Wall clock time and date at job start Tue Mar 31 2020 06:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34631 * 117.00087 * 2 1 4 4 O 1.21347 * 119.99895 * 0.02562 * 3 2 1 5 5 C 1.48673 * 120.00057 * 180.02562 * 3 2 1 6 6 N 1.30699 * 119.03069 * 0.02562 * 5 3 2 7 7 C 1.35305 * 120.56426 * 179.97438 * 6 5 3 8 8 N 1.31854 * 120.59426 * 179.97438 * 7 6 5 9 9 C 1.46508 * 119.99735 * 0.02562 * 8 7 6 10 10 H 1.09000 * 109.41236 * 359.85574 * 9 8 7 11 11 C 1.52957 * 109.40981 * 119.64934 * 9 8 7 12 12 C 1.53234 * 109.39991 * 183.70330 * 11 9 8 13 13 C 1.51276 * 108.53605 * 305.37009 * 12 11 9 14 14 C 1.37878 * 120.84933 * 231.33233 * 13 12 11 15 15 N 1.31511 * 120.00080 * 180.02562 * 14 13 12 16 16 Si 1.86806 * 119.99961 * 0.02562 * 14 13 12 17 17 H 1.48501 * 109.46734 * 90.00697 * 16 14 13 18 18 H 1.48497 * 109.47179 * 210.00533 * 16 14 13 19 19 H 1.48500 * 109.47065 * 330.00345 * 16 14 13 20 20 C 1.51270 * 118.29843 * 51.34531 * 13 12 11 21 21 C 1.52966 * 109.40824 * 239.99653 * 9 8 7 22 22 C 1.46850 * 118.80829 * 0.02562 * 7 6 5 23 23 C 1.35060 * 118.24138 * 359.97438 * 22 7 6 24 24 N 1.36069 * 119.02638 * 179.97438 * 5 3 2 25 25 H 0.96994 * 119.41555 * 0.04415 * 24 5 3 26 26 H 1.08995 * 109.47656 * 59.99667 * 1 2 3 27 27 H 1.09002 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47037 * 299.99583 * 1 2 3 29 29 H 1.08998 * 109.48013 * 303.67462 * 11 9 8 30 30 H 1.08999 * 109.48590 * 63.72535 * 11 9 8 31 31 H 1.08999 * 109.62683 * 185.65715 * 12 11 9 32 32 H 1.08997 * 109.78677 * 65.17805 * 12 11 9 33 33 H 0.96994 * 120.00088 * 179.97438 * 15 14 13 34 34 H 1.09000 * 109.62164 * 188.94006 * 20 13 12 35 35 H 1.08996 * 109.62121 * 68.37197 * 20 13 12 36 36 H 1.08995 * 109.48248 * 296.27769 * 21 9 8 37 37 H 1.08999 * 109.47998 * 56.32414 * 21 9 8 38 38 H 1.07995 * 120.87419 * 180.02562 * 22 7 6 39 39 H 1.07998 * 120.36333 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4022 2.2173 0.0005 5 6 3.5478 1.2774 -0.0006 6 7 4.2410 0.1693 -0.0016 7 6 5.5936 0.2040 -0.0027 8 7 6.2935 -0.9135 -0.0032 9 6 5.6070 -2.2078 -0.0032 10 1 4.5291 -2.0461 -0.0001 11 6 5.9988 -2.9910 -1.2572 12 6 5.2107 -4.3043 -1.3040 13 6 5.4395 -5.0489 -0.0072 14 6 5.8386 -6.3686 -0.0106 15 7 6.0322 -7.0000 1.1267 16 14 6.1044 -7.2599 -1.6307 17 1 7.5150 -7.0908 -2.0630 18 1 5.8103 -8.7048 -1.4549 19 1 5.1991 -6.6925 -2.6621 20 6 5.2190 -4.3085 1.2934 21 6 6.0067 -2.9951 1.2459 22 6 6.2681 1.5084 -0.0021 23 6 5.5048 2.6226 -0.0010 24 7 4.1449 2.5001 -0.0011 25 1 3.5947 3.2989 -0.0004 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 5.7696 -2.3979 -2.1425 30 1 7.0665 -3.2085 -1.2313 31 1 5.5586 -4.9104 -2.1404 32 1 4.1480 -4.0929 -1.4222 33 1 6.3126 -7.9285 1.1243 34 1 5.5722 -4.9174 2.1256 35 1 4.1574 -4.0946 1.4173 36 1 7.0742 -3.2124 1.2125 37 1 5.7832 -2.4049 2.1346 38 1 7.3460 1.5749 -0.0033 39 1 5.9649 3.5996 -0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:50 Heat of formation + Delta-G solvation = -18.051041 kcal Electronic energy + Delta-G solvation = -23082.577385 eV Core-core repulsion = 19605.098329 eV Total energy + Delta-G solvation = -3477.479056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.37744 -40.03585 -37.27659 -36.83386 -34.96420 -33.24113 -32.16668 -30.37605 -29.40911 -28.37424 -27.01080 -25.51532 -23.42322 -21.90574 -21.29003 -20.77986 -19.26884 -19.05703 -18.27162 -17.24259 -16.97990 -16.89278 -15.89541 -15.46674 -14.99917 -14.34551 -14.21275 -13.88528 -13.53301 -13.28102 -13.10005 -12.86314 -12.43423 -12.28216 -12.17970 -11.63388 -11.40866 -11.30750 -11.13097 -10.78420 -10.72207 -10.62463 -10.34518 -10.21901 -10.13873 -9.79559 -9.39543 -8.78854 -8.57725 -8.53419 -8.32803 -7.34694 -5.97630 -3.86812 0.37999 1.38535 1.69612 2.17686 3.01388 3.35771 3.43244 3.45971 3.80655 3.82201 4.29371 4.49288 4.64050 4.83688 4.93821 5.01811 5.21773 5.31230 5.35754 5.61332 5.81250 5.94148 6.10573 6.22490 6.36743 6.59896 6.73567 6.78170 6.89205 6.99647 7.08859 7.15322 7.19163 7.27366 7.34733 7.59545 7.78499 7.84045 7.92627 7.98672 8.42805 8.54697 9.10209 9.67632 11.12354 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.004311 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.107733 B = 6493.689984 C = 7333.003500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.314 6.314 3 C 0.534 3.466 4 O -0.498 6.498 5 C 0.373 3.627 6 N -0.475 5.475 7 C 0.301 3.699 8 N -0.488 5.488 9 C 0.079 3.921 10 H 0.064 0.936 11 C -0.088 4.088 12 C -0.013 4.013 13 C -0.482 4.482 14 C 0.074 3.926 15 N -0.893 5.893 16 Si 0.887 3.113 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.268 1.268 20 C 0.012 3.988 21 C -0.088 4.088 22 C -0.179 4.179 23 C 0.098 3.902 24 N -0.625 5.625 25 H 0.422 0.578 26 H 0.067 0.933 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.054 0.946 31 H 0.029 0.971 32 H 0.017 0.983 33 H 0.263 0.737 34 H 0.057 0.943 35 H 0.003 0.997 36 H 0.052 0.948 37 H 0.023 0.977 38 H 0.155 0.845 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.106 21.306 -2.411 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.226 6.226 3 C 0.374 3.626 4 O -0.384 6.384 5 C 0.094 3.906 6 N -0.203 5.203 7 C 0.023 3.977 8 N -0.205 5.205 9 C -0.031 4.031 10 H 0.083 0.917 11 C -0.126 4.126 12 C -0.051 4.051 13 C -0.501 4.501 14 C -0.128 4.128 15 N -0.531 5.531 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.193 1.193 20 C -0.026 4.026 21 C -0.127 4.127 22 C -0.210 4.210 23 C -0.025 4.025 24 N -0.250 5.250 25 H 0.259 0.741 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.173 0.827 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.489 19.917 -2.328 21.076 hybrid contribution -0.528 0.597 -0.819 1.143 sum -7.018 20.513 -3.146 21.908 Atomic orbital electron populations 1.23506 0.74780 1.04932 1.02710 1.86738 1.23934 1.29911 1.82057 1.20389 0.86633 0.82526 0.73087 1.90860 1.65822 1.36114 1.45638 1.20601 0.90925 0.82879 0.96220 1.69398 1.10235 1.24537 1.16125 1.21184 0.84031 0.93925 0.98562 1.73343 1.35263 0.98886 1.13027 1.21654 0.97561 0.86331 0.97506 0.91748 1.21523 1.00752 0.96744 0.93590 1.19747 0.95472 0.93051 0.96872 1.20057 1.44400 0.95127 0.90517 1.24834 0.94954 0.96815 0.96172 1.69841 1.46854 1.11118 1.25309 0.86672 0.78817 0.78359 0.84582 1.20447 1.21736 1.19267 1.19376 0.93912 0.91402 0.97891 1.21592 1.00995 0.97185 0.92896 1.22265 1.01245 0.89560 1.07896 1.21757 0.80974 1.00524 0.99243 1.41589 1.07017 1.07931 1.68467 0.74067 0.91401 0.86945 0.91375 0.95608 0.92691 0.95235 0.96476 0.92756 0.92423 0.97838 0.92890 0.95826 0.82734 0.80811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.31 -4.04 10.35 -40.31 -0.42 -4.45 16 3 C 0.53 6.51 8.00 35.04 0.28 6.79 16 4 O -0.50 -5.83 16.16 -19.15 -0.31 -6.14 16 5 C 0.37 4.78 7.67 -155.27 -1.19 3.58 16 6 N -0.47 -8.02 8.55 -8.93 -0.08 -8.10 16 7 C 0.30 5.24 7.60 -155.83 -1.18 4.05 16 8 N -0.49 -10.17 10.21 -52.73 -0.54 -10.71 16 9 C 0.08 1.83 2.70 -67.97 -0.18 1.65 16 10 H 0.06 1.55 6.70 -51.93 -0.35 1.20 16 11 C -0.09 -2.07 5.54 -26.63 -0.15 -2.22 16 12 C -0.01 -0.34 5.59 -27.48 -0.15 -0.49 16 13 C -0.48 -13.58 5.51 -98.92 -0.55 -14.13 16 14 C 0.07 2.13 5.46 -17.82 -0.10 2.03 16 15 N -0.89 -26.80 12.73 55.43 0.71 -26.10 16 16 Si 0.89 22.11 27.27 -169.99 -4.64 17.48 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.27 -6.47 6.46 56.52 0.37 -6.11 16 20 C 0.01 0.33 5.97 -27.49 -0.16 0.16 16 21 C -0.09 -2.17 5.54 -26.63 -0.15 -2.32 16 22 C -0.18 -2.15 10.30 -37.23 -0.38 -2.53 16 23 C 0.10 0.77 11.29 -16.59 -0.19 0.58 16 24 N -0.62 -5.46 5.30 -10.58 -0.06 -5.51 16 25 H 0.42 2.45 8.16 -40.82 -0.33 2.12 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.03 0.73 4.78 -51.93 -0.25 0.49 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.06 1.68 7.07 -51.93 -0.37 1.31 16 35 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 36 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 327.39 15.07 4.93 4.93 Total: -1.00 -35.13 327.39 -8.55 -43.68 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -5.12 Total: -3.59 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.04 Total: -1.49 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.03 Total: -50.42 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.73 Total: -10.60 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.64 Total: 17.48 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.13 -8.55 -43.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.628 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds