Wall clock time and date at job start Tue Mar 31 2020 06:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34665 * 116.99751 * 2 1 4 4 O 1.21425 * 120.00425 * 359.97438 * 3 2 1 5 5 C 1.48059 * 119.99509 * 179.72628 * 3 2 1 6 6 C 1.39976 * 121.11842 * 359.97438 * 5 3 2 7 7 N 1.31747 * 119.82011 * 179.71380 * 6 5 3 8 8 N 1.28271 * 122.44606 * 0.58693 * 7 6 5 9 9 C 1.32416 * 122.42257 * 359.69684 * 8 7 6 10 10 N 1.39071 * 120.09682 * 179.97438 * 9 8 7 11 11 C 1.46508 * 120.00115 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.40878 * 35.13800 * 11 10 9 13 13 C 1.52957 * 109.41377 * 155.00252 * 11 10 9 14 14 C 1.53229 * 109.40035 * 183.70935 * 13 11 10 15 15 C 1.51266 * 108.53670 * 305.36730 * 14 13 11 16 16 C 1.37879 * 120.85294 * 231.33171 * 15 14 13 17 17 N 1.31509 * 120.00087 * 164.56804 * 16 15 14 18 18 Si 1.86799 * 119.99780 * 344.56159 * 16 15 14 19 19 H 1.48502 * 109.47238 * 354.64512 * 18 16 15 20 20 H 1.48505 * 109.47099 * 114.64057 * 18 16 15 21 21 H 1.48500 * 109.47255 * 234.64105 * 18 16 15 22 22 C 1.51271 * 118.29785 * 51.35177 * 15 14 13 23 23 C 1.52962 * 109.41334 * 275.35477 * 11 10 9 24 24 C 1.39455 * 119.80365 * 359.97438 * 9 8 7 25 25 H 1.09002 * 109.47378 * 300.00065 * 1 2 3 26 26 H 1.09004 * 109.47220 * 60.00375 * 1 2 3 27 27 H 1.08998 * 109.47251 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.08825 * 359.97438 * 6 5 3 29 29 H 0.97002 * 120.00353 * 0.02562 * 10 9 8 30 30 H 1.09006 * 109.47596 * 303.68289 * 13 11 10 31 31 H 1.08996 * 109.48471 * 63.72455 * 13 11 10 32 32 H 1.08996 * 109.62853 * 65.08420 * 14 13 11 33 33 H 1.09008 * 109.62424 * 185.65727 * 14 13 11 34 34 H 0.97004 * 120.00194 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.62848 * 68.36837 * 22 15 14 36 36 H 1.09001 * 109.62154 * 188.74421 * 22 15 14 37 37 H 1.08990 * 109.48158 * 296.27543 * 23 11 10 38 38 H 1.09007 * 109.48091 * 56.31618 * 23 11 10 39 39 H 1.08003 * 121.12938 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1999 0.0000 4 8 1.4020 2.2183 -0.0005 5 6 3.5419 1.2773 0.0061 6 6 4.3270 0.1185 0.0125 7 7 5.6407 0.2171 0.0122 8 7 6.2459 1.3481 0.0172 9 6 5.5953 2.5014 0.0172 10 7 6.3007 3.7000 0.0234 11 6 5.5788 4.9749 0.0240 12 1 4.6663 4.8742 0.6117 13 6 6.4635 6.0598 0.6402 14 6 5.6756 7.3713 0.7256 15 6 5.1475 7.7056 -0.6519 16 6 5.3578 8.9501 -1.2070 17 7 5.1703 9.1356 -2.4953 18 14 5.9090 10.3725 -0.1289 19 1 5.9221 9.9408 1.2919 20 1 7.2744 10.7973 -0.5297 21 1 4.9688 11.5104 -0.2919 22 6 4.3822 6.6398 -1.4046 23 6 5.2169 5.3549 -1.4128 24 6 4.2008 2.5107 0.0111 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.8570 -0.8539 0.0135 29 1 7.2707 3.6920 0.0273 30 1 6.7701 5.7541 1.6405 31 1 7.3463 6.2059 0.0179 32 1 4.8425 7.2535 1.4185 33 1 6.3317 8.1708 1.0701 34 1 5.3179 10.0112 -2.8858 35 1 3.4293 6.4542 -0.9090 36 1 4.2042 6.9707 -2.4278 37 1 6.1292 5.5176 -1.9865 38 1 4.6400 4.5495 -1.8676 39 1 3.6486 3.4388 0.0106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167841514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:21 Heat of formation + Delta-G solvation = -30.819740 kcal Electronic energy + Delta-G solvation = -22985.326174 eV Core-core repulsion = 19507.293426 eV Total energy + Delta-G solvation = -3478.032748 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.26764 -40.20682 -37.91848 -36.75377 -34.89206 -33.34788 -32.25283 -30.28696 -29.79677 -28.32386 -27.16864 -25.38453 -24.05984 -21.92475 -21.82428 -21.22399 -19.65084 -18.50958 -18.08817 -16.93777 -16.66591 -16.47707 -16.18241 -15.76127 -15.03849 -14.72394 -14.45211 -13.91214 -13.63945 -13.54439 -13.25171 -12.99979 -12.48109 -12.46749 -12.23526 -11.89427 -11.44619 -11.24806 -11.09665 -11.09380 -11.02518 -10.90595 -10.58859 -10.34978 -10.25876 -10.02201 -9.67426 -9.61227 -9.09597 -8.92399 -8.46354 -7.82968 -6.22757 -4.09489 0.20232 1.13218 2.25563 2.31096 3.11761 3.20795 3.31018 3.32465 3.66673 4.27872 4.30344 4.34780 4.55103 4.77810 4.83527 4.88775 4.92526 5.04357 5.21024 5.35845 5.49235 5.66160 5.82696 5.91153 5.96100 6.00172 6.33393 6.40917 6.53758 6.61834 6.70290 6.90594 6.96335 7.24063 7.27476 7.40091 7.54563 7.56990 7.71217 7.74848 8.27073 8.82524 8.85989 9.44189 10.86800 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021146 B = 0.003937 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.828827 B = 7110.416054 C = 7956.752189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.351 6.351 3 C 0.514 3.486 4 O -0.486 6.486 5 C -0.086 4.086 6 C 0.016 3.984 7 N -0.203 5.203 8 N -0.299 5.299 9 C 0.351 3.649 10 N -0.697 5.697 11 C 0.154 3.846 12 H 0.073 0.927 13 C -0.111 4.111 14 C -0.011 4.011 15 C -0.499 4.499 16 C 0.082 3.918 17 N -0.879 5.879 18 Si 0.880 3.120 19 H -0.261 1.261 20 H -0.283 1.283 21 H -0.285 1.285 22 C 0.011 3.989 23 C -0.119 4.119 24 C -0.108 4.108 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.178 0.822 29 H 0.408 0.592 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.017 0.983 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.005 0.995 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.851 -15.477 5.231 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.267 6.267 3 C 0.356 3.644 4 O -0.372 6.372 5 C -0.098 4.098 6 C -0.154 4.154 7 N -0.043 5.043 8 N -0.152 5.152 9 C 0.107 3.893 10 N -0.327 5.327 11 C 0.051 3.949 12 H 0.091 0.909 13 C -0.149 4.149 14 C -0.049 4.049 15 C -0.518 4.518 16 C -0.122 4.122 17 N -0.516 5.516 18 Si 0.707 3.293 19 H -0.186 1.186 20 H -0.209 1.209 21 H -0.211 1.211 22 C -0.026 4.026 23 C -0.158 4.158 24 C -0.142 4.142 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.123 0.877 28 H 0.195 0.805 29 H 0.244 0.756 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.023 0.977 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.736 -15.599 5.076 16.824 hybrid contribution -0.977 1.618 0.365 1.925 sum -4.714 -13.981 5.441 15.726 Atomic orbital electron populations 1.23352 0.75366 1.04009 1.02999 1.86515 1.23967 1.32008 1.84207 1.20873 0.88376 0.81837 0.73326 1.90897 1.66335 1.35916 1.44088 1.19986 0.90782 0.95051 1.03986 1.24197 0.91481 0.98945 1.00824 1.72756 1.08650 1.16285 1.06631 1.72845 1.31172 0.93402 1.17830 1.20047 0.89050 0.89315 0.90900 1.45198 1.09285 1.01727 1.76534 1.21321 0.95053 0.79934 0.98636 0.90890 1.21837 0.98857 0.96377 0.97867 1.19712 0.95399 0.92508 0.97305 1.19952 1.35289 0.97386 0.99136 1.24821 0.94626 0.98289 0.94484 1.69907 1.48002 1.23365 1.10283 0.86771 0.78330 0.82376 0.81802 1.18565 1.20890 1.21093 1.19373 0.93310 0.90571 0.99396 1.22094 1.01028 0.99052 0.93669 1.22195 0.93807 0.99291 0.98949 0.91571 0.91497 0.87677 0.80463 0.75598 0.94025 0.92036 0.96469 0.94320 0.92506 0.97680 0.92220 0.92318 0.95096 0.81771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.62 9.93 -40.40 -0.40 -4.03 16 3 C 0.51 6.72 7.93 34.76 0.28 7.00 16 4 O -0.49 -7.66 16.27 -19.21 -0.31 -7.97 16 5 C -0.09 -1.17 5.91 -104.62 -0.62 -1.78 16 6 C 0.02 0.20 10.92 -16.94 -0.19 0.02 16 7 N -0.20 -3.04 11.48 30.80 0.35 -2.69 16 8 N -0.30 -4.81 11.51 31.22 0.36 -4.45 16 9 C 0.35 5.48 7.72 -154.82 -1.20 4.29 16 10 N -0.70 -10.73 5.25 -53.85 -0.28 -11.02 16 11 C 0.15 2.68 2.05 -67.97 -0.14 2.54 16 12 H 0.07 1.28 6.50 -51.93 -0.34 0.94 16 13 C -0.11 -2.01 5.40 -26.63 -0.14 -2.15 16 14 C -0.01 -0.24 5.47 -27.49 -0.15 -0.39 16 15 C -0.50 -12.36 5.44 -98.92 -0.54 -12.90 16 16 C 0.08 2.14 5.43 -17.82 -0.10 2.04 16 17 N -0.88 -24.39 12.81 55.43 0.71 -23.68 16 18 Si 0.88 19.99 27.63 -169.99 -4.70 15.29 16 19 H -0.26 -5.68 6.14 56.52 0.35 -5.33 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.01 0.27 5.99 -27.49 -0.16 0.11 16 23 C -0.12 -2.39 5.44 -26.63 -0.14 -2.53 16 24 C -0.11 -1.63 8.45 -38.53 -0.33 -1.95 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.18 1.64 7.71 -52.49 -0.40 1.24 16 29 H 0.41 5.77 8.73 -40.82 -0.36 5.41 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.04 0.83 5.02 -51.92 -0.26 0.57 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 35 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.06 1.57 7.11 -51.93 -0.37 1.20 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.03 0.58 7.74 -51.92 -0.40 0.18 16 39 H 0.16 2.58 6.04 -52.48 -0.32 2.27 16 LS Contribution 324.22 15.07 4.89 4.89 Total: -1.00 -28.82 324.22 -6.76 -35.58 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.02 Total: 2.47 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.36 Total: -4.39 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 1.14 Total: -41.84 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.71 Total: -11.99 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.70 Total: 15.29 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.82 -6.76 -35.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.759 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds