Wall clock time and date at job start Tue Mar 31 2020 07:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76209 * 102.99674 * 2 1 4 4 C 1.38857 * 120.04399 * 0.02562 * 3 2 1 5 5 C 1.38727 * 119.84709 * 179.97438 * 4 3 2 6 6 N 1.39669 * 120.03698 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00362 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.41207 * 35.00199 * 7 6 5 9 9 C 1.52958 * 109.41778 * 154.86025 * 7 6 5 10 10 C 1.53225 * 109.40670 * 183.70602 * 9 7 6 11 11 C 1.51276 * 108.53780 * 305.37213 * 10 9 7 12 12 C 1.37874 * 120.85109 * 231.32645 * 11 10 9 13 13 N 1.31517 * 119.99842 * 348.92965 * 12 11 10 14 14 Si 1.86791 * 120.00045 * 168.92918 * 12 11 10 15 15 H 1.48498 * 109.47308 * 354.66020 * 14 12 11 16 16 H 1.48499 * 109.47462 * 114.66063 * 14 12 11 17 17 H 1.48507 * 109.47442 * 234.65962 * 14 12 11 18 18 C 1.51266 * 118.29790 * 51.34669 * 11 10 9 19 19 C 1.52961 * 109.41351 * 275.14601 * 7 6 5 20 20 C 1.39015 * 119.93002 * 0.02562 * 5 4 3 21 21 C 1.38152 * 120.08383 * 359.74109 * 20 5 4 22 22 C 1.38151 * 120.15209 * 0.51325 * 21 20 5 23 23 C 1.50706 * 119.96227 * 179.76164 * 22 21 20 24 24 H 1.08997 * 109.47015 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47134 * 300.00149 * 1 2 3 26 26 H 1.08999 * 109.47445 * 59.99838 * 1 2 3 27 27 H 1.07998 * 120.07674 * 359.95722 * 4 3 2 28 28 H 0.97000 * 119.99457 * 0.02562 * 6 5 4 29 29 H 1.09005 * 109.48057 * 303.69022 * 9 7 6 30 30 H 1.09000 * 109.47695 * 63.72385 * 9 7 6 31 31 H 1.08998 * 109.62577 * 65.08787 * 10 9 7 32 32 H 1.09005 * 109.62701 * 185.66085 * 10 9 7 33 33 H 0.97003 * 119.99857 * 179.97438 * 13 12 11 34 34 H 1.09003 * 109.62626 * 68.36674 * 18 11 10 35 35 H 1.08997 * 109.62622 * 188.93905 * 18 11 10 36 36 H 1.09001 * 109.48289 * 296.26950 * 19 7 6 37 37 H 1.09002 * 109.48634 * 56.31424 * 19 7 6 38 38 H 1.08002 * 119.95855 * 179.97438 * 20 5 4 39 39 H 1.08003 * 119.92072 * 180.25077 * 21 20 5 40 40 H 1.08995 * 109.47280 * 269.72090 * 23 22 21 41 41 H 1.09001 * 109.46742 * 149.72102 * 23 22 21 42 42 H 1.09002 * 109.47172 * 29.72770 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7170 0.0000 4 6 1.1954 2.6647 0.0005 5 6 1.5121 4.0153 0.0011 6 7 0.4944 4.9720 0.0011 7 6 0.8296 6.3981 0.0011 8 1 1.7323 6.5581 -0.5886 9 6 -0.3253 7.1919 -0.6118 10 6 0.0626 8.6718 -0.6966 11 6 0.4790 9.1396 0.6804 12 6 -0.0708 10.2745 1.2378 13 7 -0.7986 11.0835 0.4992 14 14 0.2179 10.6630 3.0419 15 1 0.9537 9.5410 3.6783 16 1 1.0179 11.9087 3.1582 17 1 -1.0883 10.8481 3.7237 18 6 1.5142 8.3306 1.4300 19 6 1.0719 6.8634 1.4379 20 6 2.8433 4.4157 0.0005 21 6 3.8507 3.4703 0.0049 22 6 3.5393 2.1244 -0.0010 23 6 4.6417 1.0968 -0.0016 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.1620 2.3510 0.0003 28 1 -0.4343 4.6920 0.0011 29 1 -0.5362 6.8134 -1.6120 30 1 -1.2122 7.0838 0.0125 31 1 0.8938 8.7931 -1.3913 32 1 -0.7922 9.2554 -1.0386 33 1 -1.1857 11.8818 0.8914 34 1 2.4798 8.4203 0.9322 35 1 1.5921 8.6949 2.4544 36 1 0.1512 6.7633 2.0126 37 1 1.8521 6.2520 1.8914 38 1 3.0903 5.4670 0.0005 39 1 4.8841 3.7843 0.0085 40 1 4.9070 0.8491 -1.0294 41 1 4.3009 0.1980 0.5123 42 1 5.5146 1.4999 0.5119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167846049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:02 Heat of formation + Delta-G solvation = -8.420307 kcal Electronic energy + Delta-G solvation = -20857.910027 eV Core-core repulsion = 17927.141805 eV Total energy + Delta-G solvation = -2930.768222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.61120 -38.83950 -36.05295 -33.95816 -32.30638 -31.97324 -31.34796 -29.68740 -28.86362 -26.44164 -24.36706 -23.63739 -23.01992 -21.96069 -21.03594 -18.76759 -18.05828 -17.15548 -16.83686 -16.42744 -15.99496 -15.54774 -15.24254 -15.07168 -14.89610 -14.58520 -14.49188 -14.30588 -14.20852 -14.04031 -13.69648 -13.31041 -13.17595 -12.88646 -12.77133 -12.66528 -12.58592 -12.47843 -12.04734 -11.89090 -11.72053 -11.32800 -11.15797 -11.07163 -10.78733 -10.59443 -10.46251 -10.23047 -8.54498 -8.19217 -8.04949 -6.11066 0.36932 0.65916 0.69058 1.36896 1.42464 1.49956 1.51883 2.40686 2.57089 2.87045 3.10222 3.93648 4.02481 4.17698 4.22810 4.25772 4.26717 4.34470 4.45399 4.52390 4.64880 4.71371 4.77260 4.88686 4.89654 4.91478 4.96512 5.00967 5.07465 5.10534 5.21760 5.30015 5.31960 5.36751 5.49565 5.58171 5.60347 5.71732 5.76669 5.81680 5.92729 6.33846 6.47499 6.91930 6.94853 7.46537 8.91893 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027873 B = 0.003464 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.298677 B = 8081.624740 C = 8411.357956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.125 6.125 3 C -0.051 4.051 4 C -0.220 4.220 5 C 0.226 3.774 6 N -0.737 5.737 7 C 0.175 3.825 8 H 0.065 0.935 9 C -0.103 4.103 10 C 0.012 3.988 11 C -0.498 4.498 12 C 0.023 3.977 13 N -0.929 5.929 14 Si 0.931 3.069 15 H -0.238 1.238 16 H -0.284 1.284 17 H -0.289 1.289 18 C -0.025 4.025 19 C -0.110 4.110 20 C -0.214 4.214 21 C -0.059 4.059 22 C -0.146 4.146 23 C -0.101 4.101 24 H 0.125 0.875 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.132 0.868 28 H 0.400 0.600 29 H 0.052 0.948 30 H 0.048 0.952 31 H -0.001 1.001 32 H 0.025 0.975 33 H 0.262 0.738 34 H 0.021 0.979 35 H 0.041 0.959 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.118 0.882 39 H 0.142 0.858 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.331 -21.371 -0.165 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.117 5.883 3 C -0.165 4.165 4 C -0.248 4.248 5 C 0.119 3.881 6 N -0.364 5.364 7 C 0.070 3.930 8 H 0.083 0.917 9 C -0.141 4.141 10 C -0.026 4.026 11 C -0.517 4.517 12 C -0.176 4.176 13 N -0.569 5.569 14 Si 0.757 3.243 15 H -0.162 1.162 16 H -0.210 1.210 17 H -0.216 1.216 18 C -0.063 4.063 19 C -0.149 4.149 20 C -0.239 4.239 21 C -0.079 4.079 22 C -0.154 4.154 23 C -0.158 4.158 24 H 0.144 0.856 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.149 0.851 28 H 0.235 0.765 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.018 0.982 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.136 0.864 39 H 0.160 0.840 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.913 -22.088 -0.171 22.866 hybrid contribution -1.550 2.093 0.692 2.694 sum 4.363 -19.995 0.521 20.472 Atomic orbital electron populations 1.23780 0.93381 1.08131 1.05973 1.85224 1.08251 1.02450 1.92410 1.21474 0.95852 0.96532 1.02604 1.20604 0.98979 0.90857 1.14386 1.17856 0.89060 0.88599 0.92537 1.44954 1.06651 1.03775 1.81007 1.20605 0.97798 0.78656 0.95908 0.91736 1.21697 0.97038 0.96786 0.98584 1.19269 0.96189 0.91919 0.95270 1.20621 1.21784 1.07814 1.01504 1.25603 0.95224 0.95451 1.01305 1.70029 1.36337 1.13355 1.37185 0.85912 0.77717 0.78615 0.82026 1.16186 1.21001 1.21560 1.19939 0.95867 0.93134 0.97339 1.21889 0.99740 0.96969 0.96301 1.20904 0.91551 1.00182 1.11218 1.20950 0.99397 0.91434 0.96101 1.19559 0.92891 0.95073 1.07834 1.20647 0.95957 0.96587 1.02570 0.85621 0.89634 0.89535 0.85068 0.76487 0.92944 0.93352 0.98222 0.95665 0.92871 0.96047 0.94103 0.93728 0.93279 0.86367 0.83993 0.90966 0.91665 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.15 113.37 1.04 -1.02 16 2 S -0.13 -2.52 20.76 -56.49 -1.17 -3.69 16 3 C -0.05 -1.29 6.11 22.60 0.14 -1.15 16 4 C -0.22 -5.73 9.21 22.54 0.21 -5.53 16 5 C 0.23 6.63 6.63 38.20 0.25 6.88 16 6 N -0.74 -22.10 5.24 -319.16 -1.67 -23.77 16 7 C 0.18 6.23 2.05 44.97 0.09 6.32 16 8 H 0.06 2.39 6.48 -2.39 -0.02 2.37 16 9 C -0.10 -4.05 5.40 30.66 0.17 -3.88 16 10 C 0.01 0.57 5.93 30.11 0.18 0.74 16 11 C -0.50 -25.57 5.48 -16.17 -0.09 -25.66 16 12 C 0.02 1.22 5.44 84.65 0.46 1.68 16 13 N -0.93 -54.12 12.82 21.45 0.28 -53.85 16 14 Si 0.93 42.16 27.95 68.60 1.92 44.07 16 15 H -0.24 -9.97 5.58 99.48 0.56 -9.41 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 18 C -0.02 -1.10 5.66 30.11 0.17 -0.93 16 19 C -0.11 -4.21 5.43 30.66 0.17 -4.04 16 20 C -0.21 -6.27 8.82 22.44 0.20 -6.07 16 21 C -0.06 -1.48 9.68 22.23 0.22 -1.27 16 22 C -0.15 -3.58 5.90 -19.70 -0.12 -3.70 16 23 C -0.10 -1.90 9.57 71.24 0.68 -1.22 16 24 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.21 7.75 -2.39 -0.02 1.19 16 26 H 0.09 1.20 7.75 -2.39 -0.02 1.19 16 27 H 0.13 2.93 5.88 -2.91 -0.02 2.91 16 28 H 0.40 10.70 8.61 -92.71 -0.80 9.91 16 29 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.02 1.36 7.19 -2.38 -0.02 1.35 16 33 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 34 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.04 1.79 4.36 -2.39 -0.01 1.78 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.75 7.76 -2.39 -0.02 1.73 16 38 H 0.12 3.63 6.17 -2.91 -0.02 3.61 16 39 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.23 6.77 -2.39 -0.02 1.21 16 42 H 0.08 1.23 8.08 -2.39 -0.02 1.22 16 Total: -1.00 -59.29 337.18 3.18 -56.11 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.07 Total: 19.97 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 3.76 Total: -38.84 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -1.40 Total: -77.62 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.92 Total: 44.07 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -1.17 Total: -3.69 kcal Total: -59.29 3.18 -56.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.692 kcal (2) G-P(sol) polarization free energy of solvation -59.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds