Wall clock time and date at job start Tue Mar 31 2020 07:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76209 * 102.99674 * 2 1 4 4 C 1.38857 * 120.04399 * 0.02562 * 3 2 1 5 5 C 1.38727 * 119.84709 * 179.97438 * 4 3 2 6 6 N 1.39669 * 120.03698 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00362 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.41207 * 35.00199 * 7 6 5 9 9 C 1.52958 * 109.41778 * 154.86025 * 7 6 5 10 10 C 1.53225 * 109.40670 * 183.70602 * 9 7 6 11 11 C 1.51276 * 108.53780 * 305.37213 * 10 9 7 12 12 C 1.37874 * 120.85109 * 231.32645 * 11 10 9 13 13 N 1.31517 * 119.99842 * 348.92965 * 12 11 10 14 14 Si 1.86791 * 120.00045 * 168.92918 * 12 11 10 15 15 H 1.48498 * 109.47308 * 354.66020 * 14 12 11 16 16 H 1.48499 * 109.47462 * 114.66063 * 14 12 11 17 17 H 1.48507 * 109.47442 * 234.65962 * 14 12 11 18 18 C 1.51266 * 118.29790 * 51.34669 * 11 10 9 19 19 C 1.52961 * 109.41351 * 275.14601 * 7 6 5 20 20 C 1.39015 * 119.93002 * 0.02562 * 5 4 3 21 21 C 1.38152 * 120.08383 * 359.74109 * 20 5 4 22 22 C 1.38151 * 120.15209 * 0.51325 * 21 20 5 23 23 C 1.50706 * 119.96227 * 179.76164 * 22 21 20 24 24 H 1.08997 * 109.47015 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47134 * 300.00149 * 1 2 3 26 26 H 1.08999 * 109.47445 * 59.99838 * 1 2 3 27 27 H 1.07998 * 120.07674 * 359.95722 * 4 3 2 28 28 H 0.97000 * 119.99457 * 0.02562 * 6 5 4 29 29 H 1.09005 * 109.48057 * 303.69022 * 9 7 6 30 30 H 1.09000 * 109.47695 * 63.72385 * 9 7 6 31 31 H 1.08998 * 109.62577 * 65.08787 * 10 9 7 32 32 H 1.09005 * 109.62701 * 185.66085 * 10 9 7 33 33 H 0.97003 * 119.99857 * 179.97438 * 13 12 11 34 34 H 1.09003 * 109.62626 * 68.36674 * 18 11 10 35 35 H 1.08997 * 109.62622 * 188.93905 * 18 11 10 36 36 H 1.09001 * 109.48289 * 296.26950 * 19 7 6 37 37 H 1.09002 * 109.48634 * 56.31424 * 19 7 6 38 38 H 1.08002 * 119.95855 * 179.97438 * 20 5 4 39 39 H 1.08003 * 119.92072 * 180.25077 * 21 20 5 40 40 H 1.08995 * 109.47280 * 269.72090 * 23 22 21 41 41 H 1.09001 * 109.46742 * 149.72102 * 23 22 21 42 42 H 1.09002 * 109.47172 * 29.72770 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7170 0.0000 4 6 1.1954 2.6647 0.0005 5 6 1.5121 4.0153 0.0011 6 7 0.4944 4.9720 0.0011 7 6 0.8296 6.3981 0.0011 8 1 1.7323 6.5581 -0.5886 9 6 -0.3253 7.1919 -0.6118 10 6 0.0626 8.6718 -0.6966 11 6 0.4790 9.1396 0.6804 12 6 -0.0708 10.2745 1.2378 13 7 -0.7986 11.0835 0.4992 14 14 0.2179 10.6630 3.0419 15 1 0.9537 9.5410 3.6783 16 1 1.0179 11.9087 3.1582 17 1 -1.0883 10.8481 3.7237 18 6 1.5142 8.3306 1.4300 19 6 1.0719 6.8634 1.4379 20 6 2.8433 4.4157 0.0005 21 6 3.8507 3.4703 0.0049 22 6 3.5393 2.1244 -0.0010 23 6 4.6417 1.0968 -0.0016 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.1620 2.3510 0.0003 28 1 -0.4343 4.6920 0.0011 29 1 -0.5362 6.8134 -1.6120 30 1 -1.2122 7.0838 0.0125 31 1 0.8938 8.7931 -1.3913 32 1 -0.7922 9.2554 -1.0386 33 1 -1.1857 11.8818 0.8914 34 1 2.4798 8.4203 0.9322 35 1 1.5921 8.6949 2.4544 36 1 0.1512 6.7633 2.0126 37 1 1.8521 6.2520 1.8914 38 1 3.0903 5.4670 0.0005 39 1 4.8841 3.7843 0.0085 40 1 4.9070 0.8491 -1.0294 41 1 4.3009 0.1980 0.5123 42 1 5.5146 1.4999 0.5119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167846049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:03 Heat of formation + Delta-G solvation = 4.492638 kcal Electronic energy + Delta-G solvation = -20857.350080 eV Core-core repulsion = 17927.141805 eV Total energy + Delta-G solvation = -2930.208274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.45646 -37.36185 -34.60117 -32.31610 -31.17500 -30.68753 -29.68227 -28.87533 -27.36298 -25.27224 -23.12033 -21.99921 -21.38447 -20.80060 -19.42022 -17.60919 -16.40212 -16.00947 -15.58223 -14.99070 -14.54337 -14.28008 -14.16485 -14.07926 -13.58200 -13.51529 -13.35409 -12.93518 -12.63164 -12.54303 -12.28802 -12.12153 -12.05813 -11.67731 -11.52261 -11.07584 -10.99731 -10.90859 -10.76595 -10.29183 -10.14280 -10.08724 -9.87535 -9.42289 -9.28381 -9.02284 -8.66509 -8.44993 -7.55793 -6.94732 -6.17037 -4.06084 1.43648 1.51299 1.75533 2.36477 3.22416 3.32833 3.33385 3.83507 3.95184 4.34037 4.89533 4.91287 4.94054 5.10192 5.12936 5.32077 5.43819 5.50588 5.59597 5.68527 5.70678 5.78663 5.82708 5.99941 6.05616 6.10360 6.35559 6.41864 6.51344 6.59858 6.66201 6.71781 6.79272 6.83107 6.95189 7.04357 7.12658 7.37073 7.54908 7.67004 7.70500 7.78920 8.09300 8.32117 8.90313 9.49225 10.92452 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027873 B = 0.003464 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.298677 B = 8081.624740 C = 8411.357956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.123 6.123 3 C -0.038 4.038 4 C -0.219 4.219 5 C 0.244 3.756 6 N -0.739 5.739 7 C 0.159 3.841 8 H 0.070 0.930 9 C -0.114 4.114 10 C 0.015 3.985 11 C -0.490 4.490 12 C 0.077 3.923 13 N -0.886 5.886 14 Si 0.878 3.122 15 H -0.256 1.256 16 H -0.283 1.283 17 H -0.286 1.286 18 C -0.024 4.024 19 C -0.118 4.118 20 C -0.196 4.196 21 C -0.055 4.055 22 C -0.140 4.140 23 C -0.103 4.103 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.393 0.607 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.006 0.994 32 H 0.056 0.944 33 H 0.264 0.736 34 H 0.017 0.983 35 H 0.042 0.958 36 H 0.051 0.949 37 H 0.035 0.965 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.524 -18.673 -0.897 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.119 5.881 3 C -0.151 4.151 4 C -0.247 4.247 5 C 0.135 3.865 6 N -0.364 5.364 7 C 0.056 3.944 8 H 0.088 0.912 9 C -0.153 4.153 10 C -0.023 4.023 11 C -0.509 4.509 12 C -0.126 4.126 13 N -0.523 5.523 14 Si 0.706 3.294 15 H -0.181 1.181 16 H -0.209 1.209 17 H -0.212 1.212 18 C -0.062 4.062 19 C -0.158 4.158 20 C -0.220 4.220 21 C -0.076 4.076 22 C -0.148 4.148 23 C -0.160 4.160 24 H 0.121 0.879 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.135 0.865 28 H 0.226 0.774 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.086 -19.339 -0.907 20.017 hybrid contribution -1.338 1.382 1.002 2.168 sum 3.748 -17.957 0.094 18.344 Atomic orbital electron populations 1.23670 0.95710 1.06518 1.05679 1.85224 1.05671 1.04421 1.92787 1.21153 0.95645 0.95100 1.03195 1.20433 0.97978 0.91369 1.14958 1.17722 0.89187 0.88164 0.91377 1.45302 1.06052 1.05018 1.79996 1.21020 0.98964 0.77240 0.97208 0.91231 1.21924 0.96599 0.99376 0.97404 1.19314 0.97733 0.89414 0.95821 1.20021 1.21958 1.08011 1.00904 1.24845 0.94834 0.95198 0.97704 1.69900 1.34297 1.12548 1.35569 0.86761 0.77952 0.78477 0.86216 1.18069 1.20873 1.21239 1.19940 0.96613 0.91704 0.97900 1.22024 0.99790 0.98732 0.95212 1.20831 0.90967 1.00229 1.10016 1.20694 0.98681 0.91441 0.96754 1.19157 0.92064 0.94555 1.09026 1.20613 0.96318 0.97232 1.01816 0.87866 0.89898 0.89891 0.86497 0.77386 0.94629 0.92922 0.97542 0.92512 0.92627 0.96429 0.94018 0.93057 0.94653 0.85406 0.85989 0.91791 0.91788 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.15 101.05 0.92 -0.34 16 2 S -0.12 -1.39 20.76 -107.50 -2.23 -3.62 16 3 C -0.04 -0.52 6.11 -39.07 -0.24 -0.75 16 4 C -0.22 -3.08 9.21 -39.17 -0.36 -3.44 16 5 C 0.24 3.77 6.63 -83.82 -0.56 3.22 16 6 N -0.74 -11.65 5.24 -52.23 -0.27 -11.93 16 7 C 0.16 2.92 2.05 -67.97 -0.14 2.78 16 8 H 0.07 1.32 6.48 -51.93 -0.34 0.98 16 9 C -0.11 -2.28 5.40 -26.64 -0.14 -2.43 16 10 C 0.02 0.36 5.93 -27.48 -0.16 0.20 16 11 C -0.49 -12.48 5.48 -98.92 -0.54 -13.03 16 12 C 0.08 2.06 5.44 -17.82 -0.10 1.96 16 13 N -0.89 -25.01 12.82 55.43 0.71 -24.30 16 14 Si 0.88 20.43 27.95 -169.99 -4.75 15.68 16 15 H -0.26 -5.71 5.58 56.52 0.32 -5.39 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 C -0.02 -0.53 5.66 -27.48 -0.16 -0.69 16 19 C -0.12 -2.35 5.43 -26.63 -0.14 -2.50 16 20 C -0.20 -3.00 8.82 -39.33 -0.35 -3.35 16 21 C -0.06 -0.75 9.68 -39.64 -0.38 -1.14 16 22 C -0.14 -1.88 5.90 -104.36 -0.62 -2.49 16 23 C -0.10 -1.10 9.57 36.01 0.34 -0.76 16 24 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.71 7.75 -51.92 -0.40 0.30 16 26 H 0.08 0.70 7.75 -51.92 -0.40 0.30 16 27 H 0.12 1.45 5.88 -52.49 -0.31 1.14 16 28 H 0.39 5.60 8.61 -40.82 -0.35 5.25 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.06 1.49 7.19 -51.93 -0.37 1.12 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.04 0.95 4.36 -51.93 -0.23 0.72 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.03 0.66 7.76 -51.93 -0.40 0.26 16 38 H 0.13 2.02 6.17 -52.49 -0.32 1.69 16 39 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.68 6.77 -51.93 -0.35 0.33 16 42 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -27.52 337.18 -10.58 -38.10 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.50 Total: 3.74 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -2.62 Total: -22.75 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.44 Total: -36.23 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.75 Total: 15.68 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.23 Total: -3.62 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.52 -10.58 -38.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.593 kcal (2) G-P(sol) polarization free energy of solvation -27.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds