Wall clock time and date at job start Tue Mar 31 2020 06:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47963 * 110.99991 * 2 1 4 4 C 1.53941 * 86.17755 * 222.41621 * 3 2 1 5 5 C 1.53001 * 113.73302 * 138.07882 * 4 3 2 6 6 N 1.46493 * 109.47366 * 176.89946 * 5 4 3 7 7 C 1.39672 * 120.00299 * 179.97438 * 6 5 4 8 8 C 1.38170 * 119.98933 * 6.08267 * 7 6 5 9 9 C 1.41130 * 119.50286 * 179.97438 * 8 7 6 10 10 C 1.40363 * 120.24813 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00170 * 23.96926 * 10 9 8 12 12 C 1.46524 * 119.99490 * 203.96859 * 10 9 8 13 13 N 1.29514 * 120.00389 * 15.32158 * 12 10 9 14 14 Si 1.86800 * 119.99764 * 195.31360 * 12 10 9 15 15 H 1.48504 * 109.47056 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47310 * 119.99899 * 14 12 10 17 17 H 1.48502 * 109.47292 * 240.00308 * 14 12 10 18 18 C 1.41339 * 119.49803 * 359.73602 * 9 8 7 19 19 C 1.36484 * 119.95933 * 0.50959 * 18 9 8 20 20 C 1.38663 * 120.50442 * 359.48824 * 19 18 9 21 21 N 1.48014 * 119.74463 * 180.25414 * 20 19 18 22 22 O 1.31699 * 120.00000 * 353.67853 * 21 20 19 23 23 O 1.31701 * 120.00233 * 173.68316 * 21 20 19 24 24 C 1.48194 * 111.07236 * 260.56437 * 2 1 3 25 25 H 1.09000 * 109.46742 * 60.00228 * 1 2 3 26 26 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47120 * 300.00142 * 1 2 3 28 28 H 1.08999 * 113.76412 * 108.09930 * 3 2 1 29 29 H 1.08997 * 113.85625 * 336.74338 * 3 2 1 30 30 H 1.09003 * 113.73209 * 269.25025 * 4 3 2 31 31 H 1.09007 * 109.47383 * 56.89614 * 5 4 3 32 32 H 1.09000 * 109.47276 * 296.89764 * 5 4 3 33 33 H 0.97008 * 119.99732 * 359.97438 * 6 5 4 34 34 H 1.07998 * 120.24759 * 359.97399 * 8 7 6 35 35 H 0.97004 * 119.99541 * 180.02562 * 13 12 10 36 36 H 1.08003 * 120.02198 * 180.29131 * 18 9 8 37 37 H 1.08001 * 119.75133 * 179.75419 * 19 18 9 38 38 H 1.08992 * 113.75677 * 23.23574 * 24 2 1 39 39 H 1.09002 * 113.82234 * 251.80734 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8792 -1.0360 5 6 3.2611 1.8569 -2.1882 6 7 4.2978 1.3222 -3.0745 7 6 4.6903 2.0430 -4.2046 8 6 4.1940 3.3144 -4.4196 9 6 4.5979 4.0337 -5.5647 10 6 4.1030 5.3262 -5.7988 11 1 3.7450 5.9250 -4.9743 12 6 4.0722 5.8631 -7.1618 13 7 4.2135 5.0680 -8.1744 14 14 3.8288 7.6943 -7.4390 15 1 3.6936 8.3796 -6.1286 16 1 5.0005 8.2449 -8.1664 17 1 2.5993 7.9142 -8.2423 18 6 5.5083 3.4448 -6.4713 19 6 5.9814 2.1855 -6.2407 20 6 5.5840 1.4794 -5.1154 21 7 6.1119 0.1170 -4.8790 22 8 6.8557 -0.4691 -5.7943 23 8 5.8378 -0.5094 -3.7533 24 6 2.0018 -0.2267 -1.3641 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 2.4460 1.6804 0.9482 29 1 1.3022 2.1211 -0.3936 30 1 3.9459 0.5068 -0.5953 31 1 3.5853 2.8176 -1.7880 32 1 2.3366 1.9906 -2.7498 33 1 4.7117 0.4675 -2.8764 34 1 3.5022 3.7544 -3.7167 35 1 4.1935 5.4236 -9.0767 36 1 5.8267 3.9895 -7.3479 37 1 6.6738 1.7371 -6.9378 38 1 1.3043 0.0403 -2.1579 39 1 2.4506 -1.2102 -1.5037 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170256622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:18 Heat of formation + Delta-G solvation = 66.882076 kcal Electronic energy + Delta-G solvation = -22812.671046 eV Core-core repulsion = 19338.874966 eV Total energy + Delta-G solvation = -3473.796080 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.06087 -38.80123 -36.78330 -35.48053 -34.03600 -32.84636 -31.23825 -30.71240 -28.50544 -26.90171 -26.26044 -25.91333 -23.69058 -22.58303 -21.11239 -20.58922 -19.64004 -18.21451 -17.11524 -16.73447 -16.10548 -15.95574 -15.64459 -15.30389 -14.82382 -14.63445 -14.40938 -13.85881 -13.62650 -13.26744 -12.97393 -12.86413 -12.71805 -12.55348 -11.97054 -11.72285 -11.64434 -11.47606 -11.20454 -11.18277 -10.82021 -10.67551 -10.61796 -10.13321 -9.97480 -9.80260 -9.53109 -9.48226 -9.26410 -8.93384 -8.31247 -7.69644 -6.85096 -5.18822 0.83163 2.34508 2.60991 2.69231 2.77783 2.84628 2.86242 3.29750 3.83335 3.85173 3.92234 4.50871 4.76909 4.96467 5.02193 5.18690 5.31565 5.34753 5.37547 5.55985 5.64765 5.69621 5.70419 5.83316 5.94606 6.03028 6.17359 6.24655 6.27688 6.35365 6.50170 6.56969 6.85221 6.90497 7.11220 7.25086 7.31649 7.51230 7.68112 7.91785 8.04962 8.29521 8.34379 8.64259 9.14803 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013027 B = 0.004606 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.840386 B = 6077.371107 C = 7922.411260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.487 5.487 3 C 0.010 3.990 4 C -0.124 4.124 5 C 0.132 3.868 6 N -0.734 5.734 7 C 0.301 3.699 8 C -0.316 4.316 9 C 0.137 3.863 10 C -0.374 4.374 11 H 0.102 0.898 12 C 0.062 3.938 13 N -0.712 5.712 14 Si 0.930 3.070 15 H -0.249 1.249 16 H -0.261 1.261 17 H -0.264 1.264 18 C -0.167 4.167 19 C -0.041 4.041 20 C -0.147 4.147 21 N 0.059 4.941 22 O -0.313 6.313 23 O -0.344 6.344 24 C 0.007 3.993 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.414 0.586 34 H 0.114 0.886 35 H 0.304 0.696 36 H 0.134 0.866 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.202 4.607 6.259 10.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.209 5.209 3 C -0.119 4.119 4 C -0.143 4.143 5 C 0.006 3.994 6 N -0.382 5.382 7 C 0.193 3.807 8 C -0.343 4.343 9 C 0.132 3.868 10 C -0.399 4.399 11 H 0.120 0.880 12 C -0.171 4.171 13 N -0.331 5.331 14 Si 0.751 3.249 15 H -0.172 1.172 16 H -0.186 1.186 17 H -0.188 1.188 18 C -0.189 4.189 19 C -0.062 4.062 20 C -0.255 4.255 21 N 0.474 4.526 22 O -0.469 6.469 23 O -0.484 6.484 24 C -0.122 4.122 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.266 0.734 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.151 0.849 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.219 4.174 6.700 10.697 hybrid contribution -0.280 0.473 -0.831 0.996 sum -7.499 4.647 5.869 10.596 Atomic orbital electron populations 1.22855 0.89854 1.02334 1.00971 1.68507 1.08921 1.18451 1.25052 1.23931 0.96703 0.91534 0.99773 1.23181 0.99039 0.96275 0.95828 1.21277 0.91695 0.96379 0.90037 1.46082 1.42155 1.25739 1.24202 1.17261 0.88657 0.90650 0.84180 1.20299 1.14238 0.93929 1.05871 1.17650 0.87592 0.91683 0.89882 1.21498 1.28012 0.97943 0.92492 0.87990 1.27875 0.91529 1.02301 0.95375 1.69112 1.22884 1.39476 1.01584 0.85855 0.79657 0.78645 0.80694 1.17169 1.18551 1.18843 1.21185 1.00791 0.94786 1.02110 1.20010 0.98316 0.94222 0.93615 1.19609 1.16560 0.83835 1.05450 1.49906 0.99156 1.03282 1.00268 1.96111 1.41546 1.71032 1.38187 1.95661 1.71121 1.68246 1.13414 1.24129 0.96802 1.00726 0.90537 0.94650 0.91257 0.91480 0.89142 0.90924 0.87626 0.92041 0.92552 0.73433 0.86811 0.88290 0.84859 0.86206 0.90913 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.06 0.58 0.47 16 2 N -0.49 -5.86 6.55 -246.38 -1.61 -7.48 16 3 C 0.01 0.11 7.55 -2.76 -0.02 0.09 16 4 C -0.12 -1.61 3.93 -89.68 -0.35 -1.97 16 5 C 0.13 1.99 4.79 -4.04 -0.02 1.97 16 6 N -0.73 -14.36 5.62 -58.67 -0.33 -14.69 16 7 C 0.30 6.70 6.63 -83.84 -0.56 6.15 16 8 C -0.32 -6.73 9.08 -38.51 -0.35 -7.08 16 9 C 0.14 3.02 5.62 -106.82 -0.60 2.42 16 10 C -0.37 -7.60 9.32 -35.45 -0.33 -7.93 16 11 H 0.10 1.91 7.98 -52.49 -0.42 1.49 16 12 C 0.06 1.15 5.36 -15.19 -0.08 1.07 16 13 N -0.71 -13.91 10.93 55.98 0.61 -13.30 16 14 Si 0.93 13.60 29.67 -169.99 -5.04 8.55 16 15 H -0.25 -3.62 7.11 56.52 0.40 -3.22 16 16 H -0.26 -3.80 7.11 56.52 0.40 -3.40 16 17 H -0.26 -3.83 7.11 56.52 0.40 -3.43 16 18 C -0.17 -3.74 8.72 -39.04 -0.34 -4.08 16 19 C -0.04 -0.96 9.50 -40.06 -0.38 -1.34 16 20 C -0.15 -3.58 6.92 -79.32 -0.55 -4.13 16 21 N 0.06 1.53 4.98 34.27 0.17 1.70 16 22 O -0.31 -8.52 19.14 -31.57 -0.60 -9.12 16 23 O -0.34 -8.83 16.29 -31.57 -0.51 -9.35 16 24 C 0.01 0.08 7.54 -2.63 -0.02 0.06 16 25 H 0.03 0.34 7.63 -51.93 -0.40 -0.06 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 30 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.06 0.89 7.71 -51.93 -0.40 0.49 16 32 H 0.06 0.84 7.87 -51.93 -0.41 0.43 16 33 H 0.41 8.60 4.67 -42.09 -0.20 8.40 16 34 H 0.11 2.19 6.72 -52.49 -0.35 1.83 16 35 H 0.30 5.13 8.27 -40.82 -0.34 4.79 16 36 H 0.13 2.91 6.07 -52.48 -0.32 2.59 16 37 H 0.12 2.68 7.57 -52.49 -0.40 2.28 16 38 H 0.07 0.92 7.40 -51.93 -0.38 0.54 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -26.94 329.60 -10.31 -37.24 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -4.93 Total: 15.76 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -3.02 Total: -14.29 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: -1.16 Total: -33.76 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.12 Total: -18.47 kcal Atomic # 14 Polarization: 13.60 SS G_CDS: -5.04 Total: 8.55 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.94 -10.31 -37.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170256622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.123 kcal (2) G-P(sol) polarization free energy of solvation -26.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds