 8 7 6 10 10 C 1.33598 * 120.79330 * 0.57653 * 9 8 7 11 11 C 1.41152 * 119.17646 * 179.67316 * 10 9 8 12 12 H 1.07995 * 120.00274 * 180.02562 * 11 10 9 13 13 C 1.40045 * 119.99450 * 0.02679 * 11 10 9 14 14 N 1.30726 * 120.00342 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99840 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.46967 * 59.99817 * 15 13 11 17 17 H 1.48502 * 109.47332 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47427 * 300.00016 * 15 13 11 19 19 N 1.33601 * 121.65578 * 359.70276 * 10 9 8 20 20 C 1.31657 * 120.79252 * 359.97438 * 19 10 9 21 21 C 1.54884 * 110.91938 * 91.67583 * 5 3 2 22 22 C 1.54258 * 104.19815 * 156.32880 * 21 5 3 23 23 C 1.53873 * 106.59789 * 336.38910 * 22 21 5 24 24 C 1.54256 * 106.59903 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47103 * 300.00435 * 1 2 3 27 27 H 1.08999 * 109.47292 * 60.00156 * 1 2 3 28 28 H 0.97001 * 119.99734 * 117.67844 * 6 5 3 29 29 H 1.07999 * 120.42896 * 359.97438 * 8 7 6 30 30 H 0.96996 * 120.00273 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.43407 * 179.97438 * 20 19 10 32 32 H 1.09004 * 110.48307 * 37.64635 * 21 5 3 33 33 H 1.09006 * 110.48631 * 275.00977 * 21 5 3 34 34 H 1.08998 * 110.03300 * 217.10651 * 22 21 5 35 35 H 1.08997 * 110.03436 * 95.67726 * 22 21 5 36 36 H 1.09007 * 110.03330 * 119.28865 * 23 22 21 37 37 H 1.09002 * 110.03029 * 240.66231 * 23 22 21 38 38 H 1.08998 * 110.49114 * 142.29226 * 24 23 22 39 39 H 1.09008 * 110.48915 * 264.92973 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1441 0.1368 0.7187 7 6 3.8761 -0.0391 2.0692 8 6 2.9668 0.7941 2.7336 9 7 2.7323 0.5950 4.0138 10 6 3.3579 -0.3793 4.6803 11 6 3.0858 -0.5579 6.0538 12 1 3.5842 -1.3411 6.6056 13 6 2.1694 0.2804 6.7008 14 7 1.5664 1.2287 6.0329 15 14 1.8087 0.0436 8.5182 16 1 3.0616 0.2122 9.2976 17 1 0.8118 1.0515 8.9605 18 1 1.2665 -1.3206 8.7417 19 7 4.2350 -1.1884 4.0796 20 6 4.5128 -1.0504 2.8001 21 6 4.1158 1.3463 -1.4469 22 6 5.4972 2.0156 -1.2942 23 6 5.4529 2.8212 0.0160 24 6 4.0463 2.6128 0.6141 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 4.7139 -0.4937 0.2512 29 1 2.4616 1.5866 2.2017 30 1 0.9320 1.8096 6.4811 31 1 5.2232 -1.7075 2.3205 32 1 3.4638 1.9555 -2.0730 33 1 4.2211 0.3451 -1.8649 34 1 5.6843 2.6822 -2.1361 35 1 6.2764 1.2555 -1.2390 36 1 6.2106 2.4520 0.7072 37 1 5.6194 3.8786 -0.1900 38 1 4.1009 2.5364 1.7000 39 1 3.3827 3.4264 0.3210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167713848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:26 Heat of formation + Delta-G solvation = -53.773290 kcal Electronic energy + Delta-G solvation = -24069.010729 eV Core-core repulsion = 20589.982640 eV Total energy + Delta-G solvation = -3479.028089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.13003 -40.76543 -39.28228 -37.49392 -35.94360 -34.80021 -33.72545 -31.33443 -29.85520 -29.70232 -28.34734 -26.98814 -24.82783 -23.75193 -23.34620 -21.33949 -20.74204 -19.75590 -19.02683 -18.32694 -17.97741 -17.28552 -17.14173 -16.85054 -16.44617 -15.98096 -15.62313 -15.08537 -14.92739 -14.55612 -14.33713 -14.21696 -13.78877 -13.39216 -13.17337 -13.00915 -12.90240 -12.59501 -12.54916 -12.51230 -12.16595 -12.13744 -11.97406 -11.85797 -11.83448 -11.43081 -11.30309 -11.24056 -11.08815 -10.75485 -9.25429 -8.60746 -8.33179 -6.37939 0.80711 0.97911 1.05683 1.41098 1.53945 1.54910 1.75487 2.24896 2.56523 2.82776 3.39708 3.44232 3.76230 3.89882 3.96055 4.08637 4.16576 4.19296 4.21952 4.31770 4.35894 4.41708 4.46186 4.57922 4.61481 4.69337 4.81689 4.93632 5.05005 5.12276 5.19050 5.25571 5.31894 5.34131 5.46120 5.50377 6.20204 6.31003 6.55497 6.69104 6.76967 7.02689 7.28703 8.27170 8.48324 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.005035 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.689261 B = 5559.687754 C = 6015.892658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.454 3.546 4 O -0.540 6.540 5 C 0.192 3.808 6 N -0.702 5.702 7 C -0.004 4.004 8 C 0.079 3.921 9 N -0.511 5.511 10 C 0.341 3.659 11 C -0.454 4.454 12 H 0.086 0.914 13 C 0.025 3.975 14 N -0.767 5.767 15 Si 0.995 3.005 16 H -0.258 1.258 17 H -0.267 1.267 18 H -0.258 1.258 19 N -0.584 5.584 20 C 0.102 3.898 21 C -0.106 4.106 22 C -0.109 4.109 23 C -0.111 4.111 24 C -0.131 4.131 25 H 0.125 0.875 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.412 0.588 29 H 0.116 0.884 30 H 0.278 0.722 31 H 0.174 0.826 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.992 0.588 -15.632 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.297 3.703 4 O -0.430 6.430 5 C 0.101 3.899 6 N -0.341 5.341 7 C -0.110 4.110 8 C -0.095 4.095 9 N -0.229 5.229 10 C 0.098 3.902 11 C -0.491 4.491 12 H 0.104 0.896 13 C -0.196 4.196 14 N -0.391 5.391 15 Si 0.815 3.185 16 H -0.182 1.182 17 H -0.192 1.192 18 H -0.182 1.182 19 N -0.302 5.302 20 C -0.072 4.072 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.170 4.170 25 H 0.143 0.857 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.250 0.750 29 H 0.134 0.866 30 H 0.088 0.912 31 H 0.191 0.809 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.308 1.049 -14.636 15.042 hybrid contribution -0.568 0.150 -0.027 0.588 sum 2.740 1.198 -14.664 14.966 Atomic orbital electron populations 1.23454 0.75974 1.05199 1.01942 1.86584 1.24047 1.33232 1.83010 1.25134 0.93560 0.81113 0.70479 1.90617 1.67727 1.37306 1.47345 1.21024 0.82789 0.89083 0.97046 1.43238 1.57016 1.29107 1.04696 1.19002 1.02974 1.01797 0.87223 1.22751 0.96187 0.98316 0.92279 1.69176 1.26093 1.20952 1.06650 1.20117 0.88273 0.86581 0.95243 1.19370 1.22307 1.15500 0.91964 0.89575 1.26958 0.93991 0.93288 1.05394 1.70246 1.17895 1.12261 1.38702 0.85080 0.79015 0.79257 0.75162 1.18217 1.19162 1.18239 1.68562 1.20413 1.30164 1.11099 1.22881 0.98368 0.96151 0.89826 1.22628 0.98043 1.03970 0.89763 1.22092 0.95561 0.99682 0.97264 1.22024 0.94017 1.01500 0.97339 1.22810 0.99195 0.94980 1.00022 0.85721 0.94204 0.90485 0.74968 0.86648 0.91196 0.80888 0.89279 0.87727 0.88870 0.89671 0.92149 0.90078 0.93486 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.99 16 2 O -0.35 -12.04 10.23 -51.47 -0.53 -12.57 16 3 C 0.45 15.78 4.37 71.23 0.31 16.09 16 4 O -0.54 -21.20 15.47 21.98 0.34 -20.86 16 5 C 0.19 5.47 0.71 4.14 0.00 5.47 16 6 N -0.70 -21.11 5.01 -295.76 -1.48 -22.59 16 7 C 0.00 -0.17 6.19 38.94 0.24 0.07 16 8 C 0.08 4.02 8.60 85.17 0.73 4.75 16 9 N -0.51 -30.28 7.84 -193.42 -1.52 -31.80 16 10 C 0.34 20.29 7.35 134.95 0.99 21.29 16 11 C -0.45 -26.60 9.35 23.42 0.22 -26.38 16 12 H 0.09 4.85 7.85 -2.91 -0.02 4.83 16 13 C 0.02 1.33 5.50 85.30 0.47 1.80 16 14 N -0.77 -43.79 11.41 21.84 0.25 -43.54 16 15 Si 1.00 40.34 29.56 68.60 2.03 42.37 16 16 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 17 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 18 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 19 N -0.58 -31.27 10.34 -193.42 -2.00 -33.27 16 20 C 0.10 4.43 11.20 85.17 0.95 5.39 16 21 C -0.11 -1.93 5.81 31.66 0.18 -1.74 16 22 C -0.11 -1.62 6.78 31.32 0.21 -1.41 16 23 C -0.11 -2.38 6.78 31.31 0.21 -2.17 16 24 C -0.13 -3.97 5.03 31.66 0.16 -3.81 16 25 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.04 1.31 8.13 -2.38 -0.02 1.29 16 27 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 28 H 0.41 9.52 8.53 -92.71 -0.79 8.73 16 29 H 0.12 5.82 4.70 -2.91 -0.01 5.81 16 30 H 0.28 14.38 8.29 -92.71 -0.77 13.61 16 31 H 0.17 5.80 8.06 -2.91 -0.02 5.78 16 32 H 0.09 1.55 8.05 -2.38 -0.02 1.53 16 33 H 0.10 1.46 8.08 -2.38 -0.02 1.44 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.79 5.76 -2.39 -0.01 1.78 16 39 H 0.08 2.45 7.25 -2.38 -0.02 2.43 16 Total: -1.00 -75.70 322.94 3.28 -72.42 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.30 Total: 28.50 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 5.89 Total: 21.32 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -4.75 Total: -131.19 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.19 Total: -33.43 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -75.70 3.28 -72.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167713848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.650 kcal (2) G-P(sol) polarization free energy of solvation -75.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds