Wall clock time and date at job start Tue Mar 31 2020 06:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34631 * 117.00087 * 2 1 4 4 O 1.21347 * 119.99895 * 0.02562 * 3 2 1 5 5 C 1.48673 * 120.00057 * 180.02562 * 3 2 1 6 6 N 1.30699 * 119.03069 * 0.02562 * 5 3 2 7 7 C 1.35305 * 120.56426 * 179.97438 * 6 5 3 8 8 N 1.31854 * 120.59426 * 179.97438 * 7 6 5 9 9 C 1.46508 * 119.99735 * 0.02562 * 8 7 6 10 10 H 1.09000 * 109.41236 * 359.85574 * 9 8 7 11 11 C 1.52957 * 109.40981 * 119.64934 * 9 8 7 12 12 C 1.53234 * 109.39991 * 183.70330 * 11 9 8 13 13 C 1.51276 * 108.53605 * 305.37009 * 12 11 9 14 14 C 1.37878 * 120.84933 * 231.33233 * 13 12 11 15 15 N 1.31511 * 120.00080 * 180.02562 * 14 13 12 16 16 Si 1.86806 * 119.99961 * 0.02562 * 14 13 12 17 17 H 1.48501 * 109.46734 * 90.00697 * 16 14 13 18 18 H 1.48497 * 109.47179 * 210.00533 * 16 14 13 19 19 H 1.48500 * 109.47065 * 330.00345 * 16 14 13 20 20 C 1.51270 * 118.29843 * 51.34531 * 13 12 11 21 21 C 1.52966 * 109.40824 * 239.99653 * 9 8 7 22 22 C 1.46850 * 118.80829 * 0.02562 * 7 6 5 23 23 C 1.35060 * 118.24138 * 359.97438 * 22 7 6 24 24 N 1.36069 * 119.02638 * 179.97438 * 5 3 2 25 25 H 0.96994 * 119.41555 * 0.04415 * 24 5 3 26 26 H 1.08995 * 109.47656 * 59.99667 * 1 2 3 27 27 H 1.09002 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47037 * 299.99583 * 1 2 3 29 29 H 1.08998 * 109.48013 * 303.67462 * 11 9 8 30 30 H 1.08999 * 109.48590 * 63.72535 * 11 9 8 31 31 H 1.08999 * 109.62683 * 185.65715 * 12 11 9 32 32 H 1.08997 * 109.78677 * 65.17805 * 12 11 9 33 33 H 0.96994 * 120.00088 * 179.97438 * 15 14 13 34 34 H 1.09000 * 109.62164 * 188.94006 * 20 13 12 35 35 H 1.08996 * 109.62121 * 68.37197 * 20 13 12 36 36 H 1.08995 * 109.48248 * 296.27769 * 21 9 8 37 37 H 1.08999 * 109.47998 * 56.32414 * 21 9 8 38 38 H 1.07995 * 120.87419 * 180.02562 * 22 7 6 39 39 H 1.07998 * 120.36333 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4022 2.2173 0.0005 5 6 3.5478 1.2774 -0.0006 6 7 4.2410 0.1693 -0.0016 7 6 5.5936 0.2040 -0.0027 8 7 6.2935 -0.9135 -0.0032 9 6 5.6070 -2.2078 -0.0032 10 1 4.5291 -2.0461 -0.0001 11 6 5.9988 -2.9910 -1.2572 12 6 5.2107 -4.3043 -1.3040 13 6 5.4395 -5.0489 -0.0072 14 6 5.8386 -6.3686 -0.0106 15 7 6.0322 -7.0000 1.1267 16 14 6.1044 -7.2599 -1.6307 17 1 7.5150 -7.0908 -2.0630 18 1 5.8103 -8.7048 -1.4549 19 1 5.1991 -6.6925 -2.6621 20 6 5.2190 -4.3085 1.2934 21 6 6.0067 -2.9951 1.2459 22 6 6.2681 1.5084 -0.0021 23 6 5.5048 2.6226 -0.0010 24 7 4.1449 2.5001 -0.0011 25 1 3.5947 3.2989 -0.0004 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 5.7696 -2.3979 -2.1425 30 1 7.0665 -3.2085 -1.2313 31 1 5.5586 -4.9104 -2.1404 32 1 4.1480 -4.0929 -1.4222 33 1 6.3126 -7.9285 1.1243 34 1 5.5722 -4.9174 2.1256 35 1 4.1574 -4.0946 1.4173 36 1 7.0742 -3.2124 1.2125 37 1 5.7832 -2.4049 2.1346 38 1 7.3460 1.5749 -0.0033 39 1 5.9649 3.5996 -0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167844699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:49 Heat of formation + Delta-G solvation = -42.463935 kcal Electronic energy + Delta-G solvation = -23083.636008 eV Core-core repulsion = 19605.098329 eV Total energy + Delta-G solvation = -3478.537678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.37182 -41.01899 -38.92725 -37.88448 -36.35107 -34.54441 -33.82801 -31.86742 -31.39524 -29.16618 -28.78246 -26.45671 -24.81412 -23.40457 -23.11440 -22.20786 -20.84839 -20.16449 -19.29028 -18.34377 -18.12118 -17.81594 -17.79418 -16.71747 -16.38189 -15.98675 -15.28390 -15.13526 -14.78549 -14.68260 -14.39565 -14.32533 -14.10506 -14.04213 -13.27604 -13.15376 -13.11286 -12.76743 -12.59665 -12.40651 -12.31243 -12.08364 -11.94571 -11.84424 -11.49494 -11.31697 -11.26315 -10.83392 -10.56405 -10.53255 -9.99422 -8.56339 -8.16337 -6.10883 -0.67020 0.48712 0.79353 1.17264 1.38964 1.39521 1.50508 2.14528 2.41515 2.70039 2.83339 3.07647 3.36172 3.71476 4.12931 4.17747 4.19004 4.24655 4.31875 4.35571 4.68711 4.70178 4.72901 4.78130 4.89571 4.94966 4.96893 5.05308 5.18031 5.21259 5.30499 5.40646 5.49912 5.55397 5.60532 5.75266 5.84731 6.01752 6.21614 6.36945 6.80392 6.92786 7.12234 7.46291 8.95270 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.004311 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.107733 B = 6493.689984 C = 7333.003500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C 0.535 3.465 4 O -0.491 6.491 5 C 0.386 3.614 6 N -0.535 5.535 7 C 0.317 3.683 8 N -0.559 5.559 9 C 0.098 3.902 10 H 0.046 0.954 11 C -0.081 4.081 12 C -0.012 4.012 13 C -0.499 4.499 14 C 0.020 3.980 15 N -0.933 5.933 16 Si 0.946 3.054 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.253 1.253 20 C 0.013 3.987 21 C -0.076 4.076 22 C -0.220 4.220 23 C 0.152 3.848 24 N -0.596 5.596 25 H 0.443 0.557 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.017 0.983 33 H 0.264 0.736 34 H 0.027 0.973 35 H -0.005 1.005 36 H 0.033 0.967 37 H 0.025 0.975 38 H 0.169 0.831 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.867 25.297 -3.899 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.253 6.253 3 C 0.374 3.626 4 O -0.377 6.377 5 C 0.107 3.893 6 N -0.266 5.266 7 C 0.042 3.958 8 N -0.280 5.280 9 C -0.012 4.012 10 H 0.065 0.935 11 C -0.119 4.119 12 C -0.050 4.050 13 C -0.518 4.518 14 C -0.178 4.178 15 N -0.573 5.573 16 Si 0.772 3.228 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.178 1.178 20 C -0.025 4.025 21 C -0.115 4.115 22 C -0.250 4.250 23 C 0.027 3.973 24 N -0.220 5.220 25 H 0.285 0.715 26 H 0.099 0.901 27 H 0.143 0.857 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.014 0.986 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.187 0.813 39 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -7.317 23.998 -3.823 25.378 hybrid contribution -0.547 -0.221 -0.280 0.653 sum -7.864 23.777 -4.102 25.378 Atomic orbital electron populations 1.23814 0.72626 1.06274 1.03892 1.86724 1.26239 1.30470 1.81877 1.20293 0.86417 0.82581 0.73268 1.90863 1.65628 1.35762 1.45437 1.20838 0.91292 0.83468 0.93708 1.69349 1.10536 1.26757 1.19941 1.21944 0.84654 0.95138 0.94102 1.73338 1.34727 0.98152 1.21788 1.21124 0.96450 0.88279 0.95383 0.93546 1.21392 0.99375 0.96101 0.95055 1.19733 0.95769 0.93895 0.95586 1.20584 1.43753 0.95668 0.91783 1.25665 0.94959 0.97655 0.99499 1.69981 1.48296 1.11488 1.27499 0.85722 0.79091 0.77243 0.80777 1.19891 1.21219 1.17757 1.19298 0.93615 0.92533 0.97060 1.21372 0.99044 0.96213 0.94844 1.22392 1.02521 0.88168 1.11906 1.22777 0.79593 1.01995 0.92904 1.41910 1.08135 1.07548 1.64454 0.71531 0.90102 0.85747 0.90239 0.94284 0.94050 0.94669 0.96467 0.92696 0.95468 0.98613 0.94819 0.95650 0.81317 0.73951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.34 -8.44 10.35 -55.40 -0.57 -9.01 16 3 C 0.53 11.89 8.00 70.61 0.56 12.46 16 4 O -0.49 -9.90 16.16 20.33 0.33 -9.57 16 5 C 0.39 8.90 7.67 137.12 1.05 9.95 16 6 N -0.54 -17.80 8.55 -182.17 -1.56 -19.35 16 7 C 0.32 10.89 7.60 136.49 1.04 11.93 16 8 N -0.56 -24.02 10.21 -320.75 -3.27 -27.30 16 9 C 0.10 4.75 2.70 44.96 0.12 4.87 16 10 H 0.05 2.35 6.70 -2.39 -0.02 2.33 16 11 C -0.08 -3.94 5.54 30.66 0.17 -3.77 16 12 C -0.01 -0.61 5.59 30.11 0.17 -0.44 16 13 C -0.50 -29.19 5.51 -16.17 -0.09 -29.28 16 14 C 0.02 1.18 5.46 84.66 0.46 1.64 16 15 N -0.93 -58.25 12.73 21.45 0.27 -57.98 16 16 Si 0.95 46.08 27.27 68.60 1.87 47.95 16 17 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.25 -11.65 6.46 99.48 0.64 -11.01 16 20 C 0.01 0.75 5.97 30.10 0.18 0.93 16 21 C -0.08 -4.00 5.54 30.66 0.17 -3.83 16 22 C -0.22 -4.59 10.30 23.79 0.25 -4.34 16 23 C 0.15 1.47 11.29 83.23 0.94 2.41 16 24 N -0.60 -7.39 5.30 -187.39 -0.99 -8.39 16 25 H 0.44 2.42 8.16 -92.71 -0.76 1.66 16 26 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.03 1.74 4.78 -2.39 -0.01 1.73 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.03 1.68 7.07 -2.39 -0.02 1.67 16 35 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.24 -0.80 8.06 -2.91 -0.02 -0.82 16 Total: -1.00 -83.00 327.39 2.56 -80.44 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: 0.26 Total: -0.91 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 6.22 Total: 4.13 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -5.55 Total: -113.02 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.25 Total: -18.59 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.87 Total: 47.95 kcal Total: -83.00 2.56 -80.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.977 kcal (2) G-P(sol) polarization free energy of solvation -82.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds