Wall clock time and date at job start Tue Mar 31 2020 06:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34665 * 116.99751 * 2 1 4 4 O 1.21425 * 120.00425 * 359.97438 * 3 2 1 5 5 C 1.48059 * 119.99509 * 179.72628 * 3 2 1 6 6 C 1.39976 * 121.11842 * 359.97438 * 5 3 2 7 7 N 1.31747 * 119.82011 * 179.71380 * 6 5 3 8 8 N 1.28271 * 122.44606 * 0.58693 * 7 6 5 9 9 C 1.32416 * 122.42257 * 359.69684 * 8 7 6 10 10 N 1.39071 * 120.09682 * 179.97438 * 9 8 7 11 11 C 1.46508 * 120.00115 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.40878 * 35.13800 * 11 10 9 13 13 C 1.52957 * 109.41377 * 155.00252 * 11 10 9 14 14 C 1.53229 * 109.40035 * 183.70935 * 13 11 10 15 15 C 1.51266 * 108.53670 * 305.36730 * 14 13 11 16 16 C 1.37879 * 120.85294 * 231.33171 * 15 14 13 17 17 N 1.31509 * 120.00087 * 164.56804 * 16 15 14 18 18 Si 1.86799 * 119.99780 * 344.56159 * 16 15 14 19 19 H 1.48502 * 109.47238 * 354.64512 * 18 16 15 20 20 H 1.48505 * 109.47099 * 114.64057 * 18 16 15 21 21 H 1.48500 * 109.47255 * 234.64105 * 18 16 15 22 22 C 1.51271 * 118.29785 * 51.35177 * 15 14 13 23 23 C 1.52962 * 109.41334 * 275.35477 * 11 10 9 24 24 C 1.39455 * 119.80365 * 359.97438 * 9 8 7 25 25 H 1.09002 * 109.47378 * 300.00065 * 1 2 3 26 26 H 1.09004 * 109.47220 * 60.00375 * 1 2 3 27 27 H 1.08998 * 109.47251 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.08825 * 359.97438 * 6 5 3 29 29 H 0.97002 * 120.00353 * 0.02562 * 10 9 8 30 30 H 1.09006 * 109.47596 * 303.68289 * 13 11 10 31 31 H 1.08996 * 109.48471 * 63.72455 * 13 11 10 32 32 H 1.08996 * 109.62853 * 65.08420 * 14 13 11 33 33 H 1.09008 * 109.62424 * 185.65727 * 14 13 11 34 34 H 0.97004 * 120.00194 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.62848 * 68.36837 * 22 15 14 36 36 H 1.09001 * 109.62154 * 188.74421 * 22 15 14 37 37 H 1.08990 * 109.48158 * 296.27543 * 23 11 10 38 38 H 1.09007 * 109.48091 * 56.31618 * 23 11 10 39 39 H 1.08003 * 121.12938 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1999 0.0000 4 8 1.4020 2.2183 -0.0005 5 6 3.5419 1.2773 0.0061 6 6 4.3270 0.1185 0.0125 7 7 5.6407 0.2171 0.0122 8 7 6.2459 1.3481 0.0172 9 6 5.5953 2.5014 0.0172 10 7 6.3007 3.7000 0.0234 11 6 5.5788 4.9749 0.0240 12 1 4.6663 4.8742 0.6117 13 6 6.4635 6.0598 0.6402 14 6 5.6756 7.3713 0.7256 15 6 5.1475 7.7056 -0.6519 16 6 5.3578 8.9501 -1.2070 17 7 5.1703 9.1356 -2.4953 18 14 5.9090 10.3725 -0.1289 19 1 5.9221 9.9408 1.2919 20 1 7.2744 10.7973 -0.5297 21 1 4.9688 11.5104 -0.2919 22 6 4.3822 6.6398 -1.4046 23 6 5.2169 5.3549 -1.4128 24 6 4.2008 2.5107 0.0111 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.8570 -0.8539 0.0135 29 1 7.2707 3.6920 0.0273 30 1 6.7701 5.7541 1.6405 31 1 7.3463 6.2059 0.0179 32 1 4.8425 7.2535 1.4185 33 1 6.3317 8.1708 1.0701 34 1 5.3179 10.0112 -2.8858 35 1 3.4293 6.4542 -0.9090 36 1 4.2042 6.9707 -2.4278 37 1 6.1292 5.5176 -1.9865 38 1 4.6400 4.5495 -1.8676 39 1 3.6486 3.4388 0.0106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167841514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:20 Heat of formation + Delta-G solvation = -48.156343 kcal Electronic energy + Delta-G solvation = -22986.077946 eV Core-core repulsion = 19507.293426 eV Total energy + Delta-G solvation = -3478.784520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.37517 -41.23221 -39.39120 -37.70991 -36.39642 -34.47277 -33.97026 -31.68067 -31.49656 -29.08839 -28.75500 -26.40376 -25.33155 -23.60411 -23.32068 -22.40790 -21.22647 -19.55653 -19.30169 -18.05395 -17.94118 -17.57871 -17.43530 -16.96786 -16.36364 -16.18580 -16.02128 -15.15528 -14.81808 -14.75514 -14.48926 -14.39887 -14.13802 -13.92765 -13.53997 -13.14175 -12.97510 -12.81752 -12.70403 -12.32131 -12.16968 -12.09287 -11.88972 -11.82747 -11.72601 -11.46176 -11.37319 -10.91994 -10.76673 -10.69446 -10.39601 -9.09563 -8.19659 -6.08768 -0.92327 0.02150 1.25668 1.34174 1.38808 1.45451 1.53876 1.89751 2.42005 2.53904 3.08385 3.24063 3.29904 3.47223 3.64052 3.78494 3.92164 4.15292 4.28697 4.35253 4.35414 4.42578 4.69296 4.72193 4.74997 4.85163 4.91018 4.97008 5.01914 5.10105 5.14357 5.18547 5.27514 5.57164 5.61891 5.72516 5.83418 5.91826 6.32701 6.42839 6.54080 6.95386 7.46948 7.68034 8.91849 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021146 B = 0.003937 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.828827 B = 7110.416054 C = 7956.752189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.520 3.480 4 O -0.518 6.518 5 C -0.083 4.083 6 C 0.037 3.963 7 N -0.221 5.221 8 N -0.312 5.312 9 C 0.345 3.655 10 N -0.694 5.694 11 C 0.170 3.830 12 H 0.076 0.924 13 C -0.104 4.104 14 C -0.015 4.015 15 C -0.505 4.505 16 C 0.026 3.974 17 N -0.926 5.926 18 Si 0.935 3.065 19 H -0.241 1.241 20 H -0.283 1.283 21 H -0.291 1.291 22 C 0.008 3.992 23 C -0.107 4.107 24 C -0.118 4.118 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.143 0.857 28 H 0.215 0.785 29 H 0.415 0.585 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.024 0.976 33 H 0.041 0.959 34 H 0.262 0.738 35 H 0.004 0.996 36 H 0.022 0.978 37 H 0.043 0.957 38 H 0.036 0.964 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 -17.632 7.089 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.258 6.258 3 C 0.364 3.636 4 O -0.407 6.407 5 C -0.095 4.095 6 C -0.134 4.134 7 N -0.060 5.060 8 N -0.165 5.165 9 C 0.101 3.899 10 N -0.326 5.326 11 C 0.065 3.935 12 H 0.094 0.906 13 C -0.143 4.143 14 C -0.053 4.053 15 C -0.524 4.524 16 C -0.173 4.173 17 N -0.565 5.565 18 Si 0.760 3.240 19 H -0.164 1.164 20 H -0.210 1.210 21 H -0.218 1.218 22 C -0.030 4.030 23 C -0.147 4.147 24 C -0.153 4.153 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.161 0.839 28 H 0.231 0.769 29 H 0.252 0.748 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.022 0.978 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.766 -17.813 6.960 19.492 hybrid contribution -1.128 2.098 -0.244 2.395 sum -4.894 -15.715 6.716 17.777 Atomic orbital electron populations 1.23723 0.73387 1.06485 1.02918 1.86510 1.25769 1.30142 1.83336 1.20783 0.88081 0.82199 0.72567 1.90893 1.66890 1.37167 1.45760 1.20109 0.91372 0.94856 1.03197 1.24702 0.90531 1.00030 0.98112 1.72733 1.09793 1.15828 1.07599 1.72798 1.31852 0.93676 1.18135 1.20031 0.89141 0.89235 0.91469 1.44839 1.09423 1.00965 1.77339 1.20939 0.95360 0.80823 0.96354 0.90605 1.21707 0.98140 0.94758 0.99680 1.19747 0.95997 0.94379 0.95186 1.20583 1.33959 0.97254 1.00640 1.25611 0.95538 1.00828 0.95372 1.70047 1.50728 1.23652 1.12087 0.85889 0.77471 0.79299 0.81302 1.16401 1.20965 1.21806 1.19323 0.94033 0.92475 0.97174 1.21882 0.99600 0.97348 0.95836 1.22194 0.93759 0.99753 0.99571 0.91552 0.91785 0.83911 0.76871 0.74766 0.90920 0.92318 0.95741 0.94085 0.92863 0.97786 0.95907 0.93858 0.94487 0.82720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.34 -6.10 9.93 -55.75 -0.55 -6.65 16 3 C 0.52 12.68 7.93 70.43 0.56 13.24 16 4 O -0.52 -15.90 16.27 20.08 0.33 -15.57 16 5 C -0.08 -2.09 5.91 -19.86 -0.12 -2.21 16 6 C 0.04 0.81 10.92 85.13 0.93 1.74 16 7 N -0.22 -6.10 11.48 -56.47 -0.65 -6.75 16 8 N -0.31 -9.51 11.51 -55.14 -0.63 -10.14 16 9 C 0.34 10.29 7.72 133.11 1.03 11.32 16 10 N -0.69 -20.33 5.25 -324.30 -1.70 -22.03 16 11 C 0.17 5.70 2.05 44.96 0.09 5.79 16 12 H 0.08 2.55 6.50 -2.39 -0.02 2.54 16 13 C -0.10 -3.56 5.40 30.66 0.17 -3.40 16 14 C -0.01 -0.62 5.47 30.10 0.16 -0.45 16 15 C -0.51 -25.21 5.44 -16.17 -0.09 -25.30 16 16 C 0.03 1.36 5.43 84.66 0.46 1.82 16 17 N -0.93 -53.37 12.81 21.45 0.27 -53.10 16 18 Si 0.93 41.23 27.63 68.60 1.90 43.13 16 19 H -0.24 -9.71 6.14 99.48 0.61 -9.10 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 22 C 0.01 0.39 5.99 30.10 0.18 0.57 16 23 C -0.11 -4.33 5.44 30.66 0.17 -4.17 16 24 C -0.12 -3.43 8.45 22.95 0.19 -3.24 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.21 3.05 7.71 -2.91 -0.02 3.02 16 29 H 0.41 11.02 8.73 -92.71 -0.81 10.21 16 30 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.04 1.66 5.02 -2.38 -0.01 1.65 16 34 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 35 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.02 1.24 7.11 -2.39 -0.02 1.23 16 37 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.04 1.42 7.74 -2.38 -0.02 1.40 16 39 H 0.16 4.80 6.04 -2.91 -0.02 4.78 16 Total: -1.00 -63.41 324.22 4.08 -59.33 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.19 Total: 14.54 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 4.93 Total: -2.75 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -2.71 Total: -92.02 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.23 Total: -22.22 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.90 Total: 43.13 kcal Total: -63.41 4.08 -59.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.178 kcal (2) G-P(sol) polarization free energy of solvation -63.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds